genome.fa.s23.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  78  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23166062--23166134	37	2.0	36	84	10	96	36	0	4	58	1.17
23181080--23181134	23	2.4	23	81	0	65	25	30	16	27	1.96
23181121--23181213	27	3.4	27	94	2	152	25	25	11	36	1.90
23183648--23183830	92	2.0	91	95	3	321	47	2	5	44	1.38
23186735--23186764	15	2.0	15	100	0	60	66	6	20	6	1.38
23198134--23198165	12	2.6	13	90	9	50	21	12	15	50	1.77
23211249--23211324	23	3.3	23	86	0	116	23	19	25	31	1.98
23217695--23217722	13	2.2	13	100	0	56	28	17	7	46	1.75
23219805--23220188	27	14.3	27	83	5	406	43	20	14	21	1.87
23235281--23235529	40	6.3	40	79	2	234	40	26	18	14	1.89
23235299--23235538	80	3.0	80	79	3	279	41	24	18	15	1.89
23241685--23241778	45	2.1	45	89	0	143	30	24	18	26	1.97
23241775--23241967	51	3.8	49	78	5	190	31	26	18	23	1.97
23241782--23241966	101	1.8	101	87	3	273	31	26	17	23	1.97
23244156--23244190	13	2.7	13	86	0	52	82	5	8	2	0.91
23252590--23252615	5	5.2	5	100	0	52	61	0	0	38	0.96
23254431--23254477	24	2.0	24	83	8	60	76	8	6	8	1.15
23261257--23261317	30	2.0	30	100	0	122	47	6	16	29	1.72
23273414--23273485	29	2.4	29	77	13	74	47	4	6	41	1.50
23274231--23274274	18	2.4	18	85	7	54	29	0	2	68	1.02
23274867--23274933	5	13.6	5	90	6	102	38	0	1	59	1.06
23282329--23282368	7	5.9	7	85	5	55	80	0	0	20	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23284513--23284565	11	4.6	11	76	15	54	60	5	5	28	1.42
23286167--23286733	50	11.4	50	69	5	290	22	18	21	36	1.95
23286152--23286748	100	6.0	100	87	0	800	23	19	21	35	1.96
23286899--23287023	44	2.8	44	81	0	160	32	27	14	26	1.95
23286997--23287159	88	1.9	88	80	7	197	25	25	22	27	2.00
23287023--23287213	88	2.2	88	81	3	215	23	24	23	29	1.99
23287204--23287674	131	3.6	131	90	1	739	25	24	19	30	1.98
23287203--23287680	261	1.8	262	89	1	753	26	24	19	30	1.98
23290000--23290039	21	1.9	21	84	0	53	7	15	0	77	0.98
23290035--23290104	29	2.4	30	76	9	74	11	5	7	75	1.17
23291134--23291199	25	2.6	25	83	9	80	59	6	12	22	1.55
23292372--23292415	21	2.1	21	100	0	88	45	13	4	36	1.64
23294509--23294561	11	4.6	11	76	15	54	60	5	5	28	1.42
23298290--23298335	20	2.4	18	82	10	56	2	21	0	76	0.90
23298322--23298371	15	3.3	15	75	5	55	8	20	4	68	1.32
23301306--23301352	20	2.3	20	85	7	60	61	2	2	34	1.20
23301564--23301618	18	2.9	19	76	10	60	65	0	3	30	1.10
23303854--23303901	14	3.4	14	79	0	51	20	4	31	43	1.71
23309005--23309039	18	1.9	18	100	0	70	31	5	22	40	1.78
23315877--23315922	7	6.4	7	87	5	65	32	0	50	17	1.47
23325433--23325594	45	3.6	45	79	5	168	41	16	21	20	1.89
23325433--23325606	90	1.9	88	85	6	233	40	17	21	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23329321--23329374	20	2.7	20	85	2	72	22	24	38	14	1.91
23330735--23330811	28	2.8	28	79	0	82	32	18	16	32	1.93
23330766--23330806	14	2.9	14	81	0	55	24	21	24	29	1.99
23344620--23344680	26	2.3	27	82	2	79	44	1	1	52	1.20
23344644--23344695	19	2.7	20	82	11	63	42	1	3	51	1.31
23346973--23347031	31	1.9	31	89	0	91	37	25	18	18	1.94
23347461--23347532	10	7.3	10	73	19	53	29	4	2	63	1.27
23354526--23354555	6	4.8	6	92	8	51	36	0	0	63	0.95
23354526--23354555	13	2.4	12	94	5	51	36	0	0	63	0.95
23354547--23354591	19	2.3	20	76	3	56	37	0	2	60	1.09
23354731--23354769	19	2.2	17	90	9	60	71	0	10	17	1.12
23354719--23354769	17	2.8	18	85	14	70	66	0	11	21	1.23
23354762--23354869	54	2.0	54	100	0	216	42	5	11	40	1.64
23355151--23355190	7	5.7	7	100	0	80	72	0	0	27	0.85
23355966--23355997	3	10.7	3	100	0	64	65	0	0	34	0.93
23356487--23356564	29	2.7	29	81	0	93	34	26	23	15	1.94
