genome.fa.s23.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  114  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33526687--33526754	26	2.6	26	80	2	64	16	20	23	39	1.91
33526709--33526780	26	2.8	26	86	0	99	16	18	22	43	1.88
33526900--33526956	28	2.1	27	90	3	87	22	26	26	24	2.00
33527707--33527778	27	2.7	26	74	4	72	33	13	25	27	1.94
33540050--33540077	3	9.3	3	100	0	56	67	0	0	32	0.91
33544201--33544239	19	2.1	19	85	0	51	28	17	2	51	1.59
33545288--33545415	36	3.6	35	78	8	107	43	31	11	13	1.80
33545288--33545379	35	2.6	36	79	8	107	43	31	10	14	1.79
33552248--33552360	35	3.2	35	83	5	120	44	25	12	17	1.84
33553435--33553464	12	2.5	12	94	0	51	6	20	40	33	1.78
33554269--33554436	84	2.0	84	97	0	318	35	14	19	30	1.92
33555361--33555628	137	2.0	137	81	1	313	36	26	17	19	1.94
33558463--33558566	52	2.0	52	98	0	199	30	12	11	45	1.78
33558469--33558550	26	3.2	26	60	0	65	32	12	9	45	1.74
33559640--33559686	24	2.0	24	95	0	85	29	17	14	38	1.89
33561298--33561322	8	3.1	8	100	0	50	24	0	0	76	0.80
33566106--33566144	14	2.8	14	88	0	51	43	2	0	53	1.14
33569061--33569127	18	3.8	18	71	13	59	43	7	14	34	1.74
33570767--33570816	12	4.0	13	75	15	52	36	0	40	24	1.55
33571471--33571613	27	5.3	27	83	4	191	42	21	16	19	1.89
33571474--33571624	80	1.9	80	88	4	232	41	23	15	20	1.90
33574959--33575261	55	5.4	55	88	3	340	43	14	10	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33574959--33575261	113	2.7	112	86	4	380	43	14	10	31	1.79
33576073--33576117	18	2.4	18	81	3	54	13	2	42	42	1.56
33583428--33583488	28	2.2	27	83	11	79	39	22	19	18	1.92
33583899--33584130	27	8.9	27	77	11	173	33	12	19	35	1.89
33583919--33584104	101	1.8	101	89	0	291	33	11	19	35	1.87
33587032--33587166	41	3.5	40	72	12	118	31	23	17	26	1.97
33587975--33588045	22	3.2	22	78	11	83	2	25	2	69	1.16
33588493--33588533	3	13.7	3	100	0	82	68	0	0	31	0.90
33591977--33592085	41	2.7	41	81	5	114	20	21	26	32	1.97
33596639--33596671	17	1.9	18	88	11	52	42	9	0	48	1.35
33603931--33603996	24	2.7	24	80	2	78	27	22	21	28	1.99
33603935--33604048	25	4.6	25	69	8	81	31	21	21	25	1.98
33617838--33617866	3	9.7	3	100	0	58	34	0	34	31	1.58
33619558--33619778	51	4.4	51	81	5	207	26	16	26	30	1.97
33631174--33631201	9	3.1	9	100	0	56	42	25	10	21	1.85
33634038--33634262	40	5.7	40	86	6	280	25	27	22	24	2.00
33634038--33634262	119	1.9	120	84	6	305	25	27	22	24	2.00
33639108--33639174	28	2.4	28	75	2	73	32	20	25	20	1.97
33639386--33639701	32	9.9	32	84	0	362	39	18	19	22	1.92
33639769--33640005	27	8.8	27	83	3	282	25	20	20	33	1.97
33639768--33640005	80	3.0	81	85	3	284	25	20	20	33	1.97
33639765--33640032	81	3.3	81	81	8	296	25	20	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33639769--33640032	54	4.9	54	82	6	216	25	20	20	34	1.96
33639984--33640036	27	2.0	27	92	0	88	24	18	20	35	1.95
33639994--33640081	27	3.3	26	81	10	97	25	13	18	43	1.86
33643154--33643218	22	3.0	21	75	4	67	44	16	21	16	1.86
33643235--33643476	32	7.6	32	89	0	313	39	21	19	19	1.92
33643627--33643701	23	3.2	23	79	5	69	48	25	4	22	1.68
33643637--33643703	23	2.9	23	81	2	71	47	23	4	23	1.70
33643716--33644138	27	15.7	27	85	0	531	25	20	19	35	1.95
33644117--33644178	27	2.3	27	88	0	88	17	11	25	45	1.82
33648104--33648135	16	2.0	17	88	11	50	37	0	6	56	1.25
33648437--33648484	20	2.4	20	86	6	62	6	31	20	41	1.77
33651035--33651081	20	2.3	20	81	0	58	23	12	34	29	1.92
33652751--33652856	48	2.2	48	85	9	137	14	24	1	59	1.45
33653902--33653956	23	2.3	24	81	9	69	5	14	5	74	1.18
33653938--33653972	11	3.2	11	91	0	52	14	5	5	74	1.19
33654469--33654886	209	2.0	210	99	0	829	38	16	21	24	1.93
