genome.fa.s4.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  132  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44774913--44774988	26	3.0	27	76	16	65	57	6	6	28	1.49
44774931--44774988	26	2.3	26	85	5	75	58	5	5	31	1.42
44778593--44778631	20	2.0	20	94	0	69	53	5	7	33	1.51
44780993--44781126	60	2.2	59	78	5	144	35	20	13	29	1.91
44781533--44781589	29	1.9	30	82	10	73	29	5	12	52	1.60
44784958--44785009	23	2.2	24	80	10	63	63	0	0	36	0.95
44784955--44785005	15	3.3	15	76	10	50	66	0	0	33	0.92
44788494--44788550	18	3.2	18	92	0	96	26	24	17	31	1.97
44793649--44793730	27	3.0	27	96	0	146	45	23	14	17	1.85
44798388--44798442	23	2.4	23	75	24	55	5	12	5	76	1.13
44799556--44799654	49	2.0	51	84	9	132	32	9	1	57	1.37
44803618--44803647	14	2.1	14	93	0	51	16	0	36	46	1.47
44804528--44805046	259	2.0	259	98	0	1011	36	16	12	33	1.87
44805579--44805633	21	2.6	21	77	13	58	61	0	5	32	1.19
44805596--44805670	28	2.6	29	74	16	75	60	1	5	33	1.28
44807401--44808271	44	19.9	44	86	3	981	27	26	15	31	1.96
44808939--44808987	25	2.0	25	100	0	98	28	12	12	46	1.77
44812489--44812529	17	2.4	17	88	8	57	75	0	17	7	1.02
44823015--44823090	28	2.6	29	76	17	77	60	2	5	31	1.33
44828468--44828511	21	2.1	21	86	0	61	56	6	9	27	1.55
44832103--44832128	13	2.0	13	100	0	52	84	0	15	0	0.62
44841465--44841507	21	2.0	23	90	9	72	30	2	4	62	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44841805--44841838	15	2.3	15	89	0	50	29	0	2	67	1.05
44841863--44841916	12	4.8	12	75	13	53	31	12	1	53	1.50
44843319--44843371	21	2.5	21	87	6	72	20	30	35	13	1.91
44845216--44845307	46	2.0	46	89	0	139	27	23	22	26	2.00
44845262--44845320	31	1.9	31	100	0	118	25	25	20	28	1.99
44845300--44845476	50	3.5	50	93	0	291	25	23	16	35	1.95
44848401--44848470	25	2.8	25	93	0	113	30	21	24	24	1.99
44850979--44851060	42	2.0	42	82	4	103	29	28	26	15	1.96
44853053--44853091	16	2.4	16	78	0	51	48	2	2	46	1.29
44856774--44856990	45	4.9	44	81	11	182	20	54	5	18	1.65
44856821--44857047	24	10.3	24	67	18	136	18	55	5	20	1.63
44856843--44857116	21	13.0	21	68	19	144	19	53	5	21	1.65
44856888--44857083	63	3.1	63	86	4	209	18	55	5	20	1.62
44857040--44857125	39	2.2	39	89	4	129	24	51	4	19	1.66
44856953--44857086	63	2.1	63	95	0	241	17	55	4	21	1.59
44856821--44857129	42	7.3	43	77	11	192	20	53	5	20	1.65
44858341--44858407	30	2.3	29	81	2	80	31	0	4	64	1.14
44858356--44858434	41	2.0	41	84	2	106	34	1	3	60	1.23
44858542--44858588	15	3.0	15	84	6	58	27	2	4	65	1.22
44861690--44861764	37	2.0	38	87	7	109	16	18	8	57	1.63
44863987--44864020	13	2.6	13	85	0	50	35	8	17	38	1.81
44865397--44865459	30	2.1	30	82	8	74	46	11	6	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44866509--44866573	25	2.6	25	92	0	103	46	20	18	15	1.84
44866539--44866649	23	4.7	23	75	8	100	42	25	18	14	1.87
44866567--44866655	46	1.9	46	84	4	117	43	23	16	15	1.87
44872155--44872211	23	2.5	23	88	0	78	40	26	5	28	1.77
44872245--44872311	25	2.7	25	92	0	107	49	16	17	16	1.80
44872301--44872392	23	4.0	23	78	5	105	43	25	14	17	1.86
44872302--44872391	46	2.0	46	88	0	135	44	25	14	15	1.84
44873782--44873812	12	2.7	12	95	5	55	74	0	0	25	0.82
44873829--44873880	22	2.3	23	80	9	63	59	13	9	17	1.60
44873841--44873881	11	3.7	11	80	0	55	56	9	14	19	1.66
44874495--44874539	4	10.8	4	82	17	56	20	2	4	73	1.11
44874491--44874542	26	2.0	26	100	0	104	19	3	7	69	1.29
44875509--44875566	24	2.4	24	80	5	73	51	12	12	24	1.72
44893339--44893387	17	3.0	16	79	11	55	57	6	2	34	1.35
44893398--44893463	18	3.7	19	69	20	54	59	3	3	34	1.28
44898475--44898529	25	2.2	25	90	6	85	34	3	0	61	1.13
