genome.fa.s4.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  146  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49102674--49102992	48	6.6	48	79	5	297	22	28	20	29	1.98
49102674--49103005	144	2.3	143	83	4	391	23	28	19	28	1.98
49105068--49105097	12	2.5	12	94	0	51	46	26	10	16	1.78
49107332--49107594	40	6.6	40	87	3	309	26	28	20	23	1.99
49121393--49121449	30	1.9	29	86	10	80	40	3	15	40	1.65
49123178--49123266	44	2.0	44	84	0	115	14	30	13	41	1.84
49125626--49125957	144	2.3	142	81	6	373	23	28	19	28	1.99
49125626--49125946	48	6.7	48	78	5	285	22	28	20	28	1.98
49128921--49128958	17	2.2	17	95	0	67	26	10	7	55	1.61
49132150--49132199	16	2.8	19	74	20	54	64	2	0	34	1.05
49132149--49132202	27	2.0	28	85	3	74	64	1	0	33	1.04
49138161--49138214	27	2.0	27	85	0	72	40	7	12	38	1.72
49138468--49138642	49	3.5	49	84	3	251	25	18	26	29	1.98
49138463--49138655	100	1.9	100	95	0	350	25	19	26	28	1.99
49145829--49145871	16	2.6	17	81	3	52	72	2	0	25	0.97
49146109--49146137	7	4.1	7	100	0	58	72	0	0	27	0.85
49146734--49146781	22	2.2	21	81	3	60	58	20	16	4	1.55
49147804--49147857	18	2.9	19	76	13	58	31	1	1	64	1.14
49154925--49155212	129	2.2	130	85	3	391	30	19	22	27	1.98
49155101--49155386	86	3.4	86	74	10	291	27	21	23	27	1.99
49155186--49155296	38	2.8	38	85	10	125	27	22	24	26	2.00
49155018--49155425	168	2.4	172	83	7	490	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49155224--49155606	130	2.9	129	90	1	588	27	21	24	25	1.99
49155018--49155597	44	13.5	43	70	9	301	28	20	23	26	1.99
49155611--49156251	88	7.4	88	86	3	800	29	23	18	28	1.98
49155676--49155900	44	5.1	44	67	5	150	27	23	20	28	1.99
49155611--49156242	263	2.4	264	86	5	854	29	23	18	28	1.98
49156186--49156439	44	5.8	44	75	5	237	29	19	23	27	1.98
49156186--49156437	88	2.9	88	83	0	326	29	19	23	27	1.98
49156505--49156623	51	2.3	51	98	0	229	36	20	18	24	1.94
49159137--49159312	46	3.8	46	79	12	216	20	21	29	28	1.98
49159134--49159305	93	1.8	93	96	0	317	20	21	29	27	1.98
49160991--49161044	18	2.9	19	76	13	58	31	1	1	64	1.14
49161252--49161309	20	2.8	20	82	17	66	22	5	0	72	1.04
49161442--49161475	15	2.3	15	89	0	50	20	2	0	76	0.92
49161879--49162192	80	3.9	80	98	0	601	35	18	12	33	1.89
49169441--49169518	33	2.4	33	86	4	104	24	10	44	20	1.82
49171587--49171623	17	2.3	17	90	9	60	59	8	0	32	1.27
49171600--49172116	104	5.0	103	87	5	617	58	12	1	27	1.43
49173133--49173161	13	2.1	14	93	6	51	41	0	20	37	1.53
49173953--49174046	49	1.9	49	86	0	134	25	19	22	32	1.97
49177216--49177332	42	2.7	43	78	9	139	26	16	28	29	1.97
49177619--49177717	38	2.6	37	84	6	117	22	19	26	32	1.97
49177728--49177840	45	2.5	45	86	2	165	22	23	30	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49178837--49179028	96	2.0	95	93	1	330	31	7	22	38	1.82
49179490--49179517	12	2.3	12	100	0	56	25	42	25	7	1.80
49181906--49182156	40	6.3	40	79	7	269	23	19	27	29	1.98
49181906--49182156	80	3.2	80	84	1	299	23	19	27	29	1.98
49181909--49182134	120	1.9	120	85	7	316	23	19	27	28	1.99
49183485--49183526	18	2.4	18	96	4	77	28	16	19	35	1.93
49185500--49185648	40	3.7	40	88	5	169	25	20	26	27	1.99
49196016--49196098	40	2.1	40	88	0	121	28	16	21	32	1.96
49196072--49196283	40	5.3	41	86	4	254	24	17	28	29	1.97
49198652--49198693	20	2.2	18	84	16	50	14	28	35	21	1.92
49208010--49208100	43	2.1	42	82	6	103	31	26	16	25	1.96
49215016--49215048	15	2.2	15	94	0	57	18	12	12	57	1.64
49217790--49218018	49	4.6	50	82	5	268	25	17	27	29	1.98
49228385--49228616	47	5.0	45	73	15	152	28	18	29	23	1.97
49228384--49228606	94	2.4	93	84	6	270	27	18	30	23	1.97
49230991--49231400	47	8.7	47	72	13	242	26	18	30	24	1.98
