genome.fa.s4.2.7.7.80.10.50.1000.213.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  213  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72343120--72343234	44	2.6	44	85	2	149	35	13	22	27	1.92
72343120--72343253	46	3.0	45	82	4	153	35	14	23	26	1.93
72353970--72354895	206	4.5	206	90	0	1370	30	18	22	29	1.97
72353970--72354895	411	2.2	412	88	0	1370	30	18	22	29	1.97
72356698--72356905	11	18.4	11	64	25	55	33	4	1	60	1.27
72356699--72356905	13	15.1	13	65	25	56	33	4	1	60	1.27
72356701--72356997	24	12.4	24	64	25	64	31	5	2	60	1.31
72356701--72356859	16	9.9	16	68	22	68	32	3	2	62	1.24
72356625--72356745	62	2.0	62	79	15	135	29	5	2	61	1.32
72356693--72356797	41	2.7	40	81	16	116	31	3	0	63	1.18
72356815--72356870	28	2.0	28	82	6	69	37	3	3	55	1.35
72356767--72356908	13	10.7	13	64	26	59	33	4	2	59	1.28
72356879--72356958	21	3.9	20	76	14	67	30	5	1	63	1.23
72357209--72357267	17	3.6	16	74	21	59	33	3	0	62	1.12
72359233--72359277	15	2.8	16	86	10	65	35	0	0	64	0.94
72362621--72362660	21	1.9	21	94	0	71	35	12	20	32	1.90
72375923--72375954	5	6.6	5	92	7	57	81	0	0	18	0.70
72375924--72375954	9	3.3	9	95	4	53	80	0	0	19	0.71
72381434--72381547	56	2.0	56	87	0	165	35	5	16	42	1.71
72385903--72385982	41	2.0	41	84	0	106	28	16	23	31	1.96
72399248--72399309	27	2.3	27	77	5	63	40	22	19	17	1.91
72403409--72403435	12	2.2	12	100	0	54	18	40	33	7	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72412191--72412241	25	2.0	25	96	0	93	41	35	9	13	1.78
72413376--72413461	45	1.9	45	85	4	120	48	3	8	39	1.50
72415037--72415097	30	2.0	30	100	0	122	34	16	9	39	1.82
72432792--72432957	40	4.2	40	93	0	271	27	27	21	22	1.99
72438175--72438420	49	5.0	49	81	3	294	28	28	18	24	1.98
72438177--72438420	100	2.5	99	86	2	337	29	27	18	24	1.98
72442616--72442663	23	2.1	23	96	0	87	16	25	12	45	1.82
72443753--72443792	17	2.4	17	87	8	55	45	0	2	52	1.14
72443808--72443833	9	2.9	9	100	0	52	80	0	7	11	0.89
72443817--72443846	13	2.2	14	94	5	53	80	0	6	13	0.91
72444666--72444741	22	3.7	21	76	15	68	40	17	6	35	1.75
72444702--72444792	19	4.9	19	88	8	143	37	14	9	38	1.79
72444679--72444792	35	3.0	36	83	12	131	38	14	8	37	1.78
72444702--72444804	36	2.8	38	85	10	144	37	12	10	38	1.78
72444911--72444951	21	2.0	21	85	9	57	12	2	14	70	1.26
72445157--72445343	45	4.2	45	81	1	214	25	27	14	32	1.95
72445158--72445326	89	1.9	89	86	2	241	26	28	13	31	1.94
72445357--72445651	78	3.8	78	86	2	414	25	23	18	31	1.98
72455504--72455536	17	1.9	17	88	11	50	69	0	0	30	0.88
72455504--72455537	18	1.9	17	88	5	50	70	0	0	29	0.87
72455792--72455849	22	2.6	22	81	7	64	41	17	5	36	1.72
72455828--72455899	19	3.9	19	82	10	105	36	13	9	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72457613--72457769	39	4.0	39	92	2	210	30	29	22	17	1.96
72464103--72464303	39	5.1	38	92	3	267	29	30	22	16	1.96
72466288--72466328	19	2.2	19	90	0	64	39	9	0	51	1.35
72466723--72466748	6	4.3	6	100	0	52	84	0	0	15	0.62
72468972--72469008	19	1.9	19	88	0	56	10	2	13	72	1.21
72470550--72470839	145	2.0	145	97	0	544	35	15	18	31	1.92
72471198--72471232	18	2.0	18	88	5	54	68	0	0	31	0.90
72471486--72471561	22	3.7	21	76	15	68	40	17	6	35	1.75
72471515--72471612	35	2.7	37	87	12	150	35	16	10	37	1.82
72471522--72471612	19	4.9	19	92	8	161	36	15	10	37	1.83
72471731--72471770	21	2.0	20	85	5	53	10	2	15	72	1.21
72471963--72472236	45	6.1	45	74	6	232	25	27	15	32	1.96
72472176--72472602	77	5.5	77	92	2	644	23	23	19	34	1.97
72472785--72473549	78	9.8	78	73	11	530	25	23	18	32	1.97
72472785--72473549	156	4.9	155	72	15	658	25	23	18	32	1.97