44907663--44907734	31	2.4	30	79	4	81	40	13	12	33	1.83
44914231--44914384	31	5.0	31	75	7	127	28	15	16	39	1.89
44914228--44914385	62	2.5	62	89	2	237	27	16	15	39	1.89
44914345--44914433	45	2.0	45	86	4	126	29	19	11	40	1.86
44916149--44916193	19	2.4	19	88	0	72	42	11	4	42	1.60
44917616--44917690	38	2.0	38	89	0	114	34	22	9	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44924715--44924763	3	15.7	3	87	8	71	67	30	2	0	1.02
44928071--44928115	22	2.0	22	100	0	90	40	13	22	24	1.90
44931754--44931799	16	2.9	16	93	0	74	34	15	6	43	1.72
44943580--44943611	12	2.7	12	100	0	64	37	6	25	31	1.81
44944330--44944624	78	3.8	78	91	1	475	31	19	24	24	1.98
44944641--44944837	45	4.4	45	84	1	252	31	13	29	25	1.93
44944641--44944837	89	2.2	90	84	3	263	31	13	29	25	1.93
44945380--44945432	17	2.9	18	83	8	72	39	9	15	35	1.79
44961507--44961604	49	2.0	49	97	0	187	17	20	26	35	1.94
44965345--44965398	22	2.5	21	85	8	65	12	31	18	37	1.89
44965865--44965905	20	2.0	22	85	9	59	21	0	19	58	1.39
44965865--44965912	20	2.2	22	82	10	55	22	0	18	58	1.39
44971957--44972050	37	2.5	38	78	15	97	48	1	13	36	1.50
44973921--44974222	44	6.9	42	71	13	152	31	26	14	27	1.95
44973977--44974507	87	6.0	88	79	5	511	29	26	16	28	1.97
44973977--44974548	44	13.0	43	74	7	454	29	25	15	28	1.96
44974105--44974553	132	3.4	132	93	0	736	30	24	16	28	1.97
44990286--44990476	90	2.1	90	92	0	310	32	17	9	39	1.83
44991996--44992037	19	2.2	19	91	8	68	52	4	0	42	1.22
44992455--44992580	4	31.5	4	95	0	198	26	3	23	46	1.70
44993715--44993759	14	3.1	14	80	3	54	22	8	31	37	1.85
44997467--44997639	46	3.8	45	72	13	136	30	29	19	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45006825--45006853	9	3.2	9	100	0	58	20	10	34	34	1.87
45023175--45023214	19	2.1	19	90	4	62	45	5	2	47	1.38
45024037--45024156	49	2.4	49	83	0	132	35	17	20	27	1.95
45030484--45030514	4	7.8	4	100	0	62	25	0	22	51	1.48
45032774--45032857	41	2.0	41	97	0	159	25	22	17	34	1.96
45035652--45035813	35	4.6	36	84	1	188	32	24	12	30	1.93
45035652--45035813	70	2.3	70	85	0	207	32	24	12	30	1.93
45037545--45037602	30	1.9	30	86	6	82	15	29	32	22	1.95
45046636--45046667	12	2.7	12	95	0	55	50	3	0	46	1.17
45052887--45053085	35	5.7	35	86	1	265	31	26	13	29	1.93
45057983--45058040	30	1.9	30	82	6	73	18	25	32	22	1.97
45058472--45058514	16	2.6	16	82	10	52	2	48	0	48	1.14
45060361--45060471	6	18.3	6	78	2	98	14	3	7	74	1.16
45060361--45060458	18	5.4	18	82	0	115	14	4	7	74	1.18
45060373--45060458	36	2.4	36	96	0	154	13	3	6	75	1.14
45060720--45060843	59	2.1	59	96	0	230	25	9	21	42	1.83
45076902--45076952	21	2.3	22	76	10	59	27	27	1	43	1.66
45078033--45078074	4	10.2	4	80	14	50	47	2	2	47	1.28
45078033--45078088	25	2.1	27	81	15	64	44	5	3	46	1.43
45086008--45086121	56	2.0	56	96	0	210	36	14	21	28	1.92
45093914--45093949	18	1.9	18	88	5	54	47	5	25	22	1.73
45098050--45098077	5	5.6	5	100	0	56	82	0	0	17	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45102499--45102530	5	6.6	5	92	7	57	81	0	0	18	0.70
45102500--45102530	14	2.2	14	100	0	62	80	0	0	19	0.71
45102920--45103084	35	4.7	35	84	1	215	33	24	10	31	1.90
45105408--45105447	19	2.0	20	90	4	64	45	5	0	50	1.23
45106264--45106360	49	2.0	49	85	0	131	35	19	20	24	1.96
45107388--45107466	40	2.0	40	100	0	158	35	20	8	35	1.84
45107592--45107626	4	8.8	4	87	0	52	25	5	22	45	1.74
45112826--45112866	14	2.9	14	77	0	55	21	9	31	36	1.86
45114838--45115022	40	4.7	40	80	6	207	25	27	22	24	2.00
45114838--45115022	79	2.3	81	79	11	202	25	27	22	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235