genome.fa.s4.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  183  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62286239--62286271	15	2.3	15	89	5	50	54	18	3	24	1.57
62286613--62286657	20	2.2	20	92	0	72	35	15	0	48	1.45
62291337--62291361	12	2.1	12	100	0	50	8	24	0	68	1.16
62293771--62293897	48	2.6	49	82	3	150	22	25	22	29	1.99
62294876--62294973	49	2.0	49	100	0	196	22	12	14	51	1.75
62296507--62297235	64	11.2	63	67	13	314	35	13	14	35	1.87
62296503--62297294	131	6.1	131	85	1	944	35	13	14	35	1.86
62300701--62301000	150	2.0	150	99	0	591	30	24	22	22	1.99
62301374--62302266	40	22.3	40	99	0	1707	25	29	20	24	1.99
62310131--62311092	39	24.6	39	97	1	1736	23	28	22	25	2.00
62312065--62312176	55	2.0	56	96	1	208	25	33	10	30	1.90
62324320--62324542	49	4.5	49	81	3	257	30	27	17	24	1.98
62327505--62327655	75	2.0	75	94	0	266	43	1	21	32	1.64
62328112--62328215	43	2.4	43	86	0	145	26	15	24	33	1.95
62328112--62328232	43	2.8	43	83	5	120	25	17	25	31	1.97
62330621--62330686	26	2.5	27	78	9	73	4	18	16	60	1.52
62336018--62336103	31	2.8	31	91	1	147	25	26	16	31	1.96
62336320--62336391	25	2.9	25	82	13	94	27	20	27	23	1.99
62336433--62336470	20	2.0	19	90	10	60	36	21	10	31	1.87
62336521--62336568	25	1.9	25	86	0	69	33	16	18	31	1.94
62338051--62338165	57	2.0	57	91	6	189	24	33	15	26	1.95
62347181--62347266	31	2.8	31	87	1	138	26	26	15	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62347484--62347554	26	2.8	25	85	4	97	28	23	22	25	2.00
62347685--62347732	25	1.9	25	86	0	69	29	16	22	31	1.96
62352105--62352251	43	3.4	44	79	7	160	27	14	24	32	1.95
62355231--62355377	43	3.4	44	79	7	160	27	14	24	32	1.95
62357407--62357537	50	2.7	49	83	8	153	24	29	20	25	1.99
62357550--62357718	46	3.6	46	77	6	171	20	24	22	31	1.98
62357548--62357718	94	1.8	92	85	7	238	20	25	22	31	1.98
62358424--62358448	13	1.9	13	100	0	50	64	16	4	16	1.44
62359562--62359603	18	2.3	18	100	0	84	33	4	19	42	1.72
62360742--62361199	47	9.7	47	99	0	889	32	7	29	29	1.86
62361318--62361396	37	2.1	37	90	0	122	24	18	31	25	1.98
62362490--62362554	32	2.0	32	100	0	130	33	12	23	30	1.91
62363295--62363395	43	2.3	43	100	0	202	22	14	35	26	1.93
62363377--62363450	29	2.6	29	89	4	105	25	16	32	25	1.96
62363798--62363924	40	3.2	40	89	2	184	25	22	25	27	2.00
62363814--62363957	40	3.6	40	89	1	191	25	22	25	25	2.00
62367496--62367901	47	8.6	47	98	0	767	32	8	29	29	1.87
62375516--62375576	30	2.1	29	90	3	95	36	22	16	24	1.94
62380085--62380235	27	5.6	26	80	4	115	26	16	28	28	1.97
62380085--62380210	54	2.3	54	82	8	148	26	16	28	28	1.97
62380112--62380261	55	2.8	54	81	6	160	27	15	30	27	1.96
62380085--62380240	82	1.9	81	81	3	188	26	16	28	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62380112--62380261	27	5.5	27	81	3	113	27	15	30	27	1.96
62387622--62387799	27	6.6	27	83	3	205	26	15	28	29	1.96
62387623--62387778	82	1.9	81	88	3	233	26	15	28	29	1.96
62387619--62387799	82	2.2	81	83	2	229	27	15	27	29	1.96
62387704--62387810	27	3.9	27	85	1	70	26	14	28	30	1.95
62393476--62393536	30	2.1	30	93	3	106	36	22	14	26	1.93
62404833--62404869	20	1.9	20	88	5	58	43	0	32	24	1.55
62404922--62404974	24	2.3	22	74	6	52	47	16	5	30	1.70
62407565--62407633	25	2.8	25	86	0	84	24	24	18	31	1.98
62418244--62418281	19	2.0	20	85	15	53	39	23	0	36	1.55
62425046--62425150	39	2.6	39	86	5	122	24	22	27	24	2.00
62425006--62425169	40	4.1	40	80	12	169	25	23	27	24	2.00
62425006--62425156	79	1.9	80	82	6	191	25	23	27	23	2.00
62432940--62433164	40	5.7	40	87	5	305	24	22	27	25	2.00
62432940--62433197	119	2.2	119	82	6	301	25	21	27	25	2.00
