genome.fa.s4.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  103  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35543938--35544769	255	3.4	245	81	8	698	35	18	16	29	1.93
35544529--35544878	149	2.3	147	83	4	432	32	18	16	31	1.94
35544832--35544927	49	2.0	49	97	0	183	32	20	16	30	1.95
35544760--35544999	121	2.0	121	94	0	417	34	18	15	30	1.93
35544881--35545178	72	4.0	72	88	8	429	33	18	16	30	1.94
35544686--35545071	193	2.0	195	91	2	623	33	18	15	32	1.92
35545143--35545285	54	2.6	54	91	1	223	35	21	16	26	1.94
35545281--35545314	13	2.5	13	90	4	50	58	8	11	20	1.59
35545336--35545440	54	1.9	53	83	7	131	37	19	15	28	1.92
35545477--35545581	54	1.9	54	84	9	142	38	20	16	25	1.92
35545617--35545721	54	1.9	54	84	9	142	38	20	16	25	1.92
35545197--35545776	140	4.1	140	96	0	1052	36	21	16	25	1.94
35545718--35545877	72	2.2	72	89	1	241	41	21	14	22	1.89
35545752--35545997	121	2.0	124	89	3	383	39	21	13	24	1.90
35545877--35546050	71	2.5	69	85	4	208	34	22	14	28	1.93
35561473--35561538	14	4.3	15	73	19	55	45	0	1	53	1.09
35561557--35561593	16	2.3	16	86	13	58	40	0	0	59	0.97
35561605--35561660	22	2.6	22	83	5	62	51	0	0	48	1.00
35567328--35567778	93	4.8	93	96	0	794	31	29	16	22	1.96
35567382--35567722	47	7.3	47	71	20	286	31	30	16	22	1.95
35567325--35567793	46	10.1	46	70	16	274	31	29	16	22	1.96
35569317--35569420	53	2.0	53	84	0	136	32	15	25	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35569541--35569672	61	2.2	61	88	0	192	30	15	25	28	1.96
35569637--35569705	29	2.4	29	92	2	122	27	18	24	28	1.98
35569576--35569763	89	2.1	90	84	4	238	31	17	21	28	1.96
35569668--35569782	61	1.9	61	83	5	153	33	17	20	27	1.95
35570468--35570625	5	31.2	5	84	7	194	38	0	1	59	1.08
35571891--35571947	15	3.9	15	88	2	89	35	0	12	52	1.39
35572319--35572405	21	4.0	23	80	10	92	14	21	25	37	1.92
35576957--35576981	8	3.1	8	100	0	50	36	0	0	64	0.94
35577004--35577039	5	7.4	5	93	6	65	41	0	0	58	0.98
35578310--35578366	15	3.9	15	88	2	89	35	0	12	52	1.39
35578738--35578824	21	4.0	23	80	10	92	14	21	25	37	1.92
35587118--35587285	46	3.6	45	78	10	160	26	20	28	24	1.99
35588970--35589147	27	6.6	27	83	3	196	27	15	27	29	1.96
35588971--35589126	82	1.9	81	86	3	224	27	15	27	29	1.96
35588967--35589147	82	2.2	81	82	2	220	27	15	27	29	1.96
35595099--35595123	11	2.3	11	100	0	50	0	8	0	92	0.40
35595548--35595793	41	6.0	41	90	2	316	29	20	27	22	1.99
35595832--35595903	37	1.9	37	85	0	99	45	33	0	20	1.52
35596014--35596077	7	9.0	7	77	3	56	23	3	26	46	1.67
35596030--35596080	15	3.5	15	81	2	59	21	1	29	47	1.62
35596671--35596722	8	7.1	8	77	16	51	65	1	1	30	1.14
35604716--35604757	21	2.0	21	95	0	75	14	30	28	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35606912--35607136	40	5.6	40	83	2	272	23	26	24	25	2.00
35612108--35612248	43	3.3	43	90	0	210	24	15	29	30	1.96
35616587--35616617	11	2.8	11	100	0	62	48	0	0	51	1.00
35617869--35617926	26	2.2	26	84	0	71	18	20	20	39	1.92
35617940--35618007	25	2.8	24	70	16	59	20	23	22	33	1.97
35622025--35622055	5	6.2	5	100	0	62	38	0	0	61	0.96
35622022--35622062	15	2.7	16	88	11	68	39	0	0	60	0.96
35623137--35623235	45	2.2	45	87	3	146	25	17	16	41	1.89
35623227--35623261	18	1.9	18	88	0	52	17	25	17	40	1.90
35624235--35624267	4	8.8	4	87	12	52	75	0	0	24	0.80
35624236--35624270	7	5.0	7	90	10	54	74	0	0	25	0.82
35623990--35624648	257	2.6	257	98	0	1257	41	5	14	37	1.70
35624492--35624524	4	8.8	4	87	12	52	75	0	0	24	0.80
35624493--35624527	7	5.0	7	90	10	54	74	0	0	25	0.82
35628380--35628437	26	2.2	26	87	0	80	18	24	18	37	1.94
35628480--35628526	24	2.0	24	91	0	76	14	23	25	36	1.93
