genome.fa.s4.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  95  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32870520--32872344	610	3.0	610	99	0	3605	31	16	24	28	1.96
32872098--32872222	46	2.7	45	85	6	144	28	19	27	24	1.98
32877404--32877442	21	1.9	20	94	5	69	46	23	0	30	1.53
32883709--32883856	42	3.5	42	75	8	122	27	19	25	28	1.99
32888086--32888351	40	6.7	40	83	6	270	26	27	21	25	1.99
32888086--32888298	81	2.7	79	84	2	257	26	27	21	24	1.99
32888088--32888344	121	2.1	120	80	5	270	26	26	20	26	1.99
32888086--32888351	81	3.3	81	80	7	215	26	27	21	25	1.99
32888283--32888360	40	1.9	41	82	10	97	26	28	20	24	1.99
32889884--32889973	45	2.0	45	95	0	162	27	34	10	27	1.89
32890229--32890473	122	2.0	123	88	4	370	28	25	15	30	1.96
32899151--32899335	40	4.7	40	82	7	200	24	23	27	24	2.00
32899151--32899335	79	2.3	81	82	7	218	24	23	27	24	2.00
32899204--32899368	79	2.1	79	83	6	201	26	21	27	24	1.99
32911709--32912329	85	6.9	88	70	16	326	28	20	19	32	1.97
32911859--32912246	44	8.7	43	71	14	218	27	20	19	32	1.97
32911900--32912329	181	2.4	181	90	0	655	28	20	18	32	1.96
32911893--32912329	45	9.7	43	70	15	253	28	20	18	32	1.96
32912024--32912335	96	3.4	95	72	13	308	29	19	17	33	1.95
32919157--32919188	16	1.9	17	93	6	57	59	0	31	9	1.29
32920626--32920669	19	2.3	19	84	7	54	36	2	4	56	1.32
32920632--32920671	19	2.0	20	90	4	64	40	0	5	55	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32923665--32923804	65	2.1	67	84	6	180	28	6	4	60	1.40
32924130--32924197	22	3.1	22	73	10	59	26	10	5	57	1.55
32936013--32936144	44	2.9	45	82	3	158	31	21	21	25	1.98
32936204--32936314	44	2.5	44	82	0	132	36	18	13	30	1.90
32937633--32937720	3	28.7	3	74	8	70	32	6	1	59	1.31
32937633--32937719	23	3.7	23	75	4	75	33	6	1	58	1.32
32942649--32942806	52	3.1	52	93	1	273	31	29	17	22	1.97
32943172--32943217	23	1.9	24	83	16	60	36	10	6	45	1.65
32953289--32953321	13	2.5	13	90	0	57	39	36	21	3	1.69
32961767--32961871	53	2.0	53	98	0	201	21	32	28	17	1.96
32982884--32982933	25	2.0	25	88	0	73	38	2	2	58	1.21
32988767--32988959	6	31.3	6	71	16	110	49	14	16	19	1.79
32988794--32988903	31	3.5	31	75	4	114	50	15	16	17	1.78
32988794--32988875	37	2.2	37	86	0	110	50	14	17	18	1.79
32988830--32988896	25	2.7	25	90	0	107	49	14	17	17	1.80
32988836--32988928	19	4.6	19	71	21	82	48	13	18	19	1.81
32988794--32988958	62	2.7	62	91	0	222	49	15	16	18	1.80
32988855--32988930	37	2.1	37	87	0	107	48	15	17	18	1.81
32988794--32988959	25	6.7	25	76	8	96	49	15	16	18	1.80
32989078--32989137	27	2.3	26	85	2	75	35	20	23	21	1.96
32989404--32989623	27	8.2	27	83	4	232	25	18	19	37	1.94
32989430--32989623	80	2.4	81	88	0	291	24	17	20	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32989427--32989623	107	1.8	108	90	1	315	24	17	19	38	1.93
32989716--32990812	54	20.3	54	90	0	1510	29	8	22	39	1.83
32989644--32990812	81	14.4	81	91	0	1613	30	8	22	39	1.83
32992033--32992083	10	5.1	10	95	0	75	33	0	5	60	1.21
32996550--32996589	7	5.7	7	87	0	62	20	50	0	30	1.49
32996550--32996596	21	2.2	21	92	0	76	21	46	0	31	1.51
32998190--32998365	50	3.7	46	81	8	176	28	21	29	21	1.98
32998185--32998365	46	3.8	48	83	7	217	28	20	29	20	1.98
32999882--33000603	361	2.0	360	95	0	1293	30	16	17	36	1.92
33000814--33000872	30	2.0	30	82	0	73	32	5	23	38	1.77
33001216--33001351	48	2.8	48	87	0	173	24	22	27	26	2.00
33003158--33003324	84	2.0	84	97	0	316	45	1	22	31	1.60
33003462--33003702	121	2.0	121	99	0	473	34	10	18	36	1.86
33004562--33004713	27	5.6	27	91	3	223	27	12	29	30	1.93
33004562--33004713	55	2.8	55	91	0	232	27	12	29	30	1.93
