genome.fa.s23.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  168  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50965738--50965787	15	3.1	15	85	8	64	42	0	14	44	1.44
50965756--50965793	18	2.1	18	90	0	58	47	0	13	39	1.42
50965777--50965835	26	2.5	23	80	17	75	45	0	8	45	1.33
50965788--50965839	26	2.0	26	100	0	104	46	0	11	42	1.40
50966126--50966191	28	2.4	28	97	0	123	48	0	10	40	1.38
50969248--50969322	27	2.8	26	78	8	78	34	14	16	34	1.89
50972403--50972518	43	2.7	43	82	4	119	28	16	25	30	1.97
50977048--50977375	163	2.0	163	94	1	577	32	10	22	34	1.88
50978311--50978429	43	2.8	43	83	6	127	28	15	24	31	1.96
50991594--50991674	29	2.7	30	86	5	110	45	13	8	32	1.74
50992218--50992271	28	1.9	28	84	0	72	24	7	7	61	1.49
51021062--51021756	44	15.5	44	76	9	602	29	22	18	30	1.97
51021113--51021756	225	2.9	226	84	5	724	29	22	18	29	1.97
51031463--51031493	16	1.9	16	93	0	53	58	0	0	41	0.98
51036893--51036918	7	3.7	7	100	0	52	46	11	0	42	1.40
51038976--51039027	22	2.4	21	87	3	68	15	15	13	55	1.69
51038976--51039027	7	7.3	7	82	4	68	15	15	13	55	1.69
51039429--51039487	24	2.7	22	85	14	86	27	15	3	54	1.57
51039437--51039486	24	2.1	24	100	0	100	28	12	4	56	1.54
51039655--51039751	17	5.4	17	66	14	61	31	4	14	49	1.62
51039650--51039794	37	3.9	37	96	1	256	33	4	13	47	1.64
51039650--51039794	73	2.0	74	94	1	256	33	4	13	47	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51039794--51039904	9	12.4	9	86	1	152	32	9	24	33	1.88
51039794--51039904	27	4.1	27	87	2	170	32	9	24	33	1.88
51040295--51040388	49	1.9	49	93	0	161	24	24	7	43	1.80
51041802--51041852	26	2.0	26	100	0	102	19	25	31	23	1.98
51041761--51041893	67	2.0	67	93	0	230	28	21	26	24	1.99
51041828--51041966	41	3.4	41	85	3	181	28	17	26	27	1.97
51045607--51045661	3	18.3	3	84	0	56	56	7	3	32	1.44
51050733--51050778	21	2.2	21	81	14	51	36	2	2	58	1.22
51050755--51050884	58	2.3	54	78	12	134	41	1	3	53	1.28
51050770--51050897	58	2.2	58	84	5	159	43	1	3	51	1.26
51051332--51051380	24	2.0	25	88	11	75	30	0	0	69	0.89
51056844--51056897	25	2.2	25	93	0	90	38	3	1	55	1.28
51057247--51057291	23	2.0	22	83	12	56	26	2	8	62	1.37
51060105--51060131	6	4.5	6	100	0	54	70	0	0	29	0.88
51060311--51060356	19	2.4	19	88	0	74	54	6	0	39	1.26
51060323--51060417	44	2.2	42	81	12	104	45	4	2	48	1.33
51064401--51064442	21	2.0	21	90	4	68	2	26	0	71	0.98
51064520--51064552	13	2.6	13	90	4	50	57	0	3	39	1.14
51066092--51066155	27	2.4	27	78	0	74	35	17	15	31	1.91
51066420--51066488	33	2.2	31	87	10	95	30	20	24	24	1.99
51072338--51072481	42	3.4	41	85	6	191	27	13	27	31	1.94
51072344--51072528	84	2.2	84	81	9	209	28	14	25	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51074800--51075001	41	5.0	41	85	7	252	33	27	18	20	1.96
51075647--51075681	17	2.1	17	89	5	54	31	14	5	48	1.67
51079140--51079181	21	2.0	21	86	9	59	45	2	21	30	1.65
51085417--51085460	22	2.0	22	82	8	54	22	11	4	61	1.48
51091435--51091459	7	3.6	7	100	0	50	72	0	0	28	0.86
51092588--51092649	29	2.1	30	84	6	81	40	14	0	45	1.45
51094262--51094293	15	2.1	15	100	0	64	25	15	12	46	1.81
51099844--51099927	37	2.3	37	100	0	168	45	8	4	41	1.55
51099967--51100015	25	2.0	24	88	4	71	48	2	10	38	1.48
51102179--51102243	15	4.3	15	70	14	53	30	32	1	35	1.67
51111659--51111712	16	3.4	16	84	0	72	33	3	35	27	1.75
51111691--51111781	45	2.0	44	85	6	121	32	4	27	35	1.77
51111926--51111967	15	2.7	16	82	14	52	52	2	0	45	1.13
51111935--51111976	15	2.9	15	82	10	52	52	0	0	47	1.00
51112022--51112096	15	5.3	15	73	20	63	54	2	0	42	1.14
51111929--51112338	120	3.4	120	94	2	711	50	5	1	42	1.35