35629085--35629185	52	1.9	52	97	0	193	36	22	10	29	1.89
35629556--35629611	29	1.9	29	88	0	85	25	33	12	28	1.92
35634489--35634571	31	2.8	29	78	12	71	36	7	10	45	1.67
35635435--35635500	21	3.2	21	70	12	73	33	22	12	31	1.91
35636751--35636808	28	2.1	28	96	0	107	32	22	17	27	1.96
35636829--35636881	26	2.0	26	82	10	63	32	20	16	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35637046--35637108	17	3.7	17	80	0	63	44	25	11	19	1.83
35637104--35637132	2	14.5	2	100	0	58	51	48	0	0	1.00
35640385--35640414	15	1.9	16	93	6	53	53	6	20	20	1.67
35645509--35645550	21	2.0	21	100	0	84	38	42	4	14	1.66
35650215--35650262	13	3.5	13	76	15	51	64	6	0	29	1.18
35654692--35654865	94	1.9	94	83	0	231	21	30	21	26	1.98
35665521--35665559	18	2.2	18	100	0	78	30	15	10	43	1.80
35667312--35667432	46	2.7	44	87	8	172	23	28	19	27	1.99
35678400--35678439	19	2.1	19	86	9	55	60	5	0	35	1.19
35681397--35681541	72	2.0	72	100	0	290	33	23	23	20	1.97
35681473--35681619	48	3.1	48	82	11	162	30	23	25	20	1.98
35688955--35689076	46	2.6	46	80	5	138	33	21	22	22	1.97
35689629--35689678	25	2.0	25	96	0	91	30	28	22	20	1.98
35694461--35694523	32	2.0	32	81	12	76	33	9	17	39	1.82
35695469--35695493	11	2.3	11	100	0	50	72	0	0	28	0.86
35696946--35696991	23	2.0	24	86	4	67	36	2	2	58	1.22
35700624--35700741	59	2.0	59	94	0	209	31	16	15	36	1.90
35710952--35710999	22	2.2	22	85	7	62	62	2	10	25	1.38
35715089--35715118	15	2.0	15	93	0	51	3	13	33	50	1.58
35715749--35715786	20	1.9	20	88	0	58	50	10	2	36	1.51
35722025--35722067	6	6.8	6	79	10	50	79	0	4	16	0.90
35722028--35722067	13	3.1	13	88	0	62	80	0	5	15	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35723603--35723647	3	15.0	3	81	9	56	62	0	6	31	1.21
35730148--35730197	22	2.2	23	82	7	57	66	6	6	22	1.36
35731949--35731982	18	1.9	18	94	5	61	58	0	11	29	1.33
35732676--35732725	10	5.0	10	86	13	68	70	2	8	20	1.23
35739034--35739114	26	3.1	26	67	19	69	23	11	28	37	1.89
35739324--35739353	16	1.9	15	93	6	51	43	0	23	33	1.54
35742461--35742485	3	8.3	3	100	0	50	68	0	0	32	0.90
35743063--35743098	18	2.0	18	88	0	54	69	8	11	11	1.37
35743262--35743304	21	2.2	19	83	8	50	25	18	32	23	1.97
35745863--35745910	16	3.2	16	68	31	52	68	0	0	31	0.90
35745861--35746740	52	16.9	52	99	0	1751	67	1	0	31	1.01
35747407--35747518	58	1.9	58	90	0	179	24	28	18	28	1.98
35747782--35747832	26	2.0	26	96	0	93	41	19	17	21	1.91
35747781--35747857	26	3.0	26	84	3	84	37	22	20	19	1.94
35757080--35757135	28	2.0	28	96	0	103	26	32	3	37	1.74
35757354--35757473	58	2.1	58	96	0	222	39	30	10	20	1.85
35761115--35761196	27	3.0	27	80	8	94	34	20	24	20	1.97
35768414--35768767	98	3.6	98	98	0	665	34	18	25	21	1.96
35775951--35776048	46	2.2	46	92	1	162	25	25	15	33	1.95
35787209--35787300	6	15.3	6	76	8	89	16	5	1	77	1.01
35787207--35787300	38	2.4	38	84	10	118	17	5	1	76	1.02
35794331--35794403	31	2.4	31	88	0	110	26	24	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35794608--35794692	26	3.4	25	85	9	93	28	22	21	28	1.99
35794621--35794716	26	3.8	26	88	2	126	27	22	23	26	2.00
35794829--35794876	25	1.9	25	86	0	69	29	16	22	31	1.96
35809591--35809622	14	2.4	13	90	10	55	62	12	6	18	1.50
35813762--35813806	22	2.1	21	84	12	56	20	4	4	71	1.21
35826618--35826644	13	2.1	13	100	0	54	14	25	37	22	1.93
35846411--35846550	70	2.0	70	100	0	280	28	12	32	25	1.93
35847435--35847532	49	2.0	49	97	0	187	31	22	10	35	1.88
35850268--35850453	93	2.0	93	92	0	309	38	13	14	33	1.85
35850652--35850955	152	2.0	152	100	0	608	29	21	11	37	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235