33012290--33012515	113	2.0	113	99	0	443	30	8	20	40	1.82
33012946--33013123	27	6.6	26	82	6	178	26	15	28	28	1.96
33012946--33013123	54	3.3	54	81	8	200	26	15	28	28	1.96
33012947--33013102	82	1.9	81	85	6	217	26	16	28	28	1.97
33012943--33013123	82	2.2	81	81	4	213	27	16	28	28	1.97
33013028--33013134	27	3.9	27	85	1	70	26	14	28	29	1.95
33014643--33014787	51	2.8	51	84	8	204	22	15	29	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33014988--33015060	37	1.9	37	88	2	110	43	1	23	31	1.62
33018349--33018591	50	4.9	50	86	1	276	23	27	20	28	1.99
33038349--33038415	25	2.7	25	71	13	66	19	20	25	34	1.96
33038349--33038462	50	2.3	51	83	3	133	24	19	21	34	1.96
33050939--33051025	44	2.0	44	97	2	167	60	2	9	27	1.39
33055313--33055343	3	10.3	3	100	0	62	67	0	0	32	0.91
33056427--33056462	18	2.0	18	100	0	72	22	11	27	38	1.88
33070380--33070451	36	2.0	36	100	0	144	36	5	16	41	1.72
33071679--33071820	50	2.8	50	93	0	230	21	33	22	22	1.98
33076235--33076288	24	2.2	24	96	0	99	24	27	12	35	1.92
33080984--33081021	19	2.0	19	94	0	67	73	7	0	18	1.06
33083678--33083747	27	2.6	26	95	2	95	31	28	12	27	1.93
33083678--33083775	28	3.5	28	90	2	135	31	28	13	26	1.94
33084845--33084992	77	2.0	71	88	7	215	23	19	16	40	1.91
33092098--33092320	39	5.7	40	86	7	273	25	22	27	24	2.00
33092098--33092320	79	2.8	81	85	8	282	25	22	27	24	2.00
33092098--33092353	79	3.3	79	82	9	224	26	21	27	24	1.99
33096881--33096990	42	2.6	42	81	7	116	22	20	29	28	1.98
33096873--33097031	85	1.9	85	80	5	187	23	20	27	28	1.99
33100474--33100530	26	2.2	26	83	3	69	26	19	19	35	1.95
33111149--33111320	79	2.2	79	82	3	211	25	21	27	25	1.99
33111149--33111318	40	4.3	39	85	5	198	25	21	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33111188--33111339	79	1.9	80	79	4	173	25	21	27	25	1.99
33116855--33116968	50	2.4	47	80	5	131	27	22	14	35	1.94
33119911--33119962	27	2.0	26	84	3	68	34	17	23	25	1.96
33122930--33123775	65	13.0	65	99	0	1683	43	18	13	24	1.87
33123778--33123834	26	2.2	26	80	3	60	26	17	19	36	1.94
33125087--33125116	13	2.2	14	94	5	53	76	0	16	6	0.99
33126270--33126328	31	1.9	31	100	0	118	30	10	23	35	1.88
33128646--33129009	50	7.2	50	79	4	365	30	26	17	24	1.97
33128640--33129009	151	2.5	151	90	0	587	30	26	17	24	1.97
33128649--33129009	101	3.6	100	78	2	373	31	26	18	24	1.97
33128638--33129059	151	2.8	150	76	10	423	31	26	17	24	1.97
33132177--33132264	30	2.9	30	80	9	99	27	17	26	29	1.97
33134486--33134541	12	4.4	12	80	8	58	16	21	0	62	1.32
33134533--33134599	30	2.2	30	84	5	82	11	22	1	64	1.35
33134550--33134605	18	3.1	18	76	5	51	7	19	3	69	1.27
33134575--33134599	12	2.1	12	100	0	50	8	16	0	76	1.02
33138968--33139049	39	2.1	39	95	0	146	21	32	25	19	1.97
33141329--33141506	40	4.5	39	88	3	207	24	28	24	22	1.99
33169712--33169753	20	2.1	20	82	8	50	45	7	9	38	1.64
33176064--33176107	20	2.2	20	88	4	72	45	15	11	27	1.81
33176953--33176982	15	2.1	15	93	6	53	30	6	26	36	1.82
33178256--33178285	15	1.9	16	93	6	53	26	3	30	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33178881--33179045	43	3.9	42	81	7	156	26	21	29	23	1.99
33181586--33181618	13	2.6	13	90	4	50	3	27	0	69	1.03
33181628--33181667	21	1.9	21	89	0	62	7	20	0	72	1.08
33181638--33181683	15	2.9	16	90	6	67	8	19	0	71	1.11
33181659--33181697	19	2.0	20	90	5	62	10	20	0	69	1.17
33181644--33181683	16	2.6	16	92	4	55	10	17	0	72	1.11
33181726--33181805	37	2.2	37	95	0	142	10	23	1	65	1.31
33184827--33184927	43	2.4	42	81	5	123	32	12	18	35	1.89
33187876--33188067	50	3.8	50	82	5	219	26	18	25	29	1.98
33187884--33188067	52	3.7	50	82	4	192	26	19	25	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235