genome.fa.s4.2.7.7.80.10.50.1000.209.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  209  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71215033--71215078	23	2.0	23	91	0	74	34	30	13	21	1.91
71214988--71215106	63	1.9	63	94	0	211	26	27	18	27	1.98
71235979--71236161	40	4.6	40	85	5	237	23	20	28	26	1.99
71235974--71236194	40	5.6	39	80	6	214	25	20	27	25	1.99
71235973--71236194	119	1.9	119	83	7	290	25	20	27	25	1.99
71243971--71244158	40	4.7	40	84	3	245	26	21	27	25	1.99
71243971--71244191	40	5.6	39	81	6	223	27	21	26	24	1.99
71243970--71244191	119	1.9	119	84	7	299	27	21	27	24	1.99
71251315--71251499	40	4.7	40	81	5	178	27	28	20	24	1.99
71251282--71251499	40	5.5	39	77	7	165	25	27	20	25	1.99
71254815--71254846	12	2.6	13	85	14	50	53	12	0	34	1.39
71255927--71255969	20	2.3	18	84	8	50	18	32	34	13	1.90
71259477--71259604	46	2.8	46	85	4	152	35	17	21	26	1.95
71259481--71259604	23	5.4	22	76	12	108	33	17	21	26	1.96
71261934--71262125	40	4.6	42	76	11	153	34	25	14	25	1.94
71261946--71262066	40	3.0	39	87	7	161	37	24	13	24	1.91
71265846--71266033	49	3.8	49	82	2	241	27	19	25	28	1.99
71265841--71266028	100	1.9	100	95	0	340	26	20	25	28	1.99
71271219--71271369	27	5.6	26	81	4	131	26	16	26	30	1.97
71271218--71271395	54	3.3	54	82	6	164	26	15	26	30	1.96
71271219--71271369	82	1.9	81	83	6	198	26	16	26	30	1.97
71271246--71271395	27	5.5	27	81	3	113	27	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71271218--71271395	82	2.2	81	79	5	189	26	15	26	30	1.96
71279249--71279427	27	6.6	27	79	8	166	26	14	29	30	1.95
71279246--71279427	82	2.2	81	83	3	240	26	14	28	30	1.95
71289144--71289222	28	2.9	27	77	3	104	39	13	8	37	1.77
71290874--71290898	10	2.5	10	100	0	50	36	0	12	52	1.39
71309092--71309239	48	3.0	48	86	7	226	36	6	25	31	1.82
71309088--71309236	50	3.0	50	88	5	232	36	6	24	31	1.82
71309092--71309260	48	3.4	50	79	14	199	33	7	27	31	1.84
71309386--71309494	37	2.9	37	95	0	191	22	19	31	26	1.98
71320076--71320129	26	2.1	26	96	3	101	59	0	11	29	1.32
71321506--71321538	17	2.0	17	88	5	50	6	0	39	54	1.25
71324003--71324091	44	2.0	43	93	2	151	41	14	19	24	1.89
71325409--71325490	43	1.9	42	82	7	103	25	14	24	35	1.94
71327749--71327816	24	2.8	26	81	18	85	35	14	23	26	1.94
71336960--71337007	15	3.2	15	96	0	87	18	14	35	31	1.91
71341914--71342043	47	2.8	47	86	2	172	22	16	26	34	1.95
71344486--71344705	40	5.6	40	82	4	241	25	25	23	25	2.00
71348861--71349016	43	3.7	42	83	6	192	24	18	26	30	1.98
71351550--71351692	40	3.6	40	78	3	144	30	19	20	28	1.97
71351737--71351838	40	2.5	39	84	6	123	26	25	23	24	2.00
71351953--71352009	30	1.9	30	85	7	80	70	0	0	29	0.88
71352125--71352256	14	9.2	14	72	11	61	25	0	29	44	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71352208--71352284	21	3.6	22	77	6	79	24	1	40	33	1.64
71352174--71352294	7	16.9	7	69	14	59	23	0	38	37	1.61
71352175--71352283	14	7.6	15	78	7	84	23	0	37	37	1.62
71352232--71352290	14	4.1	14	84	4	73	23	1	42	32	1.64
71352240--71352281	22	1.9	22	90	0	66	23	2	47	26	1.64
71357970--71358116	43	3.5	42	82	3	170	22	19	29	29	1.98
71357970--71358116	42	3.5	43	83	2	181	22	19	29	29	1.98
71372324--71372543	98	2.3	96	82	7	250	25	29	18	26	1.98
71372318--71372683	48	7.7	47	75	9	248	24	28	18	27	1.98
71372314--71372683	140	2.6	145	76	12	367	25	28	18	28	1.98
71381236--71381278	22	2.0	22	95	0	77	34	4	11	48	1.60
71384717--71384768	27	2.0	26	84	3	68	17	26	21	34	1.95
71384784--71384847	33	2.0	32	84	3	83	20	23	20	35	1.96
71392254--71392402	46	3.3	44	81	11	124	24	29	20	25	1.99
71392297--71392418	46	2.7	44	82	8	156	23	29	20	26	1.99
