genome.fa.s4.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  188  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64044445--64044557	48	2.4	48	85	2	149	33	13	22	30	1.92
64057763--64057884	46	2.7	44	84	7	156	27	18	31	22	1.98
64059272--64059497	68	3.3	68	97	0	416	24	28	14	32	1.94
64059320--64059431	38	3.2	38	60	27	91	25	27	15	31	1.95
64059278--64059565	136	2.1	135	85	7	379	24	27	15	32	1.95
64076651--64076833	65	2.7	66	84	7	244	19	30	14	35	1.92
64077480--64078081	302	2.0	302	98	0	1159	39	17	14	29	1.88
64079800--64079856	20	2.8	20	91	0	78	35	17	8	38	1.81
64086375--64086400	12	2.2	12	100	0	52	15	50	23	11	1.76
64087914--64088049	26	5.3	26	87	4	181	27	23	20	28	1.99
64087914--64088049	52	2.7	52	92	5	217	27	23	20	28	1.99
64088099--64088155	20	2.8	20	94	0	96	33	17	10	38	1.84
64088099--64088174	20	3.9	21	88	6	72	34	15	9	40	1.79
64090414--64090488	38	2.0	38	89	0	114	22	22	26	28	1.99
64090488--64090727	43	5.8	42	85	8	330	14	22	31	31	1.94
64090537--64090693	79	2.0	79	92	2	262	14	21	31	32	1.93
64090494--64090714	122	1.8	122	98	0	433	14	22	32	31	1.93
64091043--64091150	45	2.5	42	83	8	119	24	24	25	25	2.00
64092290--64092393	48	2.2	48	81	6	113	30	22	29	17	1.96
64094937--64095009	38	1.9	38	85	0	101	21	23	24	30	1.99
64095002--64095196	43	4.6	43	93	1	320	12	24	32	30	1.93
64095527--64095634	45	2.5	42	82	8	110	23	22	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64108748--64108776	13	2.2	13	100	0	58	51	6	27	13	1.66
64109651--64109759	54	2.0	54	98	0	209	36	15	22	25	1.93
64117756--64118010	55	4.8	53	79	7	243	36	18	24	21	1.95
64117763--64117963	108	1.8	110	88	4	309	34	18	24	22	1.96
64119729--64119769	3	13.7	3	100	0	82	68	0	0	31	0.90
64121070--64121106	7	5.3	7	86	0	56	16	51	0	32	1.45
64123392--64123567	50	3.5	49	85	6	212	26	17	27	28	1.97
64126534--64126584	7	7.3	7	78	8	50	72	1	0	25	0.95
64126542--64126588	11	4.4	11	78	5	51	74	0	0	25	0.82
64126544--64126585	17	2.4	17	96	4	75	76	0	0	23	0.79
64129993--64130029	18	2.1	18	100	0	74	40	5	10	43	1.63
64133925--64133980	15	3.7	15	86	9	87	60	10	16	12	1.58
64136595--64136681	40	2.2	40	93	2	149	44	17	16	21	1.86
64142303--64142394	40	2.3	40	84	5	123	29	14	27	29	1.95
64153198--64153272	25	3.0	25	80	9	89	22	28	22	26	1.99
64158517--64158558	19	2.2	19	100	0	84	33	0	30	35	1.58
64160072--64160141	22	3.2	22	93	4	115	20	12	30	37	1.90
64164065--64164110	24	1.9	24	100	0	92	47	21	13	17	1.81
64164689--64164805	46	2.5	46	82	8	132	23	17	33	24	1.97
64165853--64165877	13	1.9	13	100	0	50	32	28	40	0	1.57
64175618--64175819	40	5.1	40	90	3	277	24	22	27	25	2.00
64179618--64179642	5	5.0	5	100	0	50	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64181463--64181503	21	2.0	21	100	0	82	39	2	14	43	1.59
64181572--64181618	23	2.1	21	81	14	51	25	8	25	40	1.84
64182151--64182227	39	2.0	39	89	0	118	27	25	24	22	2.00
64205548--64205589	15	2.8	15	79	10	50	52	19	11	16	1.74
64214533--64214622	44	2.0	44	97	0	171	37	18	2	41	1.63
64216987--64217110	27	4.6	27	83	1	149	28	16	27	28	1.97
64224700--64224760	9	7.0	9	75	14	56	55	4	1	37	1.31
64224702--64224770	34	2.0	34	100	0	138	57	5	2	33	1.37
64237874--64237922	24	2.0	24	96	0	89	32	18	4	44	1.68
64239788--64239854	31	2.1	34	83	8	86	26	17	8	46	1.78
64247391--64247448	30	1.9	30	92	0	98	41	5	24	29	1.76
64250136--64250194	29	2.0	29	100	0	118	30	6	27	35	1.83
64250142--64250200	29	2.0	29	90	0	91	33	8	25	32	1.86
64250440--64250561	46	2.6	48	84	5	151	27	19	31	22	1.98
64250582--64250707	49	2.6	49	82	5	139	28	18	28	24	1.98
64279821--64279968	48	3.0	48	92	2	224	35	6	27	31	1.83
