genome.fa.s4.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  110  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37890912--37890978	30	2.2	30	94	0	116	40	14	7	37	1.75
37890909--37890966	18	3.6	18	71	26	65	37	15	6	39	1.74
37893072--37893158	34	2.6	34	84	0	129	32	24	13	29	1.94
37894124--37894166	18	2.4	18	96	0	77	32	25	27	13	1.94
37898804--37898864	23	2.6	23	76	2	59	62	6	9	21	1.49
37902398--37902438	21	2.0	21	90	0	64	48	4	2	43	1.37
37902974--37903020	18	2.5	19	80	13	53	31	0	2	65	1.04
37902933--37903018	11	7.7	11	72	8	59	31	0	3	65	1.10
37903127--37903176	23	2.2	23	100	0	100	42	0	0	58	0.98
37904769--37904799	2	15.5	2	100	0	62	51	0	48	0	1.00
37905097--37905135	12	3.5	12	86	13	57	25	5	7	61	1.44
37905313--37905342	15	1.9	16	93	6	53	3	40	53	3	1.34
37909254--37909305	6	8.7	6	86	0	68	1	36	30	30	1.69
37914286--37914345	3	19.7	3	76	10	50	0	33	0	66	0.92
37916393--37916430	15	2.8	14	88	11	53	10	13	2	73	1.19
37919039--37919310	48	5.7	48	73	12	186	25	30	18	26	1.98
37925975--37925999	13	1.9	13	100	0	50	48	12	0	40	1.40
37928849--37928874	9	2.9	9	100	0	52	34	11	19	34	1.88
37929474--37929506	12	2.6	13	85	9	50	9	45	0	45	1.35
37930296--37930327	8	4.0	8	91	0	55	46	25	25	3	1.67
37930574--37930638	28	2.3	28	94	0	112	33	27	7	30	1.85
37930744--37930844	28	3.6	27	85	5	130	19	25	22	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37930744--37930858	55	2.1	55	83	8	144	19	24	21	34	1.96
37931296--37931334	19	2.1	19	85	0	51	15	5	7	71	1.26
37935460--37935567	26	4.2	26	93	0	189	36	24	7	32	1.83
37938750--37938783	15	2.3	15	90	10	52	64	14	0	20	1.28
37940420--37940477	28	2.1	28	100	0	116	29	13	20	36	1.91
37944766--37944880	43	2.7	44	85	8	139	27	14	22	34	1.94
37944809--37944905	43	2.3	43	82	7	117	30	16	21	30	1.95
37945355--37945432	33	2.4	33	87	8	106	42	19	20	17	1.90
37948849--37949026	46	3.9	46	100	0	356	24	27	14	33	1.94
37950671--37950738	30	2.3	30	84	5	84	27	19	5	47	1.72
37951225--37951302	33	2.4	32	78	6	84	32	17	24	25	1.97
37951604--37951669	30	2.2	30	81	10	73	46	7	18	27	1.75
37951882--37951945	29	2.1	31	83	11	80	35	0	3	60	1.12
37951923--37951947	8	3.1	8	100	0	50	24	0	0	76	0.80
37960097--37960134	6	6.5	6	90	9	53	0	15	0	84	0.63
37960099--37960134	16	2.2	16	90	0	54	0	13	0	86	0.58
37961178--37961234	22	2.5	23	77	5	62	36	1	5	56	1.32
37972142--37972200	29	2.0	30	86	3	84	52	13	6	27	1.65
37975687--37975725	21	1.9	21	84	5	53	71	2	7	17	1.21
37982087--37982151	32	2.0	32	100	0	130	30	6	24	38	1.80
37984401--37984437	17	2.2	17	95	0	65	35	24	5	35	1.78
37986528--37986581	25	2.2	25	100	0	108	27	7	24	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37987775--37987900	33	3.8	33	67	12	80	32	18	24	24	1.97
37991741--37991809	30	2.3	31	80	9	81	31	17	4	46	1.68
37992842--37992887	14	3.1	15	75	18	51	43	17	0	39	1.49
37993847--37993881	17	2.1	17	100	0	70	40	22	5	31	1.78
38000214--38000295	40	2.0	40	100	0	164	30	9	18	41	1.82
38000220--38000285	20	3.2	22	60	24	52	28	10	16	43	1.81
38015541--38015577	16	2.3	15	86	13	56	43	2	0	54	1.14
38016603--38016657	25	2.2	25	90	0	83	40	18	12	29	1.87
38017073--38017108	18	2.0	18	88	0	54	30	0	2	66	1.06
38018626--38018776	53	2.8	53	89	4	214	25	16	27	29	1.97
38027073--38027138	31	2.1	31	85	0	87	39	6	6	48	1.53
38029814--38030248	227	1.9	227	99	0	861	27	29	18	24	1.98
38035392--38035454	28	2.2	28	86	5	83	31	28	6	33	1.82
38041150--38041197	9	5.3	9	78	7	53	72	2	0	25	0.95
38044264--38044529	135	2.0	135	89	0	406	25	27	13	33	1.94
38052771--38052905	58	2.3	57	82	5	164	43	0	3	51	1.24