49230991--49231154	46	3.5	46	82	6	206	27	17	31	23	1.97
49230991--49231205	46	4.6	46	77	13	190	26	19	30	23	1.98
49231224--49231301	24	3.2	24	62	7	57	26	14	34	24	1.93
49239191--49239220	16	1.9	15	93	6	51	33	23	0	43	1.54
49239425--49239713	50	5.7	50	79	3	285	31	25	17	25	1.97
49239473--49239662	101	1.9	101	92	0	317	29	24	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49249846--49250081	50	4.7	50	75	8	221	28	17	23	30	1.97
49250553--49250608	27	2.1	27	100	0	112	44	7	14	33	1.72
49253882--49254281	200	2.0	200	99	0	791	32	15	20	31	1.94
49255697--49255841	72	2.0	72	98	0	281	30	20	20	28	1.97
49256377--49256622	122	2.0	122	99	0	483	35	22	6	35	1.80
49256853--49257030	27	6.6	27	79	3	142	28	28	16	26	1.97
49256874--49257029	82	1.9	81	84	3	206	28	28	16	26	1.97
49256853--49257030	54	3.3	55	81	3	173	28	28	16	26	1.97
49268708--49268943	50	4.7	50	75	8	221	28	17	23	30	1.97
49269415--49269470	27	2.1	27	100	0	112	44	7	14	33	1.72
49270249--49270308	27	2.3	26	85	2	75	35	20	23	21	1.96
49277696--49277755	27	2.3	26	85	2	75	35	20	23	21	1.96
49280964--49280993	16	1.9	15	93	6	51	33	23	0	43	1.54
49281198--49281486	50	5.7	50	79	3	285	31	25	17	25	1.97
49281246--49281435	101	1.9	101	92	0	317	29	24	19	26	1.98
49286513--49286762	124	2.0	124	98	0	482	23	19	24	32	1.97
49302346--49302407	31	2.0	31	96	0	115	25	30	16	27	1.96
49307972--49308017	20	2.3	20	88	0	65	6	21	15	56	1.61
49320219--49320256	20	1.9	20	89	10	60	60	2	15	21	1.47
49321943--49322114	48	3.7	48	82	4	201	24	31	20	23	1.98
49326629--49326839	40	5.3	40	81	3	239	25	27	22	24	2.00
49334840--49335059	40	5.6	40	82	6	252	25	27	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49336588--49336775	40	4.7	40	93	0	313	21	27	19	31	1.97
49345304--49345571	40	6.7	40	96	0	491	22	27	20	30	1.98
49364614--49364838	40	5.6	40	79	2	227	25	23	26	24	2.00
49364614--49364874	80	3.3	79	79	5	222	26	22	26	24	2.00
49366568--49366604	19	1.9	19	94	0	65	51	10	10	27	1.70
49372645--49372720	21	3.5	21	65	16	55	23	13	25	38	1.91
49372649--49372736	45	2.0	45	95	0	158	23	12	25	38	1.90
49374804--49375121	158	2.0	158	96	0	582	31	8	16	43	1.77
49382982--49383019	17	2.3	17	86	4	51	7	28	5	57	1.49
49382977--49383019	16	2.6	16	81	3	50	9	27	6	55	1.57
49398321--49398359	21	1.9	20	89	5	60	30	2	23	43	1.67
49400709--49400816	43	2.5	43	77	4	112	23	17	27	31	1.97
49409605--49409777	46	3.7	46	77	10	181	23	18	28	29	1.98
49409598--49409769	93	1.8	93	91	0	281	22	19	29	29	1.98
49412678--49412745	15	4.5	15	83	5	75	16	17	11	54	1.71
49412668--49412747	30	2.7	30	79	11	92	15	17	13	53	1.73
49415675--49415738	32	2.0	32	96	0	119	28	26	20	25	1.99
49427702--49427852	28	5.4	28	89	1	205	25	12	27	33	1.92
49431417--49431447	16	1.9	16	93	0	53	35	22	0	41	1.54
49431414--49431453	20	2.0	20	85	0	53	37	22	0	40	1.54
49431686--49431893	55	3.9	54	79	11	214	23	25	16	35	1.95
49434318--49434495	27	6.6	27	84	3	205	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49434339--49434494	82	1.9	81	88	3	233	29	28	15	26	1.96
49442378--49442555	27	6.6	27	84	5	180	29	28	15	26	1.96
49442399--49442554	82	1.9	81	88	3	233	29	28	15	26	1.96
49445215--49445316	50	2.0	50	98	0	195	29	21	10	38	1.87
49445494--49445660	46	3.7	45	84	3	203	26	19	29	23	1.98
49445494--49445659	92	1.8	92	85	5	239	26	19	30	24	1.98
49456728--49456796	32	2.2	32	97	2	131	28	8	27	34	1.87
49461588--49461746	40	4.0	40	86	4	207	24	20	25	28	1.99
49467156--49467197	17	2.4	17	88	4	57	16	14	42	26	1.86
49467167--49467206	17	2.4	17	100	0	80	10	22	47	20	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235