Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  138  of  218  ( 26060 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42186209--42186261
24
2.2
25
83
10
74
32
1
13
52
1.51
42187361--42187400
20
2.1
20
86
9
57
65
5
2
27
1.27
42187518--42187551
10
3.3
10
84
8
50
67
2
0
29
1.05
42187678--42187721
19
2.3
19
80
7
54
34
2
0
63
1.07
42195035--42195106
6
12.5
6
79
7
69
76
1
1
20
0.94
42216866--42216939
29
2.6
29
89
4
105
24
32
16
27
1.96
42216921--42217066
43
3.4
43
97
0
274
26
34
15
22
1.94
42229080--42229149
36
2.0
35
91
2
113
40
11
5
42
1.65
42232032--42232075
22
2.0
22
100
0
88
45
4
0
50
1.22
42235740--42235771
16
1.9
17
93
6
57
37
0
12
50
1.41
42237434--42237482
25
1.9
26
83
4
64
30
26
22
20
1.98
42243871--42244323
205
2.2
206
79
3
457
38
20
22
18
1.94
42243802--42244356
69
8.1
69
76
3
395
39
20
22
18
1.93
42253445--42253479
18
1.9
18
88
0
52
17
11
14
57
1.66
42256214--42256253
21
2.0
21
85
5
55
60
15
7
17
1.57
42261448--42261743
51
5.9
50
76
5
283
29
27
17
25
1.97
42261456--42261741
101
2.8
100
82
4
322
30
26
17
25
1.97
42261705--42261737
14
2.5
13
90
9
50
39
27
9
24
1.85
42261900--42261928
15
2.0
15
93
6
51
48
6
0
44
1.29
42266578--42267001
47
8.9
47
95
1
713
31
8
30
29
1.86
42267120--42267198
37
2.1
37
90
0
122
24
18
31
25
1.98
42268056--42268137
42
2.0
42
82
4
103
32
24
14
28
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42270823--42271159
51
6.7
50
73
8
270
30
24
17
26
1.97
42270813--42271160
101
3.4
99
77
6
306
30
25
17
26
1.97
42270813--42271152
152
2.2
152
86
2
486
30
25
17
26
1.97
42271327--42271383
30
1.9
30
89
7
89
29
19
5
45
1.72
42279590--42279633
23
1.9
23
90
0
70
75
2
18
4
1.09
42286715--42287029
42
7.5
42
81
3
314
28
21
19
29
1.98
42286769--42287029
84
3.1
84
89
0
407
30
19
19
30
1.97
42287987--42288011
4
6.2
4
100
0
50
52
24
0
24
1.48
42290356--42290416
27
2.3
27
82
5
70
36
21
24
18
1.95
42295323--42295369
13
3.6
13
75
11
51
61
4
2
31
1.27
42295625--42295668
20
2.2
20
84
8
54
54
6
6
31
1.53
42299936--42299977
21
2.0
21
86
9
59
21
7
21
50
1.72
42302881--42302924
22
2.0
22
86
0
61
27
25
20
27
1.99
42304313--42304365
20
2.7
20
79
5
63
41
22
3
32
1.72
42304554--42304628
23
3.2
24
83
3
84
36
18
26
18
1.94
42311650--42311696
14
3.3
14
77
16
60
46
14
4
34
1.64
42311774--42311824
20
2.6
19
81
9
66
43
19
3
33
1.70
42311998--42312078
23
3.5
23
76
5
83
37
19
23
19
1.95
42311998--42312088
23
4.0
22
76
8
74
37
19
23
19
1.94
42312385--42312722
125
2.7
125
92
0
559
29
22
20
27
1.99
42312591--42313213
166
3.8
164
79
8
673
34
19
19
25
1.96
42313834--42313876
13
3.2
13
77
6
50
16
2
27
53
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42313898--42313957
22
2.8
21
77
7
66
20
6
40
33
1.78
42318081--42318130
21
2.4
21
96
0
91
32
18
48
2
1.59
42318468--42318719
43
5.7
43
84
9
285
30
16
27
25
1.97
42318586--42318720
49
2.9
49
86
10
194
25
15
31
27
1.96
42318543--42318727
92
2.0
92
91
2
300
28
15
29
27
1.96
42318638--42318736
43
2.3
42
87
1
135
26
17
29
27
1.97
42320261--42320323
30
2.1
30
82
5
74
28
19
23
28
1.98
42320216--42320366
66
2.3
66
87
0
221
27
17
25
29
1.98
42320229--42320362
36
3.9
35
72
16
127
26
17
25
29
1.98
42326024--42326065
22
1.9
22
85
0
57
69
0
2
28
1.01
42326838--42326881
20
2.3
19
88
4
61
56
0
0
43
0.99
42330823--42330888
22
3.0
22
86
0
78
19
19
33
27
1.96
42336620--42336731
42
2.7
42
81
2
118
30
15
22
32
1.94
42345062--42345128
30
2.2
30
97
0
125
19
22
35
22
1.96
42349089--42349165
6
13.5
6
73
13
65
76
3
2
16
1.05
42349064--42349120
14
3.9
15
