Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  136  of  235  ( 28198 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45998698--45998749
26
2.0
26
84
0
68
55
13
9
21
1.66
46000506--46000613
49
2.2
48
85
1
135
29
25
12
32
1.93
46000524--46000643
49
2.4
49
84
0
141
27
21
16
34
1.95
46001467--46001506
19
2.0
20
90
4
64
45
0
7
47
1.31
46028990--46029100
43
2.5
44
79
2
125
27
24
25
23
2.00
46029558--46029827
68
4.0
68
92
0
434
24
22
23
28
1.99
46030703--46030753
12
4.1
13
80
10
54
25
1
0
72
0.95
46030716--46030787
3
23.3
3
72
18
51
31
2
1
63
1.17
46030711--46030789
12
6.6
12
77
13
83
31
2
1
64
1.15
46030716--46030791
15
5.1
15
75
23
63
32
2
1
63
1.17
46033448--46033475
5
5.6
5
100
0
56
17
0
0
82
0.68
46035695--46035746
26
2.0
26
96
0
95
57
17
7
17
1.62
46037385--46037498
49
2.4
48
80
5
122
27
24
14
34
1.94
46038350--46038389
19
2.0
20
90
4
64
45
0
7
47
1.31
46043995--46044125
45
2.9
45
100
0
262
29
23
12
33
1.92
46046400--46046447
19
2.6
19
90
9
73
37
0
12
50
1.41
46046461--46046553
43
2.2
44
90
3
145
29
6
12
51
1.65
46055706--46055749
19
2.4
18
82
14
54
38
4
11
45
1.61
46055762--46055859
43
2.3
43
87
3
144
31
6
13
48
1.66
46060663--46060696
17
2.1
15
89
10
50
70
2
26
0
1.01
46064126--46064181
29
2.0
28
92
3
94
17
17
26
37
1.93
46076962--46077096
35
3.7
36
77
11
123
34
22
11
31
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46090412--46090458
21
2.2
22
81
7
53
21
10
6
61
1.50
46091026--46091092
34
2.0
34
93
0
116
41
20
23
13
1.88
46093266--46093304
20
2.1
19
90
9
62
53
15
28
2
1.55
46099603--46099638
16
2.2
16
90
0
54
5
22
5
66
1.34
46100689--46100782
40
2.4
39
83
3
109
13
13
37
35
1.85
46102275--46102375
52
1.9
52
97
0
193
36
11
22
28
1.90
46104911--46105027
49
2.4
48
84
2
135
27
19
17
35
1.94
46110785--46110819
18
1.9
18
100
0
70
28
25
17
28
1.97
46111314--46111353
13
3.1
13
88
0
62
40
22
7
30
1.81
46111897--46111937
21
1.9
22
85
5
57
39
2
2
56
1.26
46119993--46120022
13
2.3
13
94
0
51
76
0
0
23
0.78
46124632--46124681
20
2.6
20
84
6
59
40
10
0
50
1.36
46127689--46127733
22
2.0
22
83
8
56
37
4
0
57
1.19
46127700--46127733
16
2.1
16
89
10
52
35
2
0
61
1.11
46128136--46128160
10
2.5
10
100
0
50
8
24
8
60
1.52
46138161--46138218
22
2.6
22
81
7
64
41
17
5
36
1.72
46138197--46138251
18
2.9
19
86
5
85
36
12
10
40
1.79
46146142--46146189
10
4.8
10
81
0
51
27
8
2
62
1.35
46146140--46146189
20
2.5
20
80
6
57
28
8
2
62
1.35
46146887--46146976
43
2.2
39
81
15
94
28
12
3
55
1.52
46147445--46147543
49
2.0
49
98
0
189
45
24
10
20
1.81
46151207--46151396
93
2.1
92
96
2
362
35
12
16
35
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46164829--46164896
15
4.6
14
75
8
64
23
2
0
73
0.97
46167423--46167605
97
1.9
95
87
4
269
28
14
26
30
1.95
46167599--46167643
14
3.2
15
84
12
60
73
0
0
26
0.84
46167599--46167653
14
4.0
14
84
11
53
72
0
1
25
0.94
46170725--46170804
24
3.3
25
74
10
85
33
23
26
16
1.95
46170722--46170826
24
4.3
25
77
8
76
35
22
25
16
1.95
46170863--46170913
26
2.0
27
84
7
70
43
19
15
21
1.88
46179241--46179294
20
2.8
19
78
18
58
7
1
12
77
1.05
46180894--46180955
24
2.5
24
82
10
72
62
0
1
35
1.05
46180980--46181038
22
2.7
22
85
12
70
67
3
0
28
1.06
46182128--46182239
56
2.0
56
94
0
197
24
21
15
39
1.91
46188819--46188846
10
2.8
10
100
0
56
60
0
0
39
0.97
46190826--46190864
18
2.2
18
85
0
51
35
0
5
58
1.20
46200975--46201002
14
2.0
14
100
0
56
42
0
35
21
1.53
46201723--46201809
30
2.8
31
89
3
140
44
2
11
41
1.53
46204623--46204686
34
1.9
33
84
9
85
68
3
3
25
1.18
