genome.fa.s4.2.7.7.80.10.50.1000.198.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  198  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67578488--67578643	82	1.9	81	81	6	190	25	16	28	30	1.96
67583136--67583255	60	2.0	60	98	0	231	29	19	23	28	1.98
67583707--67583831	61	2.0	61	98	0	241	30	19	24	26	1.98
67584143--67584275	66	2.0	66	98	0	257	29	21	26	23	1.99
67586711--67586860	55	2.8	54	80	4	149	26	15	29	28	1.96
67586683--67586860	27	6.6	27	77	6	146	25	15	28	30	1.96
67586684--67586839	82	1.9	81	81	6	190	25	16	28	30	1.96
67586951--67586999	24	2.0	24	100	0	98	24	16	30	28	1.96
67591112--67591256	73	2.0	73	91	0	236	22	17	26	33	1.96
67591137--67591242	36	2.9	38	64	16	87	25	18	22	33	1.97
67594823--67594972	55	2.8	54	80	4	149	26	15	29	28	1.96
67594795--67594972	27	6.6	27	77	6	146	25	15	28	30	1.96
67594796--67594951	82	1.9	81	81	6	190	25	16	28	30	1.96
67602829--67602978	55	2.8	54	80	4	149	26	15	29	28	1.96
67602801--67602978	27	6.6	27	77	6	146	25	15	28	30	1.96
67602802--67602957	82	1.9	81	81	6	190	25	16	28	30	1.96
67604923--67604979	24	2.4	24	100	0	114	33	0	36	29	1.58
67604923--67604990	24	2.8	24	93	4	102	35	1	35	27	1.66
67606408--67606518	27	4.1	27	81	7	127	15	23	23	37	1.93
67606408--67606518	54	2.1	54	87	3	161	15	23	23	37	1.93
67608337--67608752	207	2.0	207	95	0	751	35	20	17	26	1.95
67609837--67610003	7	23.4	7	72	10	88	46	29	0	23	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67609837--67610003	21	7.8	21	73	9	104	46	29	0	23	1.57
67610708--67610875	40	4.2	40	83	4	106	25	27	23	23	2.00
67610731--67610875	40	3.6	40	85	4	193	23	26	24	25	2.00
67612064--67612139	38	2.0	38	97	0	143	31	22	13	32	1.92
67618228--67618573	47	7.3	47	94	0	575	31	8	30	29	1.86
67620635--67620708	29	2.6	29	84	4	96	27	16	31	25	1.96
67621096--67621412	40	7.9	40	89	0	436	24	22	27	25	2.00
67621017--67621412	80	4.9	80	86	2	449	25	22	27	25	2.00
67628356--67628447	39	2.3	39	88	5	132	25	28	22	23	2.00
67628337--67628500	40	4.1	40	80	10	176	24	27	23	25	2.00
67630529--67630838	120	2.6	119	82	0	359	28	20	20	30	1.98
67630524--67630838	40	7.9	40	80	1	292	27	21	20	30	1.98
67637281--67637314	17	2.0	17	94	0	59	52	5	2	38	1.41
67637339--67637650	9	35.8	9	69	20	107	45	14	2	36	1.60
67637347--67637661	16	19.8	16	68	16	129	45	14	3	36	1.62
67637334--67637661	30	10.2	34	66	22	131	45	15	3	36	1.62
67637334--67637489	64	2.5	64	89	2	235	44	15	2	37	1.60
67637415--67637634	46	4.6	46	84	6	296	45	14	3	36	1.62
67637415--67637635	97	2.3	97	87	3	326	46	14	3	36	1.62
67637556--67637669	25	4.3	26	72	16	83	45	17	2	34	1.62
67639384--67639409	12	2.2	12	100	0	52	34	7	26	30	1.85
67643153--67643214	21	3.0	21	90	0	97	29	22	48	0	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67643164--67643204	18	2.3	19	79	12	50	29	21	48	0	1.50
67643584--67643716	43	3.1	43	85	2	178	30	30	18	21	1.97
67645460--67645524	28	2.3	28	94	0	112	32	27	9	30	1.88
67645630--67645719	27	3.2	27	79	7	101	20	24	23	32	1.98
67645640--67645730	27	3.2	28	78	4	76	21	26	19	31	1.98
67646797--67646830	10	3.3	10	84	8	50	29	8	8	52	1.62
67653341--67653405	28	2.3	28	94	0	112	32	27	9	30	1.88
67653511--67653600	28	3.2	26	78	10	90	18	23	24	33	1.97
67653511--67653625	55	2.1	56	80	8	128	18	23	22	35	1.95
67656880--67657036	43	3.7	43	73	10	149	29	23	15	31	1.95
67662289--67662322	17	2.1	17	88	5	52	44	0	11	44	1.40
67664505--67664601	25	3.9	24	78	13	90	26	21	21	29	1.99
67664797--67664879	30	2.7	31	90	3	134	31	20	26	21	1.98
67664797--67664874	31	2.6	30	93	2	129	30	21	26	20	1.98
67672395--67672465	25	2.8	25	86	2	88	26	23	19	29	1.98