72473155--72473191	18	2.1	18	100	0	74	27	29	0	43	1.55
72476892--72476921	15	2.0	15	100	0	60	33	26	6	33	1.83
72482146--72482203	22	2.6	22	81	7	64	41	17	5	36	1.72
72482175--72482233	17	3.4	17	76	17	66	35	15	10	38	1.81
72482182--72482235	17	2.9	19	83	10	85	37	12	11	38	1.79
72492388--72492456	30	2.3	31	80	14	83	8	14	17	59	1.60
72494847--72495022	46	3.8	45	81	10	212	21	21	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72494844--72495014	93	1.8	93	94	0	306	21	21	29	27	1.98
72502202--72502226	8	3.1	8	100	0	50	24	0	0	76	0.80
72504956--72505111	33	4.7	33	70	12	97	30	20	26	22	1.98
72505121--72505236	45	2.6	45	81	2	153	37	18	25	18	1.93
72505218--72505355	47	3.0	46	88	2	204	42	15	24	18	1.88
72505861--72505907	24	2.0	23	91	4	76	10	4	36	48	1.57
72509209--72509282	37	2.0	37	100	0	148	43	5	24	27	1.76
72512101--72512134	15	2.3	15	90	10	52	32	0	0	67	0.91
72512195--72512309	5	24.0	5	68	18	66	34	2	0	61	1.16
72512159--72512292	10	13.8	10	65	27	58	31	2	2	63	1.22
72512430--72512484	17	3.1	19	77	12	55	34	1	1	61	1.17
72512513--72512563	22	2.3	23	80	12	61	33	3	13	49	1.61
72516317--72516357	20	2.0	20	100	0	82	56	4	29	9	1.53
72524517--72524775	44	5.9	44	87	1	358	26	15	28	29	1.96
72524523--72524813	88	3.3	88	84	3	221	29	15	26	28	1.96
72524513--72524839	132	2.5	132	81	2	325	31	15	26	26	1.96
72524890--72525041	44	3.4	45	81	3	175	30	19	25	25	1.98
72525255--72525287	17	1.9	17	93	0	57	69	6	6	18	1.30
72526300--72526360	30	2.1	29	81	9	70	27	16	6	49	1.70
72526520--72526553	15	2.3	15	90	10	52	32	0	0	67	0.91
72526614--72526728	5	24.0	5	68	18	66	34	2	0	61	1.16
72526578--72526711	10	13.8	10	65	27	58	31	2	2	63	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72526849--72526901	17	3.1	17	81	13	56	33	0	1	64	1.05
72526837--72526889	27	2.0	27	85	7	72	28	1	1	67	1.11
72526851--72526905	9	6.0	10	71	25	50	36	0	1	61	1.06
72526930--72526980	22	2.3	23	80	12	61	33	3	13	49	1.61
72532989--72533035	21	2.2	21	77	7	51	46	8	8	36	1.65
72535921--72535953	17	1.9	17	100	0	66	78	3	0	18	0.87
72539828--72539874	24	2.0	24	91	0	76	51	23	2	23	1.59
72539830--72539880	8	6.4	8	75	8	50	50	25	1	21	1.59
72541335--72541379	18	2.5	18	96	0	81	62	33	0	4	1.15
72551173--72551423	138	1.8	138	86	5	357	30	17	25	27	1.97
72551456--72551790	77	4.1	77	72	18	234	29	20	19	31	1.97
72551456--72551620	75	2.1	76	86	7	226	30	20	20	29	1.97
72551307--72551951	168	3.8	168	90	3	856	29	19	20	31	1.97
72551704--72551892	91	2.1	92	84	2	256	25	20	17	36	1.94
72551815--72552165	76	4.4	77	73	16	254	30	16	19	33	1.94
72552058--72552198	75	1.9	74	88	2	212	28	18	21	31	1.97
72552277--72552309	14	2.4	14	94	0	57	18	12	6	63	1.48
72552112--72552658	181	3.0	179	79	9	517	26	16	18	38	1.92
72552112--72552658	87	6.0	88	80	10	454	26	16	18	38	1.92
72552112--72552621	92	5.6	91	82	9	401	27	16	18	37	1.92
72553338--72553398	25	2.5	24	92	5	97	70	21	3	4	1.21
72553335--72553399	23	2.8	23	88	9	96	70	21	3	4	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72556920--72557004	15	5.7	15	76	5	82	56	16	14	12	1.67
72560334--72560363	9	3.3	9	100	0	60	20	0	0	80	0.72
72561312--72561512	71	2.8	71	70	7	172	34	6	12	45	1.69
72561321--72561535	72	3.0	71	70	8	193	34	8	12	45	1.72
72561437--72561631	99	2.0	99	87	0	282	36	9	11	42	1.74
72561536--72561769	72	3.2	72	81	2	220	34	8	13	43	1.74
72570805--72570847	22	2.0	22	100	0	86	32	9	11	46	1.72
72573204--72573483	10	28.8	10	66	17	76	62	3	1	32	1.23
72573247--72573319	26	2.8	28	83	10	100	64	0	2	32	1.08
72573247--72573340	26	3.4	27	77	14	86	64	1	2	31	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235