genome.fa.s4.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  140  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47094209--47094533	163	2.0	163	100	0	650	30	16	24	29	1.96
47094447--47094601	45	3.5	45	82	7	181	32	13	28	25	1.94
47099741--47099849	51	2.1	51	84	3	139	31	32	18	18	1.95
47102877--47102913	19	1.9	19	88	0	56	37	16	8	37	1.78
47109875--47109918	23	2.0	23	86	4	63	22	4	6	65	1.35
47113512--47113549	19	2.0	19	100	0	76	21	36	0	42	1.53
47114410--47114478	17	4.1	17	77	17	72	53	0	1	44	1.09
47115876--47115920	15	2.9	15	90	6	63	64	2	8	24	1.34
47115888--47116004	29	4.0	29	66	8	76	60	0	10	28	1.35
47119121--47119345	39	5.7	39	83	1	243	31	4	20	44	1.70
47122394--47122461	30	2.3	30	84	5	84	48	5	17	27	1.70
47124883--47125100	46	4.7	46	93	1	348	38	14	24	22	1.92
47132137--47132169	12	2.8	12	95	0	57	63	0	9	27	1.24
47133083--47133142	10	6.0	10	84	11	79	68	1	8	21	1.25
47137588--47137659	15	4.7	15	73	15	58	50	0	1	48	1.09
47137604--47137640	19	1.9	19	88	0	56	48	0	0	51	1.00
47137602--47137668	34	2.1	31	86	8	89	50	0	1	47	1.10
47138075--47138125	20	2.6	21	78	12	63	45	15	5	33	1.71
47138104--47138142	14	2.8	14	84	0	51	33	15	7	43	1.75
47138481--47138521	20	2.0	20	85	9	55	46	4	0	48	1.23
47142052--47142091	14	2.7	15	92	7	57	47	5	15	32	1.66
47142059--47142091	14	2.4	14	100	0	66	48	6	15	30	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47148479--47148536	27	2.2	26	90	3	89	27	24	17	29	1.96
47150766--47150840	37	2.0	38	94	2	134	21	30	22	25	1.99
47167088--47167159	36	2.0	36	97	0	135	33	12	19	34	1.89
47174387--47174423	5	7.6	5	93	6	67	81	0	0	18	0.70
47179850--47179901	20	2.5	20	81	3	59	55	9	9	25	1.62
47190340--47190463	37	3.2	39	77	10	128	32	25	16	25	1.96
47191357--47191403	20	2.4	20	78	3	51	2	29	4	63	1.25
47191437--47191554	5	23.8	5	98	1	229	59	0	0	40	0.97
47197645--47197772	38	3.3	38	84	2	157	34	25	18	21	1.96
47197682--47197785	38	2.7	38	81	8	122	29	23	23	24	1.99
47199789--47199900	40	2.9	39	73	16	108	36	23	16	24	1.94
47200783--47200826	18	2.5	18	86	13	65	43	0	0	56	0.99
47200788--47200836	10	5.1	10	76	14	50	46	2	0	51	1.12
47203991--47204026	18	2.0	18	100	0	72	22	5	27	44	1.75
47206648--47206677	14	2.1	14	93	0	51	30	0	10	60	1.30
47212926--47213059	69	1.9	70	90	1	216	32	13	17	36	1.89
47214121--47214382	45	5.9	45	88	2	352	24	21	29	24	1.99
47217168--47217244	34	2.3	33	91	6	113	46	0	5	48	1.24
47217178--47217247	34	2.1	34	100	0	140	44	0	5	50	1.26
47217225--47217274	24	2.2	23	85	7	66	36	0	2	62	1.07
47221327--47221390	32	2.0	31	96	3	119	25	15	42	15	1.86
47230145--47230174	15	2.0	15	93	0	51	70	0	13	16	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47231072--47231130	30	2.0	30	100	0	118	45	3	13	37	1.60
47235096--47235246	52	2.9	52	80	6	171	33	25	13	28	1.93
47237277--47237562	131	2.2	131	96	0	518	25	18	18	37	1.93
47239109--47239154	19	2.4	19	85	7	58	19	23	13	43	1.86
47243004--47243048	22	2.0	24	83	16	60	33	20	8	37	1.83
47242984--47243107	64	1.9	64	90	0	194	30	17	13	37	1.89
47243217--47243969	89	8.6	87	76	5	653	32	18	24	24	1.97
47243217--47243948	176	4.2	176	88	1	1029	32	18	25	23	1.97
47243217--47243948	350	2.1	353	87	1	1060	32	18	25	23	1.97
47246642--47246750	55	2.0	55	94	0	191	26	19	24	29	1.98
47246700--47246946	131	1.9	131	93	1	424	26	19	19	34	1.96
47249981--47250022	16	2.6	16	88	7	59	42	21	23	11	1.86
47250411--47250554	54	2.7	54	93	2	245	18	25	22	34	1.96
47250414--47250572	27	5.9	27	82	11	184	19	25	21	33	1.97
47250414--47250572	81	2.0	80	84	8	207	19	25	21	33	1.97
47254227--47254270	6	6.7	6	80	19	52	15	0	4	79	0.89