67672394--67672478	25	3.4	25	78	13	70	29	22	20	28	1.98
67685053--67685178	63	2.0	63	93	0	216	37	7	20	34	1.80
67694234--67694373	33	4.3	32	68	17	101	25	19	27	27	1.99
67694195--67694388	96	2.0	96	92	2	327	22	21	26	29	1.99
67694676--67694838	77	2.1	77	91	1	263	30	14	13	41	1.84
67710965--67711023	27	2.2	27	90	0	100	23	22	20	33	1.97
67710974--67711032	27	2.2	27	84	0	73	23	23	18	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67711840--67711868	14	2.1	14	100	0	58	72	0	0	27	0.85
67711838--67711888	6	8.3	6	77	10	50	76	1	0	21	0.88
67715056--67715109	26	2.1	26	92	0	90	7	42	5	44	1.55
67715061--67715122	26	2.4	26	80	0	70	4	45	8	41	1.55
67725009--67725159	43	3.5	42	79	6	144	31	19	15	32	1.94
67726361--67726526	43	3.9	43	84	2	201	27	13	24	33	1.94
67729674--67729705	16	2.0	16	100	0	64	12	6	50	31	1.65
67730876--67730962	43	2.0	43	86	0	120	31	9	25	34	1.87
67732290--67732683	27	14.6	27	84	3	341	20	17	21	41	1.90
67733794--67733824	12	2.6	12	94	0	53	19	41	0	38	1.51
67737017--67737185	43	4.0	43	75	6	164	28	15	23	32	1.95
67747435--67747585	43	3.5	43	80	6	180	33	25	12	28	1.92
67747708--67747774	35	1.9	35	81	0	80	50	13	2	32	1.56
67753860--67753917	29	1.9	31	83	13	77	41	5	25	27	1.76
67763738--67763777	20	2.0	20	85	9	55	52	0	27	20	1.46
67763745--67763779	16	2.2	16	90	5	54	54	0	25	20	1.45
67783570--67783652	28	3.0	28	82	7	98	33	27	10	27	1.90
67783640--67783773	40	3.3	40	81	0	142	29	22	20	27	1.98
67792357--67792432	34	2.2	34	90	0	116	26	26	26	21	1.99
67808461--67808485	10	2.5	10	100	0	50	0	32	0	68	0.90
67809764--67809843	34	2.4	33	91	2	124	27	25	25	22	2.00
67810870--67810951	41	2.0	41	95	0	146	36	20	19	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67815272--67815309	17	2.2	17	90	4	58	18	23	36	21	1.95
67815736--67815801	28	2.4	27	75	12	73	15	19	24	40	1.90
67815842--67815898	21	2.7	21	94	0	96	5	5	49	40	1.48
67815927--67815992	28	2.4	28	86	0	87	24	22	25	27	2.00
67817299--67817328	15	2.1	14	93	6	51	46	43	0	10	1.37
67818282--67818319	19	2.0	19	89	0	58	13	2	50	34	1.55
67827812--67827843	14	2.3	14	94	0	55	28	31	9	31	1.88
67828489--67828523	17	2.1	17	100	0	70	40	20	5	34	1.76
67829175--67829216	21	2.1	21	87	12	63	45	2	4	47	1.36
67829996--67830042	21	2.1	24	84	11	64	63	4	2	29	1.25
67836285--67836427	75	1.9	75	88	8	220	46	6	12	34	1.69
67836407--67836635	116	2.0	116	92	0	386	40	8	5	45	1.58
67836632--67836990	71	5.1	71	67	17	282	39	7	5	47	1.55
67836600--67837088	69	7.0	70	65	18	286	41	6	5	46	1.54
67836511--67837088	140	4.1	140	96	0	1036	40	7	5	46	1.55
67839813--67839990	27	6.6	27	84	3	205	29	28	15	26	1.96
67839834--67839989	82	1.9	81	88	3	233	29	28	15	26	1.96
67840585--67840667	42	2.0	42	92	0	139	28	20	8	42	1.81
67841456--67841651	98	2.0	99	98	1	385	20	20	16	42	1.89
67843026--67843161	50	2.7	50	77	8	134	27	21	28	22	1.99
67845906--67845938	17	2.0	17	88	5	50	33	6	15	45	1.70
67845255--67846846	574	2.8	569	81	8	1749	39	13	8	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67848068--67848226	41	3.9	40	82	4	194	23	19	25	31	1.98
67848332--67848360	15	1.9	15	100	0	58	0	41	0	58	0.98
67852646--67852853	44	4.8	44	76	7	203	23	16	28	31	1.96
67852626--67852853	86	2.6	85	79	5	251	21	16	29	32	1.95
67852918--67852958	21	2.0	21	90	0	64	39	26	21	12	1.89
67853342--67853382	6	6.8	6	97	0	64	34	56	0	9	1.32
67853342--67853390	6	8.2	6	95	0	53	32	57	0	10	1.32
67855085--67855133	23	2.1	23	96	0	89	38	2	22	36	1.66
67855242--67855283	20	2.2	20	86	4	59	66	4	0	28	1.12
67855343--67855370	13	2.2	13	100	0	56	35	17	0	46	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235