genome.fa.s4.2.7.7.80.10.50.1000.196.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  196  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66698061--66698143	38	2.2	38	88	0	121	33	21	20	24	1.97
66701084--66701205	43	2.8	43	86	2	174	27	31	18	21	1.97
66705203--66705334	40	3.3	40	86	2	176	26	28	21	23	1.99
66705319--66705396	40	1.9	41	82	10	97	26	28	21	23	1.99
66711693--66711762	22	3.2	22	69	15	72	41	22	11	24	1.87
66711680--66711767	44	2.0	44	97	0	167	39	22	12	25	1.89
66713153--66713336	40	4.6	40	83	4	192	25	27	21	25	2.00
66713268--66713345	40	1.9	41	82	10	97	26	28	21	23	1.99
66720150--66720240	19	4.9	19	89	8	152	38	9	15	36	1.81
66720158--66720228	35	2.0	36	94	2	126	39	9	14	36	1.79
66720150--66720263	19	5.8	22	73	21	78	37	8	15	37	1.79
66720527--66720565	18	2.2	18	86	9	53	30	0	0	69	0.89
66730074--66730290	78	2.8	77	88	2	317	31	17	25	25	1.97
66730304--66730503	45	4.5	45	82	3	215	33	13	28	25	1.93
66730321--66730483	89	1.8	89	93	0	281	30	11	29	28	1.92
66730863--66730960	35	2.7	37	87	12	150	37	10	16	35	1.82
66730863--66730953	19	4.9	19	92	8	161	37	10	15	36	1.83
66730863--66730976	19	5.8	22	87	10	96	36	9	15	37	1.81
66731241--66731277	18	2.1	17	90	5	56	32	0	0	67	0.91
66733284--66733320	18	2.1	17	90	5	56	32	0	0	67	0.91
66734102--66734185	44	1.9	44	80	4	98	40	11	22	25	1.88
66734331--66734780	55	8.6	54	73	12	264	34	16	24	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66734492--66734607	47	2.5	47	91	0	178	36	14	24	25	1.93
66744196--66744241	16	2.8	17	83	12	60	76	0	10	13	1.03
66750629--66750796	43	3.9	43	82	6	189	32	26	14	26	1.95
66753169--66753232	31	2.1	31	87	0	92	35	14	23	26	1.93
66755034--66755140	53	2.0	53	83	7	137	13	39	4	42	1.64
66761146--66761188	18	2.5	17	81	7	50	65	6	4	23	1.37
66764789--66764858	27	2.7	25	82	4	77	27	22	27	22	1.99
66775214--66775322	34	2.9	39	75	20	124	24	27	22	24	2.00
66794890--66794920	16	1.9	16	93	0	53	35	22	0	41	1.54
66794887--66794926	20	2.0	20	85	0	53	37	22	0	40	1.54
66801572--66801609	17	2.3	16	91	8	67	28	21	5	44	1.73
66809941--66810285	115	3.0	114	91	1	555	40	15	22	22	1.91
66812062--66812093	15	2.1	15	94	0	55	15	6	9	68	1.36
66815700--66815756	30	1.9	29	85	3	78	42	5	26	26	1.76
66827979--66828382	202	2.0	202	100	0	808	31	24	18	26	1.97
66832543--66832611	36	1.9	36	84	0	93	27	21	17	33	1.96
66832732--66832785	25	2.3	23	84	9	65	55	9	0	35	1.32
66837544--66837662	5	22.8	5	73	19	84	73	0	3	22	1.04
66837544--66837664	11	11.0	11	70	21	53	72	0	3	23	1.04
66837552--66837662	21	5.3	20	77	8	98	72	0	3	22	1.05
66837609--66837662	16	3.6	16	85	11	62	79	0	3	16	0.87
66837573--66837663	46	2.0	44	81	14	105	74	0	3	21	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66843222--66843336	54	2.1	54	91	3	187	31	27	17	23	1.97
66843230--66843367	54	2.7	50	85	8	165	34	24	15	26	1.95
66847988--66848212	40	5.6	40	83	5	258	25	24	27	23	2.00
66847988--66848248	80	3.3	80	83	3	312	25	24	26	23	2.00
66847988--66848248	120	2.2	120	83	6	325	25	24	26	23	2.00
66851008--66851198	47	3.9	46	80	7	175	30	28	15	24	1.96
66850990--66851161	47	3.6	47	80	5	168	31	27	15	24	1.96
66851008--66851322	53	6.2	51	80	9	174	32	27	15	25	1.95
66851115--66851320	53	3.9	54	83	6	235	32	25	15	26	1.95
66873583--66873854	40	6.8	40	92	0	445	22	27	20	29	1.98
66878151--66878238	44	2.0	44	95	0	158	23	19	21	35	1.96
66896144--66896256	57	2.0	57	98	0	217	26	9	19	44	1.82
66897559--66897697	38	3.7	38	83	5	174	22	20	25	30	1.98
66897568--66897726	76	2.1	78	84	4	207	21	20	26	31	1.98
66898221--66898740	260	2.0	261	98	0	1006	26	14	18	40	1.88
66898705--66898795	46	2.0	46	95	0	164	26	7	20	45	1.78