33664571--33664602	14	2.3	14	100	0	64	21	12	6	59	1.55
33665026--33665103	39	2.0	39	100	0	156	33	25	17	23	1.96
33669379--33669629	69	3.6	69	85	1	324	30	8	15	45	1.75
33669379--33669629	138	1.8	138	87	0	376	30	8	15	45	1.75
33673115--33673183	26	2.7	26	81	0	84	27	26	21	24	1.99
33677129--33677199	25	2.9	25	89	2	99	38	18	15	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33677154--33677261	25	4.3	25	83	4	121	30	23	21	25	1.99
33690512--33690750	50	4.7	50	81	3	237	27	21	28	23	1.99
33709421--33709448	12	2.3	12	100	0	56	17	14	21	46	1.84
33709470--33709574	38	2.7	40	82	4	133	29	17	22	30	1.96
33713407--33713617	43	4.9	43	84	2	201	25	18	24	31	1.98
33713430--33713657	43	5.3	43	87	2	264	23	17	25	32	1.97
33719854--33720408	282	2.0	280	96	0	1020	34	18	14	32	1.91
33721431--33721489	23	2.6	22	86	13	84	16	8	22	52	1.70
33724363--33724415	7	7.4	7	75	12	54	35	1	3	58	1.27
33725902--33726439	120	4.5	120	97	0	977	42	2	5	49	1.38
33726156--33726202	16	3.0	16	78	12	53	46	0	2	51	1.13
33726651--33726688	16	2.4	16	90	0	67	26	34	2	36	1.71
33736976--33737007	14	2.3	15	89	10	50	43	6	0	50	1.27
33737833--33737890	22	2.6	21	79	17	64	74	0	12	13	1.08
33751454--33751575	61	2.0	61	100	0	244	45	8	21	24	1.78
33754377--33754413	13	2.5	15	87	12	51	5	0	8	86	0.70
33755681--33755717	9	4.1	9	86	13	58	32	10	10	45	1.74
33755771--33755801	9	3.4	9	90	0	53	38	22	12	25	1.90
33761278--33761319	22	2.0	22	85	4	59	14	14	38	33	1.86
33761248--33761416	71	2.4	71	80	5	189	19	17	26	36	1.94
33766624--33766654	16	1.9	16	93	0	53	70	9	9	9	1.33
33769032--33769115	35	2.4	35	78	11	91	23	16	23	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33771357--33771384	13	2.2	13	100	0	56	60	14	7	17	1.55
33772537--33772584	23	2.0	24	84	11	64	22	8	0	68	1.16
33776174--33776253	34	2.4	34	85	4	108	31	35	12	21	1.90
33777021--33777077	29	2.0	29	100	0	114	66	14	1	17	1.33
33785177--33785279	26	4.0	26	83	0	134	20	20	22	36	1.95
33785177--33785278	52	2.0	52	90	0	159	19	20	22	37	1.95
33785379--33785443	27	2.4	27	82	7	78	26	21	21	30	1.98
33786109--33786172	28	2.3	28	89	2	94	31	21	20	26	1.98
33786120--33786174	28	2.0	28	96	0	101	25	23	23	27	2.00
33786525--33786893	27	13.7	27	84	7	387	18	18	18	44	1.87
33786525--33786893	54	6.9	54	83	2	431	18	18	18	44	1.87
33793303--33793403	34	3.1	34	73	16	97	30	22	20	25	1.98
33793331--33793402	28	2.5	28	95	2	126	30	23	20	25	1.99
33793510--33793578	26	2.7	26	83	0	84	39	26	18	15	1.91
33793760--33794143	27	14.2	27	80	1	376	19	18	17	44	1.87
33799140--33799180	21	2.0	21	85	0	55	36	24	9	29	1.87
33801725--33801853	39	3.3	39	91	1	177	29	23	14	32	1.94
33810306--33810489	89	2.1	90	95	1	334	36	11	12	38	1.80
33812855--33812899	18	2.4	19	85	10	58	48	15	4	31	1.65
33816472--33816544	21	3.6	19	78	10	65	47	1	0	50	1.09
33816761--33816793	13	2.6	13	90	4	50	39	24	6	30	1.79
33816796--33816829	13	2.6	13	90	0	50	23	35	5	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33823716--33823755	18	2.2	18	86	0	53	2	15	0	82	0.77
33825973--33826016	20	2.3	19	81	14	54	52	0	2	45	1.13
33826891--33826916	5	5.2	5	100	0	52	23	0	0	76	0.78
33827954--33828005	21	2.5	20	81	9	68	53	3	0	42	1.19
33827954--33828017	21	3.2	19	81	14	67	51	4	1	42	1.32
33831375--33831448	22	3.4	21	74	9	67	12	28	16	43	1.83
33831375--33831458	44	1.9	44	82	0	105	14	28	15	41	1.86
33832188--33832254	30	2.2	30	86	0	89	23	17	23	34	1.96
33834263--33834291	5	5.8	5	100	0	58	82	0	0	17	0.66
33835228--33835285	16	3.2	18	71	24	50	24	20	0	55	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218