51112379--51112439	28	2.2	28	85	5	81	50	3	0	45	1.17
51112386--51112529	47	3.1	46	64	23	104	48	4	2	45	1.33
51112354--51112561	91	2.3	90	89	4	317	46	4	3	46	1.39
51112379--51112521	44	3.2	43	69	16	119	47	3	2	46	1.31
51112407--51112542	44	3.0	47	69	18	140	48	4	2	44	1.35
51116030--51116054	9	2.8	9	100	0	50	24	12	0	64	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51121095--51121334	84	2.8	85	79	6	254	22	15	20	41	1.90
51126851--51126887	9	4.1	9	92	0	65	29	10	13	45	1.77
51129274--51129330	20	2.9	20	77	12	64	38	3	1	56	1.27
51129276--51129358	39	2.1	40	84	10	109	36	3	2	57	1.29
51136964--51137027	23	2.9	21	76	17	58	76	1	6	15	1.06
51136988--51137021	17	1.9	18	88	5	52	79	0	5	14	0.91
51137086--51137138	26	2.0	25	85	7	70	77	3	0	18	0.92
51141739--51141796	24	2.5	23	76	20	59	43	0	1	55	1.10
51142517--51142551	17	2.1	17	94	0	61	31	0	0	68	0.90
51143006--51143125	62	2.0	62	88	1	179	47	6	6	39	1.56
51143670--51143723	26	2.1	26	86	3	74	66	7	0	25	1.17
51143676--51143725	20	2.5	19	81	15	57	70	6	0	24	1.10
51147265--51147305	21	2.0	21	85	0	55	12	0	29	58	1.34
51152519--51152548	15	2.0	15	93	0	51	10	20	30	40	1.85
51169602--51170157	276	2.0	276	95	0	1004	39	18	15	27	1.90
51170310--51170341	8	4.0	8	95	0	55	53	12	0	34	1.39
51171546--51171576	15	2.1	15	93	0	53	45	0	3	51	1.17
51181599--51181661	33	2.0	32	84	6	83	30	23	22	23	1.99
51181699--51181837	43	3.2	43	86	1	188	27	23	17	30	1.97
51181713--51181851	43	3.2	41	82	8	152	26	25	17	30	1.98
51185975--51186107	42	3.3	42	69	18	129	39	1	8	51	1.41
51186526--51186679	81	1.9	81	90	2	247	46	18	1	34	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51186721--51186772	7	7.4	7	84	0	59	32	44	0	23	1.54
51186904--51187086	41	4.4	40	84	4	197	28	27	19	24	1.99
51186904--51187091	81	2.3	81	81	9	220	27	28	19	23	1.99
51187173--51187288	40	2.9	40	89	0	187	20	21	23	34	1.97
51192553--51192690	54	2.6	54	97	0	258	30	23	18	26	1.98
51202188--51202319	54	2.4	54	79	7	142	30	19	24	25	1.98
51204239--51204284	13	3.7	13	83	13	53	52	21	8	17	1.71
51204264--51204297	11	3.1	11	91	0	50	58	17	11	11	1.62
51206104--51206140	18	2.1	18	94	0	65	24	8	5	62	1.44
51206099--51206142	23	1.9	23	90	9	72	22	9	6	61	1.50
51206131--51206180	6	9.2	6	87	12	65	34	0	18	48	1.48
51206132--51206180	11	4.5	11	87	12	75	34	0	18	46	1.49
51206133--51206174	20	2.0	21	95	4	77	33	0	19	47	1.49
51206132--51206183	26	2.0	26	92	7	88	34	0	19	46	1.50
51207612--51207652	22	1.9	22	85	5	57	63	14	4	17	1.47
51208375--51208420	24	1.9	24	100	0	92	39	15	10	34	1.82
51214985--51215024	21	1.9	21	100	0	80	20	25	15	40	1.90
51215637--51215722	45	1.9	45	95	0	154	36	10	22	31	1.88
51219619--51219659	18	2.3	18	87	4	57	36	17	12	34	1.87
51226533--51226830	147	2.0	148	89	5	460	38	12	6	42	1.68
51227623--51227681	22	2.7	22	72	15	59	42	0	6	50	1.28
51228266--51228346	40	2.0	40	95	0	144	43	14	17	24	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51230556--51230662	45	2.4	45	83	0	142	41	16	17	24	1.90
51230862--51230947	40	2.1	42	84	4	113	41	19	6	31	1.78
51235318--51235359	5	8.6	5	85	15	61	40	0	0	59	0.97
51235948--51235992	23	1.9	24	86	13	67	55	2	22	20	1.54
51237648--51237712	32	2.1	31	91	2	103	38	12	10	38	1.78
51239213--51239242	11	2.6	11	94	5	51	36	3	0	60	1.14
51249070--51249098	11	2.6	11	100	0	58	20	27	6	44	1.77
51249104--51249147	12	3.8	12	81	3	54	40	0	0	59	0.98
51250249--51250273	7	3.6	7	100	0	50	28	0	12	60	1.32
51250924--51250961	18	2.1	18	95	0	67	23	28	7	39	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218