genome.fa.s4.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  162  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54665854--54665921	29	2.3	29	85	5	93	27	30	13	27	1.94
54665743--54666070	174	1.9	174	96	0	602	31	24	14	30	1.94
54666030--54666101	29	2.5	30	82	13	96	30	29	12	27	1.93
54671207--54671460	68	3.9	65	76	10	205	24	27	17	30	1.97
54672126--54672186	30	2.0	30	83	0	77	31	22	8	37	1.84
54673066--54673248	46	4.0	44	77	13	149	26	18	30	25	1.98
54673120--54673238	48	2.6	45	83	10	143	27	15	29	26	1.96
54673212--54673486	49	5.6	49	74	17	250	25	19	30	24	1.98
54673207--54673438	99	2.3	99	99	0	455	25	19	30	25	1.98
54683978--54684194	40	5.5	39	86	3	206	24	20	28	26	1.99
54697977--54698182	85	2.4	85	100	0	412	38	8	26	26	1.85
54712287--54712471	79	2.3	80	82	7	207	24	22	26	25	2.00
54712287--54712471	40	4.7	40	81	6	207	24	22	26	25	2.00
54712340--54712504	79	2.1	79	82	6	192	26	21	26	26	1.99
54716706--54716764	22	2.5	24	83	10	68	59	1	3	35	1.24
54716768--54716804	12	3.0	12	84	7	56	59	0	5	35	1.20
54716768--54716838	13	5.2	13	73	20	56	60	0	5	33	1.20
54716747--54716809	32	1.9	33	83	6	83	57	0	3	39	1.15
54716768--54716837	25	2.9	25	80	6	72	60	0	5	34	1.21
54716783--54716845	21	3.0	20	73	19	56	61	0	4	33	1.17
54718760--54718820	30	2.0	30	87	0	86	31	22	8	37	1.84
54720662--54720697	18	1.9	19	88	5	56	11	2	5	80	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54720959--54721469	44	11.6	44	86	2	623	27	27	14	30	1.95
54725935--54725982	20	2.4	20	96	0	87	47	4	18	29	1.67
54730793--54730970	27	6.6	27	83	3	205	26	15	28	29	1.96
54730794--54730949	82	1.9	81	88	3	233	26	15	28	29	1.96
54730790--54730970	82	2.2	81	83	2	229	27	15	27	29	1.96
54745841--54745908	22	2.8	24	82	8	68	58	1	4	35	1.27
54745882--54745944	32	1.9	33	83	6	83	57	1	3	38	1.24
54745918--54745980	21	3.0	20	73	19	56	61	1	3	33	1.21
54746909--54746948	17	2.4	17	100	0	80	15	10	42	32	1.79
54747031--54747060	16	1.9	16	93	6	53	13	0	3	83	0.77
54747031--54747068	18	2.3	18	86	13	55	10	2	5	81	0.94
54750592--54750672	26	3.0	26	89	10	135	39	3	25	30	1.73
54755445--54755705	27	9.7	27	86	2	328	28	12	16	42	1.84
54755445--54755705	81	3.2	81	87	0	380	28	12	16	42	1.84
54755685--54755841	27	5.8	27	90	3	210	41	19	16	22	1.90
54755685--54755868	27	6.8	27	87	6	189	40	19	17	22	1.91
54755685--54755867	81	2.3	81	83	5	219	40	19	17	22	1.91
54755908--54755951	23	2.0	22	86	13	63	25	15	18	40	1.90
54759123--54759306	40	4.7	40	81	11	186	25	22	26	25	2.00
54759175--54759339	79	2.1	79	82	8	194	26	21	27	24	1.99
54775474--54775538	7	9.3	7	85	12	55	58	0	1	40	1.07
54775497--54775527	8	3.8	8	95	4	53	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54784559--54784734	46	3.8	46	76	14	191	22	19	28	30	1.98
54784556--54784726	93	1.8	93	91	2	281	22	19	28	29	1.98
54793469--54793498	10	3.1	10	95	4	53	40	0	40	20	1.52
54795863--54796017	43	3.6	43	77	12	131	25	17	24	32	1.97
54795876--54796017	44	3.3	42	80	9	128	26	18	24	30	1.98
54796224--54796272	20	2.4	22	80	13	59	38	2	22	36	1.66
54797532--54797565	17	2.0	17	94	0	59	17	2	11	67	1.34
54798860--54798884	11	2.3	11	100	0	50	64	0	28	8	1.22
54801744--54801826	23	3.7	23	82	4	89	40	24	18	16	1.90
54803528--54803579	25	2.1	25	88	0	77	34	15	11	38	1.83
54814886--54815102	40	5.5	40	84	4	253	24	27	23	23	2.00
54814921--54815102	79	2.3	80	85	4	244	25	28	24	21	1.99
54818571--54819669	47	23.4	47	93	0	1802	28	29	8	33	1.87
54818571--54819669	94	11.7	94	98	0	2018	28	29	8	33	1.87
54823176--54823320	43	3.4	42	83	10	152	22	16	27	33	1.95
54824839--54824890	25	2.1	25	85	0	68	36	15	9	38	1.80
