genome.fa.s4.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  88  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30740915--30741077	33	5.0	33	84	3	177	35	10	18	35	1.85
30740915--30741041	65	2.0	65	85	0	173	35	9	18	37	1.83
30758815--30759095	139	2.0	139	97	0	535	29	19	12	38	1.88
30759096--30759267	50	3.5	50	82	9	223	23	30	18	27	1.97
30761887--30761988	28	3.6	28	72	5	89	24	28	16	30	1.97
30763389--30763456	34	2.0	34	91	0	109	22	33	1	42	1.62
30765878--30766006	39	3.3	39	75	4	107	23	24	18	34	1.96
30775597--30775712	40	2.9	40	96	0	205	19	23	30	26	1.98
30775925--30775969	23	2.0	23	91	8	74	31	8	33	26	1.87
30775960--30776060	28	3.5	28	68	10	87	21	20	28	28	1.98
30775964--30776085	58	2.1	58	95	0	217	19	18	31	29	1.96
30775988--30776087	28	3.5	28	68	10	85	19	20	34	27	1.96
30778172--30778266	27	3.4	28	89	2	129	26	12	28	32	1.93
30778197--30778279	27	3.0	27	87	5	96	30	12	25	32	1.92
30778779--30778868	7	12.7	7	97	2	171	14	0	41	44	1.45
30803699--30803848	67	2.2	67	81	8	171	32	17	28	21	1.96
30803723--30803906	67	2.8	64	77	8	185	29	17	29	22	1.97
30806154--30806198	22	2.0	22	100	0	90	46	4	22	26	1.70
30809436--30809644	47	4.3	47	79	9	181	29	28	16	25	1.97
30812109--30812197	30	3.0	30	83	8	119	59	15	14	10	1.60
30812109--30812188	15	5.4	15	85	7	110	61	13	15	10	1.57
30815757--30815968	52	4.3	46	83	6	163	31	29	15	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30815771--30815952	52	3.6	51	81	7	196	29	29	17	24	1.97
30815822--30815955	52	2.6	52	89	2	198	30	28	16	24	1.96
30819212--30819365	77	2.0	77	100	0	308	41	6	23	28	1.79
30821725--30821834	27	4.0	27	88	4	141	29	11	25	33	1.91
30821782--30822007	71	3.2	71	69	17	234	28	13	23	33	1.93
30821911--30821975	27	2.4	28	89	5	98	29	10	23	36	1.88
30821769--30822050	141	2.0	141	100	0	564	28	14	24	33	1.94
30821819--30822035	71	3.1	71	67	18	216	28	14	24	32	1.95
30823241--30823495	128	2.0	128	93	0	438	28	18	23	28	1.98
30829831--30829937	44	2.4	44	92	0	178	32	14	22	29	1.94
30831380--30831538	43	3.7	43	77	5	169	32	23	13	29	1.94
30837649--30837809	55	3.0	53	74	9	137	21	22	18	37	1.94
30838281--30838325	24	1.9	23	86	13	65	64	8	0	26	1.23
30838539--30838635	11	8.8	11	87	0	122	51	34	11	3	1.53
30848160--30848326	46	3.6	47	74	13	166	30	31	18	19	1.96
30848168--30848339	93	1.8	93	88	2	265	29	30	19	20	1.97
30848412--30848679	46	5.8	45	70	15	188	31	28	17	22	1.97
30848465--30848627	47	3.5	47	72	14	165	31	30	17	20	1.96
30848418--30848683	93	2.9	93	90	0	424	30	29	18	22	1.97
30858644--30858819	48	3.7	48	88	0	253	23	18	32	25	1.97
30858645--30858819	96	1.8	96	91	0	287	22	18	32	25	1.97
30858647--30858865	96	2.3	96	83	1	251	25	18	30	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30861690--30861762	35	2.1	35	97	0	137	36	5	17	39	1.73
30863161--30863382	43	5.2	43	97	0	408	10	23	34	31	1.89
30863539--30863697	29	5.5	28	71	10	124	22	20	28	28	1.98
30863536--30863704	58	2.9	58	96	0	304	21	19	30	28	1.98
30865523--30865579	30	1.9	30	85	7	80	43	5	26	24	1.75
30874957--30874994	12	2.9	13	80	11	51	47	0	15	36	1.46
30875007--30875150	52	2.8	49	77	14	121	63	2	4	29	1.26
30875039--30875138	12	8.1	12	71	24	66	65	1	4	30	1.18
30875094--30875126	17	1.9	17	93	0	57	57	0	6	36	1.23
30886431--30886522	39	2.3	39	88	5	132	25	28	22	23	2.00
30886412--30886575	40	4.1	40	80	10	176	24	27	23	25	2.00
30904369--30904417	26	1.9	25	83	4	62	26	12	18	42	1.85
30910567--30910794	49	4.6	49	82	3	285	24	17	28	29	1.98
30910671--30910754	28	3.2	28	64	25	74	23	17	29	28	1.97
30912479--30912759	48	5.8	48	75	5	242	30	18	24	25	1.98
30912471--30912757	98	2.9	97	84	1	369	31	18	24	25	1.98
