genome.fa.s23.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  129  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39297709--39297899	61	3.2	61	73	11	230	43	1	4	50	1.30
39297659--39297934	120	2.3	120	97	0	525	42	1	4	51	1.30
39297723--39297914	56	3.3	55	73	19	199	43	1	4	51	1.28
39297782--39297835	26	2.1	25	89	3	81	44	0	1	53	1.11
39297480--39297896	222	1.9	220	94	1	744	42	1	5	50	1.36
39301192--39301238	23	2.0	22	84	15	60	34	2	2	61	1.20
39302155--39302206	24	2.2	24	96	0	95	38	9	0	51	1.35
39303755--39303800	21	2.2	21	88	0	65	71	13	8	6	1.29
39305582--39305606	5	5.0	5	100	0	50	80	0	0	20	0.72
39305576--39305612	15	2.4	16	82	13	51	72	2	5	18	1.15
39308240--39308265	10	2.6	10	100	0	52	23	0	7	69	1.14
39310229--39310266	17	2.2	17	86	9	51	21	5	2	71	1.19
39312216--39312324	33	3.3	32	77	14	116	56	4	2	35	1.34
39314394--39314424	5	6.2	5	92	0	53	22	19	35	22	1.96
39315777--39315815	19	2.1	18	90	4	60	66	0	28	5	1.12
39316258--39316308	22	2.4	20	78	15	57	76	1	3	17	1.03
39319842--39320053	40	5.3	40	80	2	248	24	20	27	27	1.99
39319846--39320062	80	2.7	79	88	3	310	24	21	27	26	1.99
39327912--39328122	40	5.3	40	78	4	230	24	20	27	27	1.99
39327916--39328131	79	2.7	79	87	4	292	24	20	28	26	1.99
39337683--39337724	21	2.0	21	86	13	61	54	4	11	28	1.57
39339419--39339517	41	2.4	41	94	0	171	20	26	7	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39355481--39355538	30	1.9	30	89	0	89	36	5	25	32	1.78
39355875--39356173	50	5.9	50	81	5	293	27	21	27	23	1.99
39359192--39359228	18	2.1	18	100	0	74	40	16	21	21	1.91
39363234--39363281	21	2.3	21	82	10	55	22	16	18	41	1.90
39368751--39368821	20	3.6	20	75	3	81	8	23	22	45	1.80
39375997--39376042	23	2.0	24	83	12	60	36	10	2	50	1.50
39377928--39378185	129	2.0	129	100	0	516	36	1	20	41	1.62
39379089--39379136	25	2.0	25	83	4	62	39	4	0	56	1.19
39382589--39382639	23	2.1	26	89	10	81	56	0	0	43	0.99
39382598--39382639	12	3.2	13	80	12	50	59	0	0	40	0.97
39387684--39387720	18	2.0	19	89	5	58	75	2	16	5	1.10
39392352--39392410	26	2.3	26	90	0	91	42	15	13	28	1.85
39400148--39400271	46	2.7	46	93	0	212	40	11	3	45	1.56
39400407--39400466	24	2.6	23	83	2	75	25	13	20	41	1.88
39405117--39405215	46	2.2	43	81	12	110	33	23	19	24	1.97
39405215--39405336	51	2.4	51	85	8	160	31	29	13	26	1.93
39406430--39406482	23	2.3	23	90	0	88	20	18	26	33	1.96
39412824--39412959	50	2.7	51	85	4	195	24	15	28	31	1.95
39412970--39413058	45	2.0	45	88	0	133	26	16	22	33	1.96
39417820--39417963	49	2.9	50	74	2	146	31	16	25	26	1.96
39419707--39419770	28	2.3	27	82	12	69	18	1	17	62	1.41
39421646--39421690	23	1.9	24	86	13	67	26	11	11	51	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39423125--39423161	19	1.9	19	94	0	65	35	0	0	64	0.94
39423130--39423171	19	2.2	19	83	8	50	40	0	0	59	0.97
39424139--39424197	31	1.9	31	85	0	82	59	5	6	28	1.45
39424151--39424193	23	1.9	23	90	4	70	58	4	6	30	1.45
39434550--39434586	19	2.0	18	89	5	56	27	8	5	59	1.48
39436485--39436530	19	2.4	19	92	7	76	47	2	0	50	1.13
39436934--39436997	22	3.0	21	78	17	71	26	0	28	45	1.54
39436934--39437054	42	2.9	41	81	3	118	25	0	21	52	1.53
39437000--39437037	19	2.1	18	85	14	51	23	0	10	65	1.23
39437146--39437209	28	2.2	28	88	2	92	43	4	20	31	1.72
39449450--39449564	44	2.7	43	77	14	128	30	28	15	25	1.96
39454841--39454868	7	4.0	7	100	0	56	42	28	0	28	1.56
39459414--39459459	18	2.6	18	86	3	58	43	0	2	54	1.12
39459410--39459489	28	2.9	27	76	12	81	43	0	1	55	1.08
39459297--39459723	120	3.5	120	96	2	793	42	0	4	52	1.26
39459925--39459966	16	2.6	16	88	7	59	23	30	7	38	1.82
