genome.fa.s4.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  153  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51546678--51546885	27	7.8	27	77	7	192	28	10	21	39	1.86
51546273--51546745	81	5.9	79	86	4	538	25	19	18	36	1.94
51546651--51546885	80	2.9	79	80	8	260	28	12	20	38	1.88
51546649--51546885	53	4.4	53	78	4	217	29	12	20	38	1.89
51548856--51549128	12	22.2	12	71	15	184	49	15	15	19	1.80
51548856--51549128	19	14.8	18	70	15	184	49	15	15	19	1.80
51548894--51549128	31	7.6	31	95	1	400	48	16	16	19	1.81
51549250--51549348	27	3.7	26	77	9	74	38	17	23	21	1.93
51549921--51550349	27	15.9	27	84	2	477	26	19	16	37	1.92
51550343--51550546	27	7.7	26	70	8	101	31	9	19	39	1.83
51550343--51550570	26	8.6	25	71	13	120	31	9	19	39	1.84
51550343--51550567	79	2.8	79	81	7	217	32	9	19	38	1.84
51550379--51550570	79	2.4	79	84	7	246	31	10	19	38	1.86
51550476--51550577	53	1.9	53	80	7	118	31	10	18	39	1.85
51552558--51552689	40	3.3	40	91	0	192	21	17	25	34	1.95
51560001--51560117	40	2.9	40	76	7	121	25	16	22	35	1.94
51560190--51560244	16	3.4	16	82	5	67	34	5	27	32	1.80
51560492--51560524	17	1.9	17	100	0	66	63	0	0	36	0.95
51570501--51570539	21	1.9	20	84	5	51	17	28	38	15	1.91
51571774--51571942	93	1.8	93	84	7	236	23	27	20	28	1.99
51572097--51572126	14	2.1	14	100	0	60	43	6	0	50	1.28
51585862--51585907	24	1.9	24	86	8	67	54	0	36	8	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51587733--51587874	46	3.0	46	77	9	153	23	28	18	30	1.97
51587746--51587875	47	2.8	44	78	13	138	22	28	20	29	1.98
51588206--51588263	30	1.9	30	89	0	89	27	25	12	34	1.91
51595582--51595655	35	2.1	35	97	0	139	36	24	12	27	1.91
51604875--51605259	43	9.0	43	83	2	452	29	26	16	27	1.97
51604875--51605264	171	2.3	172	84	3	489	29	26	16	27	1.97
51606012--51606042	15	2.1	15	93	0	53	54	25	0	19	1.44
51607709--51607755	12	3.8	12	78	15	51	19	21	0	59	1.38
51607714--51607758	13	3.4	13	81	3	54	17	24	0	57	1.40
51609095--51609128	11	3.1	11	82	0	50	41	2	2	52	1.31
51612384--51612450	19	3.3	19	67	25	55	20	13	25	40	1.89
51617773--51617965	55	3.6	54	79	2	190	36	18	23	22	1.95
51619142--51619252	55	2.0	55	89	3	170	42	8	19	29	1.80
51621031--51621138	26	4.2	26	91	0	180	33	7	23	36	1.83
51622626--51622678	26	2.0	26	82	7	63	35	20	15	28	1.93
51627498--51627705	54	3.9	54	76	11	201	36	17	22	23	1.94
51627506--51627716	108	2.0	109	84	3	284	38	17	22	22	1.93
51628702--51628726	8	3.1	8	100	0	50	24	12	0	64	1.27
51632732--51632818	43	2.0	43	88	0	129	25	13	22	37	1.91
51642097--51642125	13	2.1	14	93	6	51	17	20	10	51	1.74
51649930--51650034	44	2.4	43	78	7	115	33	19	14	33	1.91
51650509--51650549	21	2.0	21	90	4	66	48	24	0	26	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51652795--51652834	19	2.1	19	90	9	64	50	10	10	30	1.69
51658376--51658425	13	3.9	12	82	12	64	16	22	2	60	1.46
51658368--51658418	26	2.0	26	88	7	77	15	19	3	60	1.50
51662094--51662217	47	2.7	46	85	7	162	29	21	26	22	1.99
51666335--51666373	21	1.9	20	84	5	51	43	15	17	23	1.87
51667987--51668030	23	1.9	24	86	9	65	11	13	11	63	1.52
51669350--51669706	177	2.0	177	91	2	583	38	11	14	35	1.82
51670506--51670549	20	2.2	20	96	4	81	34	0	22	43	1.54
51674760--51674800	22	1.9	21	85	5	55	53	2	2	41	1.27
51681337--51681394	4	14.0	4	81	18	66	72	1	0	25	0.94
51683101--51683160	28	2.1	28	90	0	93	30	15	18	36	1.91
51686838--51686888	26	2.0	26	84	7	68	35	11	5	47	1.65
51686824--51686890	13	5.2	13	73	7	55	37	10	4	47	1.58
51688779--51688846	30	2.3	30	89	0	100	17	25	14	42	1.87
51690171--51690339	51	3.3	51	86	3	198	23	24	15	36	1.94
51690937--51690977	20	2.0	20	100	0	82	24	39	4	31	1.76