47255017--47255050	17	2.0	17	94	0	59	44	50	0	5	1.26
47256784--47256808	9	2.8	9	100	0	50	12	0	48	40	1.40
47259692--47259722	15	2.1	15	100	0	62	35	19	0	45	1.51
47261967--47261993	11	2.5	11	100	0	54	22	7	18	51	1.70
47263395--47263588	92	2.1	92	88	5	286	44	4	4	46	1.41
47263566--47263664	52	2.0	52	80	11	118	45	6	2	46	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47263621--47263654	17	2.0	17	94	0	59	44	5	0	50	1.26
47263626--47263673	17	3.0	16	79	17	55	45	6	2	45	1.40
47263718--47263769	15	3.6	15	80	12	56	44	0	1	53	1.11
47269242--47269294	17	3.1	16	86	13	70	64	1	0	33	1.05
47269223--47269290	19	3.7	18	79	15	68	67	1	1	29	1.08
47282986--47283060	22	3.3	23	74	17	68	60	1	2	36	1.20
47282953--47283019	28	2.4	27	75	20	68	61	1	0	37	1.05
47283978--47284053	23	3.3	22	75	12	73	22	17	7	52	1.70
47294969--47295143	96	1.8	96	87	0	260	37	17	32	12	1.87
47296748--47296793	22	2.1	22	91	0	74	17	28	13	41	1.86
47300317--47300569	137	1.8	137	82	1	319	22	16	23	38	1.93
47300126--47300589	69	6.8	69	75	1	295	23	15	21	39	1.92
47313665--47313691	14	1.9	14	100	0	54	37	0	3	59	1.15
47315360--47315710	117	3.0	117	99	0	684	35	11	26	26	1.91
47315848--47316200	174	2.0	174	96	0	652	37	13	29	19	1.89
47324408--47324441	10	3.4	10	88	11	52	38	0	0	61	0.96
47324461--47324487	14	1.9	14	100	0	54	51	0	0	48	1.00
47324647--47324936	99	2.9	99	99	0	571	41	13	12	32	1.82
47325753--47325783	16	1.9	16	93	0	53	54	6	6	32	1.51
47326446--47326497	25	2.1	25	100	0	104	34	0	3	61	1.14
47326661--47326708	21	2.2	21	82	10	53	29	0	20	50	1.49
47334414--47334477	32	2.0	31	90	3	101	26	29	15	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47340847--47340931	36	2.4	36	79	0	98	28	15	20	36	1.92
47340927--47341024	29	3.4	29	84	7	110	33	24	21	20	1.97
47340957--47341090	70	1.9	70	84	6	182	30	25	23	20	1.99
47342983--47343089	24	4.2	26	74	10	80	15	26	23	34	1.95
47343902--47343927	13	2.0	13	100	0	52	53	15	0	30	1.42
47348032--47348071	21	1.9	21	85	10	55	45	0	5	50	1.23
47349307--47349346	21	1.9	21	84	0	53	45	5	12	37	1.64
47351224--47351315	46	2.0	46	97	0	175	28	6	16	48	1.70
47351518--47351568	24	2.1	24	96	0	93	27	7	21	43	1.80
47351727--47351772	17	2.7	18	77	12	53	34	0	10	54	1.36
47354053--47354162	57	1.9	57	90	0	175	29	13	14	42	1.84
47355698--47355819	59	2.1	59	98	0	235	33	8	18	40	1.80
47357265--47357294	13	2.3	13	94	0	51	80	16	0	3	0.85
47359563--47360217	131	5.0	129	77	8	491	29	19	17	34	1.94
47372830--47372866	19	2.0	19	85	15	51	45	0	0	54	1.00
47373031--47373121	45	2.0	45	85	2	121	37	28	6	27	1.82
47373102--47373154	16	3.2	16	94	5	97	37	37	0	24	1.56
47373346--47373389	22	1.9	24	81	9	56	45	0	4	50	1.22
47373501--47373545	19	2.4	19	81	3	56	26	2	4	66	1.22
47374241--47374287	24	2.0	24	87	8	69	42	0	0	57	0.98
47374304--47374370	30	2.2	31	91	5	118	43	4	26	25	1.74
47377027--47377059	7	4.7	7	92	0	57	27	3	12	57	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47377531--47377621	30	3.1	29	80	4	103	30	41	16	10	1.83
47377958--47378005	21	2.3	21	82	7	62	29	39	22	8	1.83
47378139--47378264	54	2.3	55	82	8	141	43	2	6	47	1.41
47381265--47381634	125	3.0	126	90	1	566	27	16	15	39	1.89
47384530--47384606	38	2.0	38	94	0	136	19	28	11	40	1.87
47384538--47384605	22	3.4	22	64	29	60	19	29	8	42	1.81
47392706--47392752	20	2.3	20	100	0	94	25	38	27	8	1.85
47395949--47396003	20	2.8	19	78	8	56	70	3	1	23	1.12
47395949--47395997	20	2.5	20	80	12	64	75	2	2	20	1.00
47403777--47403885	37	2.9	37	93	0	173	26	32	18	22	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235