71395354--71395554	101	2.0	101	99	0	393	36	18	9	35	1.84
71400839--71400902	33	2.0	32	84	3	83	20	25	20	34	1.96
71400864--71400923	27	2.3	26	85	2	75	21	23	20	35	1.96
71402172--71402310	44	3.1	44	69	17	133	25	22	20	32	1.98
71402163--71402469	89	3.4	89	87	3	406	25	24	18	31	1.98
71402420--71402628	88	2.4	87	87	2	294	32	22	18	26	1.97
71417612--71417869	130	2.0	130	89	0	399	35	18	18	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71429517--71429595	37	2.1	37	85	0	104	24	30	20	25	1.98
71429714--71430620	47	19.3	47	97	0	1643	26	29	11	32	1.92
71432136--71432356	109	2.0	109	100	0	442	24	27	18	29	1.98
71433514--71433828	40	7.9	40	77	7	209	26	27	21	24	2.00
71433541--71433828	80	3.6	79	79	5	269	26	26	22	24	2.00
71433651--71433828	79	2.2	81	83	7	222	25	26	22	25	2.00
71442442--71442578	54	2.5	54	100	0	274	24	16	26	32	1.96
71446463--71446627	47	3.5	47	74	14	187	20	20	28	30	1.98
71446512--71446681	46	3.7	46	75	13	195	19	21	29	30	1.97
71446460--71446673	93	2.3	93	99	0	419	20	21	28	28	1.98
71453252--71453281	2	15.0	2	100	0	60	0	0	50	50	1.00
71455550--71455657	30	3.5	30	74	11	94	37	10	4	47	1.58
71459047--71459154	42	2.6	42	83	5	137	16	25	15	42	1.88
71462720--71462797	5	15.4	5	75	15	54	16	3	1	78	0.97
71462736--71462813	25	3.3	26	81	12	89	17	5	1	75	1.05
71462721--71462804	29	2.8	29	80	5	96	17	3	1	77	0.98
71464693--71464742	10	5.0	10	78	9	57	22	6	4	68	1.29
71474034--71474085	21	2.5	21	93	0	86	26	1	1	69	1.10
71474021--71474096	7	11.0	7	72	19	54	26	2	1	69	1.09
71475738--71475797	10	6.0	10	88	11	88	20	8	1	70	1.22
71475739--71475797	16	3.9	15	75	20	52	18	8	1	71	1.20
71477316--71477354	12	3.6	12	74	25	50	41	0	17	41	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71477305--71477354	20	2.5	20	100	0	100	42	0	18	40	1.50
71479512--71479688	47	3.8	47	79	13	204	29	27	20	22	1.98
71479520--71479690	94	1.8	93	91	3	281	29	27	21	22	1.99
71480110--71480169	30	2.0	30	87	6	86	28	26	8	36	1.85
71484152--71484273	43	2.8	43	74	7	122	25	18	24	31	1.97
71491405--71491476	36	2.0	35	97	2	135	43	16	16	22	1.87
71500829--71500861	16	2.1	17	88	11	52	36	6	0	57	1.23
71508737--71508779	23	1.9	23	90	4	70	9	6	2	81	0.95
71508890--71508950	21	3.0	21	77	20	74	39	0	1	59	1.08
71508890--71508959	21	3.3	21	75	23	67	42	0	1	55	1.08
71508897--71509135	100	2.4	96	80	14	261	38	2	4	53	1.35
71509146--71509177	15	2.1	15	100	0	64	31	0	0	68	0.90
71508963--71509171	100	2.1	96	81	14	271	36	2	4	55	1.36
71509150--71509184	15	2.3	15	90	0	52	40	0	2	57	1.14
71509220--71509254	8	4.5	8	89	7	54	45	0	0	54	0.99
71509207--71509254	15	3.3	15	81	16	57	47	0	0	52	1.00
71512552--71512654	30	3.4	30	87	0	134	27	22	26	24	2.00
71515452--71515493	18	2.4	18	84	7	61	38	4	0	57	1.20
71515607--71515653	17	2.6	18	83	10	60	59	0	2	38	1.09
71515714--71515780	21	3.3	21	71	23	54	55	0	0	44	0.99
71515726--71515785	19	3.1	19	78	19	70	60	1	0	38	1.07
71515726--71515778	19	2.7	20	85	14	74	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71515761--71515870	46	2.4	45	80	9	123	54	4	0	40	1.27
71524299--71524421	56	2.2	58	89	5	189	49	4	16	30	1.64
71531482--71531527	3	15.3	3	100	0	92	67	0	0	32	0.91
71542628--71542674	24	1.9	25	95	4	87	0	23	0	76	0.78
71542628--71542673	12	3.8	12	80	11	58	0	21	0	78	0.76
71544447--71544535	44	2.0	44	82	8	110	37	24	17	20	1.94
71547053--71547125	37	2.0	37	91	0	119	27	31	17	23	1.97
71547274--71547417	50	2.9	48	86	8	191	29	25	8	36	1.85
71547274--71547464	100	1.9	96	85	7	258	28	25	9	36	1.87
71547428--71547499	22	3.1	22	64	24	58	23	29	13	33	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235