54828065--54828117	26	2.0	26	82	13	65	26	15	22	35	1.93
54829608--54829689	26	3.2	26	96	0	155	35	25	7	31	1.84
54831121--54831211	45	2.0	45	93	0	155	25	30	10	32	1.90
54836661--54836716	26	2.2	26	100	0	112	35	26	7	30	1.83
54842291--54842454	46	3.6	45	84	9	183	29	16	29	23	1.96
54854512--54854870	46	7.7	46	74	12	331	23	21	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54854558--54854819	47	5.6	47	74	12	270	24	20	26	27	1.99
54854509--54854865	93	3.8	93	98	0	669	23	21	27	27	1.99
54858252--54858429	27	6.6	27	84	3	205	29	28	15	26	1.96
54858273--54858428	82	1.9	81	88	3	233	29	28	15	26	1.96
54866315--54866492	27	6.6	27	84	3	205	29	28	15	26	1.96
54866336--54866491	82	1.9	81	88	3	233	29	28	15	26	1.96
54871277--54871454	49	3.6	48	75	13	150	25	21	28	24	1.99
54881324--54881501	27	6.6	27	84	3	205	29	28	15	26	1.96
54881345--54881500	82	1.9	81	88	3	233	29	28	15	26	1.96
54885434--54885833	200	2.0	200	98	0	764	30	27	15	26	1.96
54889665--54889842	27	6.6	27	84	3	205	29	28	15	26	1.96
54889686--54889841	82	1.9	81	88	3	233	29	28	15	26	1.96
54901996--54902220	40	5.6	40	83	5	258	25	24	26	23	2.00
54901996--54902256	80	3.3	80	83	3	312	26	23	26	24	2.00
54901996--54902256	120	2.2	120	83	6	325	26	23	26	24	2.00
54908790--54908919	46	2.8	46	90	2	199	28	27	22	21	1.99
54908799--54908938	46	3.0	45	83	8	133	27	27	22	22	1.99
54915995--54916111	62	1.9	59	82	5	144	41	4	3	50	1.38
54921362--54921399	18	2.1	18	100	0	76	44	34	10	10	1.73
54927985--54928110	49	2.6	49	82	5	139	28	19	29	22	1.98
54930452--54930629	27	6.6	27	83	3	196	26	15	28	29	1.96
54930453--54930603	82	1.9	81	88	4	232	27	16	27	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54938513--54938690	27	6.6	27	83	3	196	26	15	28	29	1.96
54938514--54938664	82	1.9	81	88	4	232	27	16	27	28	1.97
54943480--54943632	45	3.4	45	88	0	227	29	27	18	24	1.98
54946999--54947096	46	2.1	45	80	9	108	28	28	21	21	1.99
54951996--54952089	47	2.0	47	91	0	152	27	31	12	27	1.93
54954535--54954706	46	3.7	46	77	13	199	29	27	20	21	1.98
54954540--54954710	93	1.8	93	93	0	297	29	28	21	21	1.98
54955183--54955243	30	2.0	30	83	0	77	34	21	8	36	1.83
54955793--54955915	63	2.0	63	95	0	219	40	13	6	39	1.70
54961891--54962111	40	5.6	40	80	2	232	24	25	23	26	2.00
54967375--54967421	19	2.3	20	82	10	60	36	0	14	48	1.44
54967771--54968109	50	6.8	50	77	3	322	26	17	25	30	1.97
54967871--54968113	101	2.4	101	78	4	231	26	17	24	31	1.97
54967825--54968109	151	1.9	151	88	0	426	26	17	24	31	1.97
54971358--54971419	26	2.4	26	76	7	65	17	11	14	56	1.67
54971402--54971445	15	2.9	15	90	6	63	13	20	13	52	1.74
54971402--54971460	30	2.0	30	83	6	75	13	20	13	52	1.74
54974385--54974662	50	5.7	49	76	11	200	25	19	24	30	1.98
54981409--54981447	12	3.2	12	88	0	60	30	35	23	10	1.88
54986523--54986649	46	2.7	48	82	3	150	30	18	27	22	1.98
54986621--54986736	49	2.4	49	82	2	126	31	24	23	21	1.99
54991914--54992134	40	5.6	40	78	2	214	25	25	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54999994--55000214	40	5.6	40	76	2	196	25	24	23	26	2.00
55007547--55007668	46	2.6	46	82	2	136	31	18	27	22	1.98
55011019--55011130	42	2.7	42	79	6	111	28	17	25	27	1.98
55013668--55013757	24	3.7	23	74	12	74	34	17	22	25	1.96
55017856--55017955	51	2.0	51	82	7	123	32	25	17	26	1.97
55022235--55022402	40	4.2	40	82	8	148	27	27	20	24	1.99
55022270--55022455	80	2.3	80	83	9	229	27	27	20	23	1.99
55022272--55022455	40	4.6	40	83	7	205	27	27	21	23	1.99
55027206--55027230	13	1.9	13	100	0	50	0	40	28	32	1.57
55028133--55028246	55	2.1	54	87	6	160	35	22	23	17	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235