38053261--38053328	27	2.5	27	85	4	93	27	22	29	20	1.98
38056815--38056885	33	2.2	33	82	5	81	30	11	38	19	1.87
38059890--38060012	60	2.0	61	90	1	194	56	9	0	33	1.32
38060166--38060220	13	4.2	13	80	19	69	0	30	0	69	0.89
38060165--38060217	27	1.9	27	85	11	72	0	30	0	69	0.88
38060791--38060861	16	4.4	16	94	0	115	29	30	7	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38066656--38066687	15	2.1	15	100	0	64	50	25	6	18	1.70
38067223--38068221	500	2.0	499	99	0	1971	22	29	12	36	1.90
38071935--38071960	13	2.0	13	100	0	52	38	7	53	0	1.30
38076610--38076685	32	2.4	32	80	4	82	30	3	15	50	1.63
38079022--38079192	84	2.0	84	96	0	315	28	15	27	28	1.96
38082290--38082322	16	1.9	18	88	11	52	39	0	6	54	1.25
38085621--38085650	5	6.0	5	96	0	51	3	80	16	0	0.85
38085658--38085750	45	2.1	45	87	4	134	30	3	7	59	1.41
38087195--38087240	16	2.9	16	86	0	65	47	0	21	30	1.51
38087433--38087477	21	2.1	21	91	0	72	57	4	0	37	1.19
38087640--38087674	13	2.8	12	87	8	52	62	0	5	31	1.18
38087640--38087674	12	2.8	13	91	8	56	62	0	5	31	1.18
38092091--38092318	48	4.8	48	98	0	438	34	6	27	31	1.81
38092491--38092593	37	2.8	37	96	0	188	23	20	32	24	1.98
38101699--38101931	48	4.9	48	95	0	385	34	6	27	31	1.82
38106363--38106401	3	12.7	3	89	5	60	69	0	30	0	0.89
38106810--38106849	21	1.9	21	90	10	64	22	12	10	55	1.67
38107154--38107194	19	2.2	19	86	4	57	24	0	2	73	0.96
38107187--38107229	20	2.2	20	87	4	61	48	4	0	46	1.22
38107232--38107295	20	3.4	19	85	6	85	40	0	1	57	1.08
38107227--38107288	20	3.2	20	88	9	92	41	0	1	56	1.09
38117619--38117662	19	2.2	20	84	11	56	59	0	4	36	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38117633--38117696	24	2.8	24	81	9	62	59	0	0	40	0.97
38117634--38117717	44	1.9	43	85	7	116	60	0	1	38	1.04
38117667--38117715	19	2.5	20	77	6	57	63	0	2	34	1.06
38119481--38119570	35	2.6	35	83	0	126	40	31	11	17	1.85
38128879--38128923	24	1.9	23	90	4	72	35	0	4	60	1.17
38128879--38128937	24	2.5	24	83	5	66	35	1	3	59	1.24
38147218--38147352	50	2.7	50	98	0	261	17	32	23	26	1.96
38147447--38147478	13	2.5	13	94	0	55	56	12	0	31	1.37
38147690--38147747	30	1.9	30	89	0	89	31	24	3	41	1.71
38150952--38151079	39	3.3	39	89	0	193	21	26	20	31	1.98
38153623--38153683	29	2.1	29	96	0	113	32	9	29	27	1.89
38156818--38156876	23	2.5	22	75	20	57	55	1	3	38	1.26
38160995--38161038	22	2.0	22	86	0	61	52	0	0	47	1.00
38161058--38161099	13	2.9	14	80	13	50	54	0	0	45	0.99
38161062--38161098	16	2.3	16	86	13	58	59	0	0	40	0.97
38161426--38162589	582	2.0	582	100	0	2328	37	16	9	35	1.83
38165583--38165611	7	4.1	7	100	0	58	72	0	13	13	1.13
38165765--38165816	15	3.2	15	73	19	50	55	1	0	42	1.10
38166235--38166280	20	2.4	19	85	10	58	47	13	6	32	1.68
38167799--38167887	44	2.0	44	100	0	178	39	11	11	38	1.77
38170716--38170827	55	2.0	55	94	0	197	38	10	16	33	1.84
38172654--38172706	22	2.4	23	90	9	92	32	3	45	18	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38179606--38179667	27	2.3	27	86	2	81	32	11	12	43	1.79
38183392--38183435	22	1.9	24	81	9	56	29	4	9	56	1.50
38186407--38186434	14	2.0	14	100	0	56	35	7	21	35	1.81
38187198--38187358	42	3.8	42	93	1	261	32	21	22	22	1.98
38187200--38187453	42	6.1	41	85	4	206	30	20	20	28	1.98
38187513--38187546	14	2.4	14	95	0	59	52	20	8	17	1.71
38187770--38187840	21	3.4	21	80	0	79	2	45	18	33	1.64
38193318--38193553	9	27.9	9	71	13	117	29	3	22	44	1.70
38193317--38193553	52	4.7	50	84	4	253	29	3	21	44	1.70
38193430--38193461	16	2.0	16	93	0	55	21	6	18	53	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235