23356625--23356768	78	1.9	75	80	11	168	25	0	23	50	1.55
23356756--23356822	26	2.5	26	81	11	82	38	1	25	34	1.65
23361805--23361843	19	2.1	19	100	0	78	23	15	35	25	1.94
23367290--23367330	20	2.0	20	85	9	55	53	0	0	46	1.00
23386235--23386276	15	2.8	15	82	17	52	28	2	0	69	1.01
23386235--23386278	18	2.4	18	88	7	63	27	2	0	70	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23386273--23386342	24	3.0	24	83	6	81	37	11	4	47	1.59
23386281--23386351	24	3.0	24	81	6	65	39	11	4	45	1.60
23386340--23386376	14	2.7	14	88	12	51	32	0	0	67	0.91
23386385--23386423	18	2.2	17	86	4	51	35	7	0	56	1.28
23386602--23386763	12	13.2	12	88	4	90	47	14	0	37	1.49
23386641--23386763	6	20.5	6	98	0	237	50	15	0	34	1.44
23398981--23399098	50	2.4	50	81	5	139	23	24	24	27	2.00
23399167--23399433	50	5.4	50	69	2	205	28	20	25	25	1.99
23399173--23399483	100	3.1	100	90	0	480	29	20	24	26	1.99
23399245--23399483	50	4.8	50	70	4	151	29	20	22	27	1.98
23399490--23399795	42	7.2	42	70	5	188	31	17	19	31	1.95
23399528--23399722	41	4.6	42	73	9	128	29	19	20	30	1.97
23399474--23399820	127	2.7	128	86	4	481	32	16	20	29	1.95
23401196--23401248	24	2.3	23	83	9	63	37	11	3	47	1.58
23401213--23401261	25	2.0	24	88	4	71	36	10	6	46	1.63
23401214--23401270	25	2.4	24	82	8	64	36	7	5	50	1.52
23401301--23401339	18	2.2	17	86	4	51	35	7	0	56	1.28
23402173--23402213	15	2.7	16	78	21	52	31	2	0	65	1.05
23402206--23402273	25	2.8	24	81	4	73	38	11	4	45	1.61
23402227--23402282	25	2.4	24	82	8	62	35	7	5	51	1.52
23402314--23402352	18	2.2	17	86	4	51	35	7	0	56	1.28
23404128--23404223	31	3.1	31	95	3	174	31	9	13	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23404774--23404861	11	8.7	11	70	20	68	72	13	12	1	1.17
23404771--23404880	9	11.4	9	70	22	73	72	13	12	0	1.17
23404771--23404833	20	3.2	20	82	13	87	74	14	11	0	1.07
23404806--23404863	20	2.8	20	84	5	80	70	12	15	1	1.24
23404775--23404880	49	2.2	48	86	8	144	71	14	13	0	1.19
23404788--23404869	20	4.1	20	75	9	60	74	12	12	1	1.14
23404771--23404852	20	4.2	19	78	12	78	73	13	12	1	1.17
23409804--23409899	31	3.1	31	92	3	156	32	10	12	44	1.76
23415640--23415693	26	2.1	26	83	10	67	53	7	0	38	1.29
23418825--23418855	13	2.5	13	94	5	55	41	41	6	9	1.63
23419606--23419633	11	2.5	11	100	0	56	39	39	21	0	1.54
23419956--23420063	3	34.7	3	75	14	85	26	6	0	65	1.23
23419956--23420013	16	3.5	16	92	4	89	27	6	0	65	1.18
23419971--23420030	31	1.9	31	86	6	86	33	6	0	60	1.23
23420071--23420104	16	2.2	16	89	5	52	29	0	5	64	1.17
23420147--23420237	47	1.9	47	80	8	105	39	12	1	47	1.48
23422744--23422787	20	2.2	20	83	0	52	18	22	34	25	1.96
23425202--23425383	41	4.4	41	84	4	145	21	29	19	29	1.98
23425243--23425401	41	3.9	41	82	6	196	22	29	20	27	1.99
23430655--23430781	61	2.1	59	82	8	150	40	14	7	37	1.73
23434774--23434812	19	2.1	19	100	0	78	20	25	30	23	1.98
23439478--23439508	16	1.9	16	93	0	53	16	0	0	83	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23439505--23439530	11	2.4	11	100	0	52	38	0	0	61	0.96
23439513--23439565	28	1.9	28	96	3	99	28	0	0	71	0.86
23439577--23439606	15	1.9	16	93	6	53	6	36	53	3	1.44
23441069--23441123	19	2.9	19	79	12	51	32	0	7	60	1.24
23450109--23450156	24	2.0	24	88	8	71	37	12	2	47	1.53
23450123--23450156	12	2.8	13	86	13	54	38	11	0	50	1.39
23456718--23457436	84	8.5	84	90	4	951	21	21	22	35	1.96
23456763--23457437	128	5.3	124	83	9	810	20	21	22	34	1.96
23456718--23457436	212	3.4	210	88	6	946	21	21	22	35	1.96
23457436--23457692	87	3.0	87	93	1	435	24	23	22	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218