75
13
57
75
7
0
17
1.02
42349057--42349125
27
2.5
27
81
11
79
73
5
0
20
1.03
42349064--42349166
40
2.5
41
76
10
104
73
4
1
19
1.11
42349089--42349165
24
3.4
22
79
13
86
76
3
2
16
1.05
42349089--42349166
16
4.6
16
77
15
77
75
3
2
17
1.07
42349063--42349165
12
8.7
11
68
21
66
74
4
1
18
1.09
42349113--42349171
17
3.5
17
88
6
68
72
1
5
20
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42349620--42349662
22
2.0
22
86
4
61
13
9
6
69
1.35
42352814--42352925
33
3.4
33
83
2
136
48
15
19
16
1.82
42352814--42352944
33
4.0
32
76
11
122
47
16
19
17
1.83
42352838--42352986
66
2.3
66
80
6
151
47
15
19
17
1.82
42361063--42361124
30
2.1
29
82
8
72
25
25
14
33
1.94
42361060--42361457
29
13.5
29
78
6
268
24
26
12
37
1.90
42361153--42361407
87
2.9
86
82
10
311
23
26
12
37
1.90
42380300--42380433
72
1.9
70
86
6
191
42
2
4
50
1.38
42384403--42384589
93
2.0
92
98
1
365
29
7
21
41
1.81
42389759--42390017
43
5.9
43
82
7
313
25
27
16
29
1.97
42389759--42390050
86
3.3
86
85
5
377
27
26
16
29
1.97
42389858--42390043
92
2.0
92
90
0
291
27
25
17
29
1.97
42390392--42390628
9
27.7
9
66
19
80
30
2
16
50
1.57
42390420--42390716
16
18.1
16
66
20
93
30
2
17
50
1.57
42390435--42390541
25
4.2
25
79
11
126
30
1
16
50
1.56
42390513--42390600
34
2.6
36
76
10
103
30
2
14
52
1.54
42390699--42390742
23
1.9
23
90
9
72
29
0
22
47
1.51
42390753--42390806
17
3.1
18
74
17
60
59
3
0
37
1.15
42391029--42391127
19
4.9
19
81
14
110
50
2
0
47
1.12
42390962--42391134
64
2.8
66
75
11
159
51
1
1
45
1.19
42391029--42391128
23
4.9
20
81
11
91
50
2
0
48
1.12
42391138--42391240
55
1.9
51
83
15
127
44
8
6
39
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42392257--42392297
19
2.2
19
95
0
73
41
9
4
43
1.59
42393106--42393138
14
2.4
14
100
0
66
21
36
6
36
1.78
42393371--42393428
28
2.1
28
96
0
107
34
25
6
32
1.83
42393608--42393649
18
2.2
20
87
8
61
2
30
9
57
1.44
42401874--42401910
17
2.1
18
90
5
58
29
0
2
67
1.04
42409995--42410044
24
2.2
23
89
7
75
36
6
32
26
1.81
42415049--42415103
19
2.9
18
83
8
56
58
0
1
40
1.09
42424833--42425156
55
5.9
55
84
1
400
28
16
26
29
1.97
42424837--42425173
110
3.1
110
85
4
450
27
16
27
28
1.97
42424833--42425156
165
2.0
164
85
0
441
28
16
26
29
1.97
42435291--42435340
25
2.1
23
85
14
66
48
0
2
50
1.12
42438479--42438557
33
2.4
32
80
12
90
25
7
17
49
1.73
42438568--42438610
20
2.2
20
86
0
59
46
4
2
46
1.36
42440623--42440659
12
3.2
12
84
7
58
43
0
56
0
0.99
42440625--42440659
17
2.1
17
94
0
61
42
0
57
0
0.99
42440625--42440658
6
5.8
6
89
6
52
44
0
55
0
0.99
42442125--42442245
49
2.4
50
76
13
140
20
28
23
26
1.99
42449875--42450028
50
3.0
50
81
7
148
24
28
20
27
1.99
42474331--42474381
20
2.5
20
84
6
59
25
15
19
39
1.91
42476362--42476443
6
13.7
6
89
0
110
1
6
48
43
1.35
42476362--42476443
10
8.2
10
90
0
110
1
6
48
43
1.35
42476362--42476443
4
20.5
4
89
0
110
1
6
48
43
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42484223--42484268
24
1.9
24
86
0
65
45
17
26
10
1.81
42486522--42486569
10
4.9
10
89
5
71
87
10
2
0
0.62
42486525--42486574
7
6.5
8
84
11
61
88
10
2
0
0.61
42486525--42486574
18
2.7
18
90
6
73
88
10
2
0
0.61
42486524--42486569
21
2.2
21
92
0
74
89
8
2
0
0.57
42488137--42488263
43
2.9
44
70
16
111
27
22
24
25
2.00
42488257--42488904
132
4.9
132
92
1
960
27
18
23
29
1.98
42488347--42488841
44
11.2
43
66
9
160
27
17
24
30
1.97
42507584--42507621
18
2.1
18
85
9
51
44
5
15
34
1.69
42508199--42508440
102
2.4
101
89
5
357
39
4
10
45
1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218