46206984--46207119
56
2.4
56
91
0
227
29
14
24
31
1.95
46207335--46207365
16
1.9
16
93
0
53
41
6
12
38
1.69
46210821--46210849
11
2.7
11
94
5
51
55
6
0
37
1.27
46212385--46212422
5
8.0
5
88
5
53
81
0
18
0
0.69
46213533--46213751
75
3.0
75
84
5
277
32
21
16
30
1.95
46213745--46213904
73
2.2
72
86
3
223
38
21
14
25
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46213594--46213890
160
1.8
161
88
2
454
34
22
15
27
1.94
46235024--46235338
47
6.7
47
70
15
163
28
20
27
23
1.99
46237203--46237283
27
2.9
28
74
17
80
41
29
3
24
1.72
46237782--46237815
18
1.9
18
88
5
52
32
23
0
44
1.54
46238229--46238261
17
1.9
17
88
11
50
0
21
9
69
1.15
46242784--46242896
57
2.0
57
96
0
208
33
13
20
32
1.91
46244660--46244723
13
4.9
13
79
7
67
31
7
26
34
1.85
46259052--46259085
10
3.3
10
88
8
50
58
17
20
2
1.51
46259494--46259528
18
2.0
17
88
5
52
11
2
14
71
1.25
46262804--46263287
162
2.9
166
79
6
518
27
21
16
34
1.95
46267098--46267247
75
2.0
75
94
0
264
22
18
20
39
1.93
46277663--46277756
40
2.3
41
94
3
163
40
21
15
22
1.91
46279867--46279984
31
3.8
31
92
4
202
26
18
28
26
1.98
46280084--46280210
42
3.0
42
87
3
168
29
14
26
28
1.96
46281225--46281251
6
4.5
6
100
0
54
85
0
14
0
0.61
46281581--46281621
18
2.3
19
87
8
59
43
0
4
51
1.23
46281582--46281626
20
2.3
20
88
3
65
46
0
2
51
1.13
46283032--46283083
16
3.1
16
80
5
50
61
3
0
34
1.14
46285117--46285150
14
2.4
14
90
9
52
35
8
11
44
1.72
46286811--46286950
39
3.6
39
92
0
217
37
22
25
14
1.92
46290069--46290100
11
2.8
12
90
9
50
40
0
31
28
1.57
46291575--46291624
25
2.0
25
100
0
100
52
12
12
24
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46294402--46294460
30
2.0
29
93
3
100
55
13
10
20
1.66
46297734--46297804
31
2.3
31
82
4
81
54
1
1
42
1.17
46298285--46298311
5
5.4
5
100
0
54
18
0
0
81
0.69
46302417--46302473
17
3.5
15
84
15
53
38
10
15
35
1.82
46302417--46302495
36
2.1
38
90
9
126
37
10
16
35
1.82
46302417--46302495
19
4.2
19
90
9
126
37
10
16
35
1.82
46305578--46305602
12
2.1
12
100
0
50
76
0
24
0
0.80
46306816--46307131
158
2.0
158
100
0
632
20
22
25
31
1.98
46308301--46308341
18
2.3
18
87
4
57
85
0
2
12
0.70
46309196--46309564
175
2.1
175
90
1
578
29
18
23
28
1.98
46309196--46309646
44
10.3
44
73
8
330
30
17
23
27
1.97
46309508--46309674
88
1.9
87
82
6
212
35
16
21
26
1.95
46309201--46309674
132
3.6
132
85
2
562
31
17
23
27
1.97
46309636--46310377
206
3.6
206
96
0
1306
31
18
22
28
1.97
46310765--46310862
19
5.2
19
92
7
164
37
10
16
35
1.82
46310755--46310862
36
2.9
35
78
20
112
37
10
15
36
1.82
46315268--46315322
29
1.9
28
82
10
67
50
0
1
47
1.11
46318083--46318111
5
6.0
5
92
8
51
20
0
0
79
0.74
46319434--46319471
13
2.8
14
84
8
51
23
2
5
68
1.23
46321933--46322014
41
2.0
41
85
0
110
25
29
21
23
1.99
46324804--46324840
19
2.0
20
89
10
60
35
0
5
59
1.20
46325865--46325914
20
2.5
20
78
15
57
52
10
10
28
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46327827--46327882
28
2.0
28
100
0
112
57
14
7
21
1.61
46333888--46333980
27
3.5
26
84
7
114
39
23
22
13
1.90
46335311--46335464
26
5.9
26
99
0
299
35
26
7
31
1.83
46343942--46344002
16
3.7
17
70
27
51
36
1
1
60
1.16
46349331--46349368
20
2.0
20
89
5
60
39
15
10
34
1.82
46352370--46352429
17
3.5
17
74
21
63
65
0
1
33
1.03
46352912--46353029
35
3.3
35
96
3
209
36
13
11
38
1.82
46352912--46353037
19
6.9
19
87
10
192
35
14
11
38
1.81
46352915--46353045
17
7.3
19
85
11
134
36
12
12
38
1.81
46353907--46354376
83
5.7
83
94
0
841
25
21
20
31
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235