39465791--39465828	14	2.6	14	84	15	51	68	0	28	2	1.03
39487093--39487192	38	2.6	38	85	4	130	39	5	6	50	1.49
39491117--39491178	29	2.1	29	96	0	115	35	14	17	32	1.90
39496614--39496751	66	2.1	66	88	6	201	34	24	4	36	1.75
39507027--39507060	7	5.0	7	85	7	52	14	11	0	73	1.10
39507040--39507143	51	2.1	49	80	10	113	28	15	8	47	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39508376--39508416	17	2.5	17	81	18	52	31	2	24	41	1.68
39513374--39513408	18	1.9	18	88	0	52	17	42	22	17	1.88
39517366--39517404	5	7.6	5	86	13	53	79	2	0	17	0.84
39517388--39517584	75	2.6	75	86	1	261	61	8	15	15	1.55
39524817--39524994	27	6.6	27	74	6	119	28	16	26	29	1.97
39524814--39524994	82	2.2	81	81	4	204	28	16	25	29	1.97
39532823--39533000	27	6.6	27	74	6	119	28	16	26	29	1.97
39532820--39533000	82	2.2	81	81	4	204	28	16	25	29	1.97
39540825--39540862	6	6.3	6	100	0	76	52	15	0	31	1.43
39541106--39541171	31	2.1	31	86	5	89	33	13	12	40	1.82
39541755--39541779	1	25.0	1	100	0	50	100	0	0	0	0.00
39542492--39542534	22	2.0	22	95	4	79	39	4	4	51	1.44
39544255--39544283	5	5.8	5	100	0	58	0	58	0	41	0.98
39546814--39546871	26	2.2	26	82	11	66	56	3	8	31	1.46
39547386--39547623	23	10.1	24	70	13	111	40	19	13	26	1.89
39547459--39547655	23	8.5	23	74	4	180	41	16	16	25	1.89
39547439--39547657	70	3.1	70	84	2	278	41	17	15	26	1.89
39547459--39547655	47	4.2	46	75	11	168	41	16	16	25	1.89
39549344--39549455	40	2.8	39	82	8	127	15	30	17	36	1.91
39549342--39549508	20	8.3	19	70	11	93	12	29	18	38	1.88
39549384--39549509	42	3.0	42	80	6	116	10	30	19	39	1.85
39550964--39550990	5	5.4	5	100	0	54	0	0	18	81	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39556384--39556452	30	2.3	30	87	0	93	30	8	30	30	1.87
39561854--39561885	13	2.4	13	94	5	55	21	6	0	71	1.07
39565069--39565109	20	2.0	20	95	0	73	53	41	0	4	1.22
39565704--39565732	9	3.3	9	90	9	51	75	0	0	24	0.80
39568915--39568971	28	2.0	28	96	0	105	35	17	19	28	1.94
39571975--39572124	43	3.5	43	86	0	194	30	26	18	25	1.98
39571961--39572124	86	1.9	87	87	1	240	28	26	18	26	1.98
39572821--39572872	23	2.3	23	79	0	59	34	7	30	26	1.85
39574945--39575011	31	2.2	31	94	0	116	50	8	20	19	1.74
39576610--39576672	26	2.4	26	89	0	90	34	41	6	17	1.75
39577499--39577864	41	8.9	41	86	0	462	29	27	22	20	1.98
39577501--39577864	165	2.2	164	87	0	548	29	27	22	20	1.98
39577918--39577994	39	2.0	40	92	2	129	23	14	20	41	1.89
39580050--39580104	24	2.4	23	93	6	94	38	7	3	50	1.48
39583563--39583619	29	2.0	29	96	0	105	19	21	28	31	1.97
39584577--39584690	34	3.3	34	79	8	104	40	16	7	35	1.78
39584857--39585127	41	6.6	41	89	1	409	24	27	18	29	1.98
39585517--39585563	23	2.0	23	95	0	85	42	29	2	25	1.67
39593906--39594100	51	3.8	51	77	7	200	25	17	27	29	1.98
39603766--39603888	50	2.5	50	77	2	133	29	22	26	21	1.99
39611430--39611566	56	2.6	50	82	7	150	24	20	29	24	1.99
39614375--39614507	43	3.1	43	79	4	126	24	20	19	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39616559--39616601	21	2.0	22	86	4	61	39	0	4	55	1.20
39616632--39616671	20	2.0	20	95	0	71	52	35	0	12	1.39
39617411--39617509	50	2.0	49	84	5	128	29	14	11	45	1.79
39620434--39620482	18	2.7	18	87	0	71	57	18	10	14	1.65
39624686--39624726	13	3.2	13	75	25	50	0	31	21	46	1.52
39636541--39636579	2	19.5	2	100	0	78	51	0	48	0	1.00
39642916--39642960	22	2.1	21	83	4	54	13	20	2	64	1.38
39662567--39662603	13	2.8	13	91	0	56	51	16	0	32	1.45
39668077--39668147	35	2.0	35	100	0	142	25	5	39	29	1.78
39670933--39670981	21	2.4	22	83	10	59	40	6	0	53	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218