64280109--64280217	37	2.9	37	93	0	182	22	18	31	27	1.97
64281014--64281056	21	2.0	21	95	0	77	18	30	23	27	1.98
64281035--64281254	47	4.7	47	82	7	261	21	30	19	28	1.98
64281035--64281254	93	2.3	95	83	8	281	21	30	19	28	1.98
64285644--64285815	27	6.4	27	84	0	209	37	18	19	24	1.94
64285643--64285813	81	2.1	81	89	2	254	36	18	19	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64285952--64286003	27	2.0	26	84	3	68	19	23	21	36	1.95
64286160--64286264	33	3.3	34	75	16	109	23	22	25	27	2.00
64288343--64288444	51	2.0	50	96	1	186	16	34	15	32	1.91
64290499--64290646	43	3.4	43	83	2	181	25	17	26	31	1.97
64290499--64290646	44	3.4	43	80	10	169	25	17	26	31	1.97
64290835--64290873	19	2.0	20	85	14	55	46	0	15	38	1.46
64297617--64297775	44	3.7	43	71	12	130	24	16	25	33	1.96
64305784--64305808	13	1.9	13	100	0	50	16	4	16	64	1.44
64306477--64306797	47	6.8	47	72	12	221	28	18	30	23	1.98
64306477--64306748	46	5.7	46	73	12	151	27	18	30	23	1.98
64307953--64307993	22	1.9	22	90	5	66	12	41	26	19	1.87
64309718--64309930	40	5.3	40	77	10	164	33	21	20	24	1.97
64310442--64310510	29	2.4	28	78	21	72	60	2	4	31	1.31
64310624--64310663	7	5.7	7	84	0	53	17	0	30	52	1.45
64310624--64310661	14	2.7	14	95	0	67	18	0	28	52	1.45
64310735--64310842	7	14.4	7	72	12	72	24	0	41	33	1.61
64310732--64310800	22	3.1	23	80	14	81	21	1	37	39	1.63
64310735--64310826	15	6.2	15	77	5	80	23	1	42	32	1.62
64310774--64310859	38	2.3	37	87	2	118	23	1	43	32	1.61
64310955--64310989	15	2.4	15	90	4	54	22	0	37	40	1.55
64311109--64311209	26	3.9	26	88	2	141	45	5	3	44	1.46
64311916--64311970	27	2.0	28	92	3	94	18	36	18	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64311917--64311980	27	2.5	25	85	12	78	17	35	17	29	1.92
64314636--64314682	24	2.0	24	91	0	76	34	19	4	42	1.70
64314917--64314982	29	2.3	29	89	5	98	45	0	0	54	0.99
64314919--64314973	15	3.7	15	71	22	53	47	0	0	52	1.00
64315255--64315404	9	16.7	9	92	0	219	44	23	0	31	1.58
64320439--64320467	14	2.1	14	93	6	51	34	0	10	55	1.34
64321163--64321242	31	2.5	32	89	4	126	12	6	21	60	1.54
64321780--64321906	49	2.6	49	83	0	155	27	18	28	25	1.98
64321642--64321900	142	1.8	138	79	8	299	27	18	27	26	1.98
64324024--64324075	26	2.0	26	100	0	104	30	7	30	30	1.85
64327862--64327915	27	2.0	27	92	0	90	48	25	3	22	1.67
64328385--64328409	13	1.9	13	100	0	50	16	24	40	20	1.91
64337014--64337092	31	2.5	31	89	0	122	27	24	17	30	1.97
64337116--64337207	42	2.2	42	88	0	130	34	21	14	29	1.93
64337352--64337449	26	3.8	26	91	1	162	26	23	23	26	2.00
64338457--64338772	81	3.9	81	92	2	476	29	8	20	40	1.83
64338459--64338786	27	12.2	27	81	4	333	29	8	21	40	1.83
64338764--64338887	27	4.6	27	91	0	203	41	10	19	28	1.84
64338756--64338932	81	2.2	81	78	0	201	37	8	20	33	1.83
64341169--64341280	44	2.5	45	92	4	192	29	28	14	27	1.95
64348777--64348856	15	5.4	15	77	7	83	10	18	13	57	1.64
64348768--64348855	30	3.0	30	80	11	92	10	18	15	55	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64367382--64367424	20	2.2	20	82	0	50	25	13	16	44	1.85
64373062--64373098	19	1.9	19	94	0	65	37	8	29	24	1.84
64375817--64375985	57	3.0	56	84	1	203	37	13	10	37	1.80
64385389--64385635	124	2.0	124	92	1	415	34	17	13	35	1.88
64387979--64388027	22	2.3	21	82	6	55	36	18	22	22	1.95
64390269--64390376	53	2.0	54	90	1	173	34	16	6	42	1.74
64396298--64396375	29	2.7	28	80	11	95	25	14	30	29	1.94
64396328--64396655	174	1.9	174	98	0	629	29	14	24	31	1.94
64404455--64404532	29	2.7	28	84	11	104	25	14	30	29	1.94
64404485--64404812	174	1.9	174	95	0	593	29	14	25	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235