genome.fa.s4.2.7.7.80.10.50.1000.214.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  214  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72573302--72573486	82	2.3	82	74	13	186	61	4	1	32	1.24
72573302--72573422	21	5.8	20	73	18	70	60	4	1	33	1.26
72573234--72573485	41	6.1	41	71	14	164	63	3	1	30	1.22
72573307--72573493	61	3.1	59	73	15	166	62	5	1	31	1.24
72573999--72574042	9	4.4	11	91	5	51	34	2	0	63	1.07
72573998--72574031	9	3.7	9	96	4	59	38	0	0	61	0.96
72585327--72585351	7	3.6	7	100	0	50	48	16	24	12	1.79
72587798--72587838	21	1.9	22	85	5	57	31	9	4	53	1.55
72591457--72591497	21	2.0	21	85	0	55	73	2	9	14	1.19
72592358--72592405	5	9.4	5	93	2	78	20	18	0	60	1.36
72592842--72592871	15	2.0	15	93	0	51	26	3	26	43	1.70
72597180--72597214	16	2.1	17	89	5	54	40	0	5	54	1.24
72597203--72597319	60	2.0	60	83	10	150	35	5	17	40	1.75
72597501--72597537	17	2.1	19	85	10	51	40	5	2	51	1.39
72597798--72597937	69	2.0	69	95	0	253	30	17	25	27	1.97
72598769--72598805	6	6.2	6	93	0	65	16	35	0	48	1.46
72603423--72603535	30	3.8	30	96	0	199	23	47	3	24	1.67
72604869--72604900	13	2.5	13	94	0	55	62	9	6	21	1.47
72604980--72605648	88	7.7	87	81	10	592	36	18	17	27	1.93
72604980--72605540	170	3.2	170	82	8	673	35	18	16	28	1.93
72604980--72605641	258	2.5	256	81	7	640	36	18	17	27	1.93
72606964--72607109	37	3.9	37	89	0	211	26	32	18	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72607272--72607504	47	5.0	47	93	0	385	25	29	12	32	1.93
72607308--72607383	23	3.2	25	63	24	63	22	34	14	28	1.93
72607357--72607479	22	5.3	22	63	24	65	26	28	13	32	1.93
72607339--72607525	94	2.0	90	85	8	252	30	26	11	32	1.91
72610510--72610544	7	4.9	7	96	3	61	0	14	0	85	0.59
72621499--72622223	363	2.0	363	95	0	1315	34	15	19	30	1.93
72623032--72623063	14	2.3	14	94	0	55	56	6	12	25	1.59
72623047--72623174	49	2.7	45	81	11	141	56	6	4	32	1.45
72623573--72623610	3	12.3	3	94	5	67	65	0	0	34	0.93
72623619--72623652	15	2.3	15	90	5	52	64	0	5	29	1.17
72625255--72625362	26	4.2	26	92	0	180	32	6	24	37	1.81
72626913--72626952	22	1.9	22	85	10	57	17	15	20	47	1.83
72627093--72627141	22	2.3	21	82	10	55	16	4	48	30	1.64
72629391--72629503	53	2.1	53	86	0	154	34	8	12	44	1.73
72629861--72629896	16	2.2	16	90	0	54	77	5	5	11	1.10
72638135--72638176	10	4.2	10	82	11	50	85	0	14	0	0.59
72638135--72638176	20	2.1	20	90	0	66	85	0	14	0	0.59
72638144--72638176	15	2.1	16	88	5	50	87	0	12	0	0.53
72639478--72639721	43	5.6	43	72	7	179	37	23	18	20	1.94
72639420--72639725	130	2.3	130	90	1	477	37	21	19	21	1.95
72641576--72641604	10	3.0	10	95	5	51	37	0	0	62	0.96
72641828--72641852	11	2.3	11	100	0	50	36	0	8	56	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72641837--72641892	24	2.3	25	78	9	62	35	5	3	55	1.40
72644849--72644936	27	3.3	27	81	10	108	39	19	22	18	1.92
72644849--72644952	27	3.8	26	76	7	91	38	22	21	18	1.93
72644842--72644952	54	2.1	54	83	6	136	38	22	20	18	1.93
72646190--72646229	16	2.4	17	91	8	73	82	0	17	0	0.67
72653899--72653984	27	3.2	27	79	11	86	18	20	22	38	1.94
72656329--72656358	8	3.8	8	90	0	51	50	23	23	3	1.64
72656775--72656885	27	4.1	26	73	7	96	18	20	20	40	1.91
72658771--72658882	27	4.2	26	82	7	125	38	22	23	16	1.93
72658773--72658879	54	2.0	54	88	3	162	39	20	23	16	1.92
72675980--72676008	14	2.1	14	100	0	58	31	13	6	48	1.69
72682242--72682342	27	3.8	27	89	6	152	37	20	24	16	1.93
72691349--72691459	29	3.9	28	84	5	127	24	16	28	30	1.96
72691346--72691459	58	2.0	57	86	8	160	24	15	28	30	1.96
72716024--72716185	41	3.9	41	75	16	156	27	27	21	22	1.99
72717605--72717646	14	3.1	14	79	6	50	59	9	2	28	1.41