51693186--51693357	49	3.5	49	82	3	188	29	20	25	23	1.99
51694371--51694450	40	2.0	41	85	9	110	20	22	42	15	1.88
51696694--51696723	11	2.6	12	89	10	53	33	0	0	66	0.92
51696759--51696875	62	1.9	59	89	5	180	41	3	3	51	1.35
51697894--51697933	22	1.9	22	85	10	57	35	12	20	32	1.90
51702279--51702397	40	3.0	40	82	0	148	33	25	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51713430--51713489	28	2.1	28	87	0	84	31	26	11	30	1.92
51713470--51713575	40	2.7	40	77	5	115	33	29	15	21	1.94
51714063--51714102	21	2.0	20	85	5	53	47	27	0	25	1.52
51716583--51716614	15	2.1	15	94	0	55	15	6	9	68	1.36
51724685--51724727	16	2.7	16	77	0	50	9	18	18	53	1.70
51732713--51732751	19	2.1	19	95	0	69	30	7	5	56	1.49
51735878--51735934	24	2.4	24	75	0	60	59	7	12	21	1.56
51735952--51735979	5	5.6	5	100	0	56	42	35	0	21	1.53
51737190--51737223	12	3.0	11	87	8	50	85	0	11	2	0.71
51743189--51743438	83	3.0	83	100	0	500	29	14	27	28	1.95
51756671--51756697	10	2.7	10	100	0	54	25	0	0	74	0.83
51757355--51757473	50	2.4	50	81	2	143	42	11	20	26	1.86
51769259--51769292	18	1.9	18	88	5	52	41	11	2	44	1.56
51770464--51770577	35	3.3	35	82	4	140	42	19	7	29	1.79
51773108--51774017	39	23.3	39	98	0	1709	23	25	28	23	2.00
51776013--51776078	27	2.5	25	73	11	60	45	16	9	28	1.78
51784837--51784874	14	2.6	15	95	4	69	44	0	15	39	1.47
51796249--51796332	43	2.0	43	82	0	105	22	15	29	32	1.95
51802557--51802641	43	2.0	43	86	4	118	23	17	30	28	1.97
51807343--51807397	18	3.1	18	83	0	65	45	14	16	23	1.84
51807693--51807973	27	10.4	27	76	5	237	35	18	15	29	1.92
51807697--51807973	54	5.1	54	78	3	272	35	18	15	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51807723--51807961	81	3.0	81	96	0	433	36	18	14	29	1.91
51810983--51811016	16	2.1	17	88	5	52	20	20	11	47	1.81
51812456--51812506	18	2.8	19	79	8	61	45	9	19	25	1.81
51812835--51813083	27	9.4	27	76	10	160	39	18	15	26	1.90
51812835--51813083	53	4.7	53	79	4	202	39	18	15	26	1.90
51812844--51813038	27	7.3	27	76	9	166	40	17	15	26	1.90
51813016--51813063	23	2.1	23	92	0	78	43	18	14	22	1.87
51827089--51827126	15	2.4	16	86	4	51	26	2	10	60	1.43
51829839--51829911	33	2.2	33	82	4	94	45	10	20	23	1.83
51831655--51831830	68	2.6	68	76	13	159	22	28	15	33	1.95
51833714--51833747	18	1.9	18	94	5	61	47	2	0	50	1.16
51848666--51848717	10	5.1	10	84	11	52	34	0	5	59	1.21
51848665--51848708	22	2.0	22	90	0	70	38	0	4	56	1.20
51852806--51852860	26	2.1	26	83	6	67	40	23	14	21	1.90
51853168--51853248	33	2.4	34	75	8	85	28	17	23	30	1.97
51858964--51858997	17	2.1	16	88	5	50	76	14	0	8	1.01
51863212--51863387	46	3.8	46	76	10	178	20	21	28	28	1.98
51863208--51863380	93	1.9	93	90	0	274	20	21	29	27	1.98
51866241--51866320	15	5.4	15	77	7	83	10	18	13	57	1.64
51866232--51866319	30	3.0	30	80	11	92	10	18	15	55	1.68
51867848--51867944	49	2.0	49	95	0	176	20	25	21	31	1.98
51869058--51869230	46	3.7	46	76	7	188	22	20	26	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51869055--51869225	93	1.8	93	91	0	279	22	21	27	29	1.99
51876528--51876607	42	1.9	42	82	5	99	26	32	21	20	1.97
51877949--51878061	43	2.6	42	77	10	120	27	17	26	28	1.98
51883220--51883263	22	2.0	22	86	8	63	40	0	2	56	1.11
51888442--51888612	46	3.7	45	75	14	170	30	30	18	20	1.96
51893933--51893963	16	1.9	16	93	0	53	25	22	16	35	1.94
51895918--51895993	38	2.0	38	100	0	152	44	13	15	26	1.83
51920598--51920821	40	5.6	40	91	1	308	26	28	20	24	1.99
51920601--51920860	80	3.3	80	85	2	256	26	28	20	24	1.99
51920596--51920860	120	2.2	118	81	6	309	27	28	20	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235