30914272--30914373	28	3.7	27	73	8	89	26	31	14	27	1.95
30914590--30914624	16	2.2	16	89	0	52	17	20	17	45	1.85
30917977--30918100	43	2.9	42	80	5	133	48	3	19	29	1.64
30921545--30921794	134	1.9	133	85	4	351	36	24	18	21	1.95
30923079--30923147	33	2.1	34	94	2	122	52	2	31	13	1.55
30924330--30924354	11	2.3	11	100	0	50	36	20	16	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30926530--30926856	48	6.8	48	81	4	381	27	19	28	25	1.99
30926589--30926859	144	1.9	145	92	2	456	26	19	28	25	1.99
30936760--30936917	68	2.3	68	77	11	160	20	27	15	35	1.94
30943564--30943796	48	4.9	48	79	4	211	28	21	28	22	1.99
30943621--30943795	96	1.8	96	83	0	233	27	22	28	21	1.99
30951850--30952000	40	3.8	39	87	4	196	23	25	28	22	1.99
30953556--30953604	22	2.3	22	79	13	57	32	6	4	57	1.42
30960694--30960964	48	5.6	48	74	8	221	24	27	21	26	1.99
30960694--30960975	96	2.9	96	84	5	322	25	27	20	26	1.99
30960694--30960961	144	1.9	144	84	3	369	24	27	21	26	1.99
30962834--30962925	40	2.3	40	80	12	109	35	28	17	18	1.93
30963720--30964067	120	2.9	120	98	0	669	38	11	10	39	1.75
30964049--30964086	19	2.0	19	100	0	76	52	10	0	36	1.36
30964271--30964487	66	3.3	66	76	11	194	46	32	0	19	1.57
30964528--30964580	22	2.5	22	78	9	65	54	24	0	20	1.44
30967766--30967819	27	2.0	27	100	0	108	51	11	0	37	1.37
30967774--30967818	14	3.3	14	72	27	51	51	13	0	35	1.41
30967807--30967856	9	5.6	9	88	9	66	42	22	2	34	1.65
30968746--30968886	31	4.5	31	96	0	237	30	25	16	27	1.96
30969106--30969199	25	3.8	25	88	1	136	26	23	25	24	2.00
30970007--30970108	27	3.8	27	74	10	100	25	19	17	37	1.94
30970102--30970488	27	14.3	27	79	6	210	32	8	20	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30970213--30970420	80	2.6	81	87	3	278	28	7	21	41	1.81
30970104--30970559	54	8.4	54	78	5	276	33	8	20	37	1.83
30970411--30970542	27	4.9	27	91	0	201	40	7	21	30	1.81
30970413--30970569	27	5.8	27	89	0	197	38	8	22	31	1.83
30970371--30970569	81	2.5	81	80	0	236	36	8	22	33	1.83
30976560--30976588	14	2.1	14	93	6	51	34	0	10	55	1.34
30976981--30977032	21	2.5	21	87	6	70	26	21	48	3	1.67
30977267--30977345	31	2.5	33	83	8	108	11	8	21	58	1.60
30977287--30977345	31	1.9	31	96	0	109	11	11	23	52	1.71
30977427--30977536	43	2.6	43	86	5	152	24	27	20	27	1.99
30980371--30980422	20	2.6	20	78	0	68	17	32	28	21	1.96
30982145--30982412	48	5.5	48	76	5	209	23	27	21	27	1.99
30982142--30982433	96	3.0	94	82	5	327	25	28	20	26	1.99
30991268--30991318	26	2.0	26	92	3	86	21	29	3	45	1.70
30997543--30997639	40	2.5	40	89	5	144	25	23	27	22	2.00
31001497--31001548	22	2.4	22	93	3	88	57	3	15	23	1.54
31004908--31005011	47	2.2	46	83	6	120	12	28	9	49	1.72
31012132--31012238	47	2.3	47	87	8	146	13	28	9	49	1.72
31012511--31012553	21	2.0	21	100	0	86	23	9	30	37	1.86
31018131--31018198	29	2.3	29	85	5	93	27	30	13	27	1.94
31018020--31018347	174	1.9	174	95	0	593	30	24	14	30	1.95
31018300--31018378	29	2.7	30	82	13	110	30	30	13	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31020214--31020274	25	2.5	25	83	2	79	32	19	19	27	1.96
31022494--31022676	39	4.7	39	88	0	276	24	27	19	28	1.99
31030354--31030561	39	5.3	39	90	0	317	24	27	20	27	1.99
31032748--31032870	42	2.8	44	83	3	151	29	27	18	24	1.98
31032728--31032869	44	3.3	44	77	6	148	28	26	19	26	1.98
31038841--31038943	43	2.4	43	100	0	206	24	16	34	24	1.95
31038926--31039004	29	2.7	29	82	13	108	25	12	31	30	1.93
31039125--31039200	29	2.6	29	100	0	152	26	11	31	30	1.92
31038926--31039313	203	1.9	202	92	2	652	29	13	25	31	1.93
31047103--31047180	29	2.7	28	84	11	104	25	15	30	28	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235