72719107--72719178	36	2.0	36	97	0	135	16	48	4	30	1.65
72719295--72719335	21	2.0	21	95	0	73	41	36	12	9	1.76
72719630--72719661	16	2.0	16	93	0	55	12	15	18	53	1.73
72719739--72719826	45	2.0	45	93	0	149	32	14	12	39	1.84
72719829--72719901	36	2.0	36	89	0	110	31	9	10	47	1.71
72719869--72719968	43	2.4	41	81	5	110	34	14	10	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72720011--72720083	36	2.0	36	89	0	110	32	9	10	46	1.71
72720193--72720265	36	2.0	36	89	0	110	32	9	10	46	1.71
72720375--72720447	36	2.0	36	89	0	110	32	9	10	46	1.71
72720561--72720633	36	2.0	36	91	0	119	32	9	9	47	1.68
72719773--72720639	182	4.7	182	97	0	1572	33	13	12	41	1.81
72722508--72722604	28	3.5	28	90	4	144	28	11	26	32	1.91
72722508--72722618	28	4.0	27	82	8	82	30	10	25	33	1.90
72726426--72726504	29	2.7	29	86	5	106	27	32	15	24	1.95
72727731--72727844	55	2.1	55	96	1	212	36	19	11	32	1.87
72728559--72728637	37	2.1	37	86	4	106	25	30	17	26	1.97
72728756--72728947	47	4.1	47	88	0	276	27	29	9	33	1.89
72732181--72732233	25	2.0	26	89	7	81	20	15	15	49	1.80
72732251--72732439	96	2.0	96	93	0	324	27	9	24	38	1.86
72741642--72742456	5	162.8	5	99	0	1605	40	0	0	59	0.97
72745850--72745890	21	2.0	21	100	0	82	34	17	9	39	1.82
72745894--72745936	22	2.0	22	86	4	61	34	0	11	53	1.37
72746752--72746937	27	6.9	27	86	2	239	30	23	6	39	1.81
72746746--72746937	81	2.4	81	88	0	276	29	22	7	40	1.81
72746966--72747090	27	4.6	27	87	3	180	42	20	8	29	1.80
72746936--72747090	54	2.9	54	84	3	179	40	19	10	29	1.84
72747099--72747182	27	3.0	27	75	17	82	42	15	8	33	1.77
72747199--72747300	27	3.8	27	72	10	73	38	19	19	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72748110--72748199	25	3.6	25	89	0	135	27	23	22	26	1.99
72748110--72748204	50	1.9	50	93	0	163	28	23	21	27	1.99
72748352--72748443	42	2.2	42	96	0	166	27	11	21	39	1.89
72748467--72748574	31	3.5	31	87	5	132	28	18	25	27	1.98
72757877--72757914	19	2.0	19	100	0	76	31	5	0	63	1.17
72760747--72760894	73	2.0	73	96	0	269	33	15	10	39	1.82
72762913--72762953	15	2.7	15	88	0	64	12	19	9	58	1.61
72770516--72770625	44	2.6	43	81	7	125	25	19	24	30	1.98
72777482--72777638	43	3.6	44	78	7	162	26	19	22	31	1.98
72788955--72789027	29	2.6	28	82	2	83	26	13	31	28	1.94
72788942--72789027	28	3.0	28	79	3	100	27	12	30	29	1.93
72795793--72795913	47	2.5	47	85	2	152	28	30	8	33	1.86
72808892--72809159	56	4.8	56	85	1	349	33	25	14	26	1.94
72810778--72810825	22	2.2	22	92	0	78	35	18	16	29	1.93
72815077--72815401	56	5.8	56	81	3	332	34	23	14	28	1.93
72815091--72815400	112	2.8	112	81	7	396	35	22	13	28	1.93
72815077--72815401	168	1.9	168	84	3	431	34	23	14	28	1.93
72821331--72821507	49	3.6	48	77	8	169	23	18	26	31	1.98
72821327--72821511	100	1.9	100	88	2	282	23	19	26	30	1.98
72824646--72824827	51	3.7	49	80	9	174	24	18	26	30	1.98
72824642--72824827	101	1.9	101	93	1	320	24	19	26	30	1.98
72828858--72829039	41	4.5	40	86	3	213	34	22	23	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72828869--72829259	82	4.9	82	76	9	335	30	21	23	23	1.99
72829017--72829070	27	2.0	27	92	0	90	22	22	29	25	1.99
72828976--72829112	69	2.0	69	88	1	204	29	23	23	24	1.99
72829044--72829259	41	5.2	41	85	0	243	30	20	24	24	1.99
72828885--72829235	192	1.8	192	84	1	479	31	21	23	23	1.98
72830169--72830212	14	3.1	14	80	9	54	20	0	47	31	1.50
72830565--72830642	22	3.6	22	81	6	79	24	1	28	46	1.61
72830607--72830639	14	2.3	15	85	15	52	24	0	30	45	1.53
72830565--72830642	21	3.7	20	78	10	66	24	1	28	46	1.61
72832511--72832614	54	1.9	54	98	0	199	17	24	16	42	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235