66905337--66905475	38	3.7	38	83	5	174	22	20	25	30	1.98
66905346--66905504	76	2.1	78	84	4	207	21	20	26	31	1.98
66905636--66905775	38	3.7	38	84	9	178	22	21	25	30	1.98
66905638--66905804	76	2.2	78	83	6	216	22	21	25	30	1.99
66905323--66905921	300	2.0	300	94	0	1054	26	18	25	30	1.98
66912293--66912369	37	2.1	36	90	2	118	14	42	9	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66920216--66921093	435	2.0	436	87	2	1244	36	16	12	33	1.87
66923067--66923148	23	3.6	23	80	15	107	35	19	23	21	1.96
66923065--66923158	46	2.1	46	92	6	156	34	19	24	22	1.97
66923065--66923158	45	2.1	45	92	6	154	34	19	24	22	1.97
66929084--66929147	23	3.0	22	78	15	62	25	7	1	65	1.28
66936634--66936697	31	2.1	31	90	0	101	25	23	15	35	1.94
66936891--66937198	24	13.0	24	90	3	464	26	20	23	29	1.99
66936891--66937198	47	6.5	48	90	3	464	26	20	23	29	1.99
66936891--66937198	71	4.3	71	96	1	546	26	20	23	29	1.99
66937248--66937314	20	3.3	20	89	0	98	32	20	13	32	1.92
66938553--66938632	27	3.0	27	87	3	108	21	26	21	31	1.98
66938698--66938783	27	3.1	27	79	14	86	37	10	13	38	1.80
66938781--66938943	27	6.0	27	77	8	161	31	9	19	39	1.84
66938788--66938965	54	3.3	54	82	5	184	29	8	19	41	1.82
66938786--66938951	81	2.0	81	90	2	262	30	9	21	38	1.85
66938958--66939187	27	8.5	27	90	0	280	37	8	24	29	1.85
66938786--66939005	81	2.7	81	83	4	196	32	9	20	38	1.84
66939201--66939290	27	3.3	27	85	3	119	32	11	16	40	1.84
66939201--66939305	27	3.9	27	78	9	90	34	10	17	38	1.84
66954683--66954742	30	2.0	30	86	0	84	28	26	5	40	1.77
66964193--66964226	15	2.2	16	89	5	52	32	50	0	17	1.47
66974189--66974260	37	1.9	37	100	0	144	33	16	13	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66975679--66975719	13	3.4	12	81	18	50	0	26	2	70	0.99
66975784--66975841	17	3.3	18	73	9	57	51	6	0	41	1.28
66976266--66976305	21	2.0	20	85	5	53	37	7	10	45	1.66
66979185--66979227	20	2.2	20	91	0	68	25	30	23	20	1.99
66987299--66987344	23	2.0	23	83	12	58	13	19	26	41	1.88
66989560--66989674	43	2.7	43	83	4	135	33	24	16	26	1.96
66991111--66991144	16	2.1	16	89	10	52	41	0	11	47	1.40
66999258--66999314	26	2.2	26	80	3	60	28	19	19	33	1.96
67002796--67002923	63	2.0	63	98	0	247	29	18	30	21	1.97
67007138--67007244	44	2.5	44	86	7	139	22	18	24	34	1.96
67007147--67007287	43	3.3	42	80	11	135	24	19	24	32	1.97
67007492--67007529	17	2.2	17	95	0	67	42	2	23	31	1.68
67018632--67018687	26	2.2	26	100	0	112	26	0	16	57	1.39
67036681--67036767	44	2.0	44	100	0	174	42	16	20	20	1.89
67038297--67038547	126	2.0	126	98	0	484	27	20	15	37	1.92
67039717--67039901	40	4.7	40	81	5	178	27	28	20	24	1.99
67039684--67039901	40	5.5	39	77	7	165	25	27	20	25	1.99
67047278--67047316	17	2.3	17	95	0	69	58	12	5	23	1.54
67056459--67056570	25	4.5	25	86	0	125	31	20	22	25	1.98
67056459--67056570	50	2.2	50	83	0	143	31	20	22	25	1.98
67060487--67060638	28	5.5	28	83	4	155	28	19	20	32	1.97
67060503--67060639	55	2.5	55	87	2	184	27	21	19	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67060503--67060639	28	4.9	28	87	1	177	27	21	19	31	1.97
67071321--67071521	42	4.6	42	71	14	122	28	18	22	29	1.98
67074356--67074521	43	3.9	42	74	9	140	31	24	15	27	1.96
67074997--67075062	29	2.3	29	81	5	71	30	25	1	42	1.64
67075075--67075112	19	2.0	19	100	0	76	52	15	5	26	1.64
67087686--67087723	15	2.4	16	82	8	51	44	2	0	52	1.14
67092451--67092488	15	2.4	16	82	8	51	44	2	0	52	1.14
67108862--67109274	203	2.0	202	81	6	471	29	18	9	42	1.82
67124944--67125046	43	2.4	44	87	7	142	24	19	25	31	1.98
67126270--67126306	17	2.2	17	95	0	65	32	24	18	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235