62438576--62438620	21	2.1	21	100	0	90	33	4	17	44	1.69
62443571--62443743	43	4.0	44	78	11	180	32	27	16	23	1.96
62450259--62450309	17	3.0	16	78	13	57	23	3	1	70	1.14
62450272--62450315	18	2.4	18	77	11	54	25	0	2	72	0.96
62454177--62454215	20	2.0	20	89	0	60	38	10	10	41	1.73
62454566--62454629	32	2.0	32	100	0	128	25	15	21	37	1.93
62458443--62458473	16	1.9	16	93	0	53	48	0	9	41	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62465948--62465982	10	3.4	10	88	4	52	80	0	20	0	0.72
62467241--62467418	40	4.5	40	83	4	191	22	23	28	25	1.99
62473234--62473295	31	2.0	32	87	3	90	35	19	22	22	1.96
62475122--62475175	20	2.7	20	91	0	90	22	29	31	16	1.96
62480722--62480899	27	6.6	26	81	7	169	26	15	28	30	1.96
62480723--62480878	82	1.9	81	86	3	224	26	15	28	30	1.96
62480719--62480899	82	2.2	81	82	2	220	26	15	27	30	1.96
62488542--62488645	33	3.2	33	80	10	124	36	13	23	26	1.92
62488542--62488644	32	3.2	31	82	6	116	35	13	23	27	1.92
62488650--62488820	31	5.5	31	76	5	157	28	15	28	28	1.96
62488884--62488948	27	2.4	27	92	0	103	38	13	26	21	1.91
62491209--62491312	33	3.2	33	80	10	124	36	13	23	26	1.92
62491209--62491311	32	3.2	31	82	6	116	35	13	23	27	1.92
62491317--62491487	31	5.5	31	76	5	157	28	15	28	28	1.96
62491551--62491615	27	2.4	27	92	0	103	38	13	26	21	1.91
62493889--62494064	27	6.5	26	81	6	165	26	16	28	28	1.97
62493889--62494044	82	1.9	81	86	3	224	26	16	28	28	1.97
62493885--62494064	82	2.2	81	82	3	218	26	16	27	28	1.97
62502668--62502750	43	1.9	44	97	2	159	40	12	12	34	1.79
62503951--62503982	15	2.1	15	100	0	64	34	12	18	34	1.89
62507941--62508007	31	2.3	27	76	14	71	38	14	10	35	1.81
62509047--62509101	25	2.0	28	83	13	71	47	3	0	49	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62509070--62509134	23	2.8	23	77	9	62	49	1	1	47	1.20
62509071--62509134	12	5.5	12	70	12	53	50	1	1	46	1.20
62518363--62518420	29	2.0	30	82	3	73	41	12	12	34	1.79
62528238--62528289	19	2.9	18	77	8	52	61	0	1	36	1.07
62528226--62528293	16	4.3	15	73	15	57	61	0	1	36	1.05
62529047--62529211	35	4.7	35	99	0	321	36	14	10	37	1.81
62529826--62530184	121	3.0	121	92	0	592	31	18	16	32	1.94
62530176--62530355	44	4.1	44	76	8	177	30	24	14	31	1.95
62531237--62531266	14	2.2	14	94	5	53	6	13	0	80	0.91
62531235--62531288	21	2.6	20	88	8	81	5	11	0	83	0.80
62531243--62531286	13	3.3	13	87	3	52	4	13	0	81	0.83
62531242--62531287	14	3.4	14	83	16	53	4	13	0	82	0.81
62531241--62531289	21	2.3	22	89	3	82	4	12	0	83	0.77
62531385--62531599	109	2.0	109	97	0	403	27	26	12	33	1.93
62535758--62535809	25	2.1	25	96	0	95	17	15	44	23	1.86
62536961--62537070	18	6.1	18	86	6	143	37	11	11	39	1.79
62536961--62537070	35	3.1	35	86	5	141	37	11	11	39	1.79
62536961--62537070	53	2.0	55	91	3	179	37	11	11	39	1.79
62545829--62545855	13	2.1	13	100	0	54	40	22	7	29	1.81
62546356--62546402	22	2.1	22	81	14	53	59	0	0	40	0.97
62546896--62546958	29	2.1	31	82	11	78	34	1	7	55	1.39
62548086--62548117	14	2.3	14	94	0	55	31	0	9	59	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62551313--62551403	42	2.2	42	91	0	155	20	31	24	23	1.98
62551902--62551937	17	2.1	17	100	0	72	47	16	11	25	1.79
62552359--62552509	42	3.6	42	81	3	160	26	25	17	31	1.97
62554346--62554496	42	3.6	42	82	3	169	27	24	17	31	1.97
62561947--62562060	42	2.7	41	86	5	156	28	25	16	28	1.97
62568620--62568692	23	3.2	23	92	0	119	34	0	13	52	1.41
62568629--62568692	13	5.4	13	73	21	68	34	0	14	51	1.42
62574763--62574938	46	3.8	45	81	10	212	21	21	29	28	1.98
62574760--62574930	93	1.8	93	94	0	306	21	21	29	27	1.98
62577841--62577909	15	4.6	15	83	0	84	11	17	13	57	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235