genome.fa.s4.2.7.7.80.10.50.1000.201.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  201  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68396555--68396596	21	2.0	20	86	4	57	16	26	38	19	1.92
68397185--68397237	6	8.7	6	78	12	54	77	5	0	16	0.96
68403401--68403444	22	1.9	24	90	9	74	25	20	0	54	1.45
68404391--68404424	17	1.9	18	88	5	52	38	8	0	52	1.33
68404459--68404514	11	4.7	12	76	22	55	58	1	0	39	1.08
68407578--68407689	56	2.0	56	87	0	161	46	14	24	15	1.82
68410393--68410457	31	2.1	31	100	0	130	47	3	15	33	1.61
68412151--68412205	24	2.2	25	84	12	69	56	7	1	34	1.38
68414098--68414346	45	5.5	45	72	10	204	28	20	20	31	1.97
68414005--68414306	90	3.3	89	72	15	287	27	19	20	32	1.97
68414140--68414394	135	1.9	133	82	3	323	29	20	19	30	1.97
68425749--68426069	128	2.5	127	87	1	444	37	20	16	25	1.94
68426731--68426784	24	2.2	24	83	9	65	55	7	1	35	1.39
68433103--68433309	45	4.6	45	75	1	157	31	16	23	28	1.96
68433577--68433648	31	2.3	32	85	2	101	30	13	11	44	1.79
68446239--68446266	14	2.0	14	100	0	56	50	14	0	35	1.43
68453297--68453355	31	1.9	31	86	6	84	30	11	18	38	1.87
68454834--68454887	21	2.6	21	90	0	90	14	18	35	31	1.91
68466074--68466803	365	2.0	364	99	0	1451	30	18	16	34	1.94
68468603--68468644	12	3.6	12	77	6	50	45	2	14	38	1.58
68474474--68474709	94	2.5	93	81	8	280	28	25	15	30	1.96
68483026--68483066	21	2.0	21	95	0	73	9	41	26	21	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68485582--68485663	40	2.0	40	92	0	137	29	15	12	42	1.83
68489387--68489588	52	3.9	52	81	4	212	30	25	17	25	1.97
68489387--68489588	104	1.9	103	81	8	239	30	25	17	25	1.97
68491626--68491770	57	2.5	57	78	6	150	31	16	20	31	1.94
68500669--68500699	15	2.1	14	94	5	53	54	6	3	35	1.42
68500686--68500754	21	3.4	20	71	16	70	55	7	1	36	1.37
68518895--68519002	26	4.2	26	91	0	171	32	7	24	36	1.83
68520735--68520788	22	2.5	22	100	0	108	14	7	53	24	1.66
68521738--68521776	21	1.9	20	89	5	60	64	10	2	23	1.37
68521820--68521867	24	1.9	26	84	16	66	58	6	0	35	1.23
68522310--68522336	3	9.0	3	100	0	54	66	0	0	33	0.92
68525338--68525381	18	2.4	18	80	3	52	47	11	15	25	1.79
68532893--68532936	24	2.0	24	82	13	58	13	27	34	25	1.93
68549632--68550052	177	2.4	178	89	4	638	31	17	24	26	1.97
68549751--68550035	43	6.5	43	69	18	167	29	17	25	28	1.97
68549751--68550046	45	6.7	43	69	15	185	29	16	26	27	1.97
68555911--68555973	10	5.9	10	78	14	72	57	3	1	38	1.24
68578373--68578725	47	7.4	47	94	2	589	32	7	29	29	1.86
68578373--68578725	96	3.7	96	94	2	606	32	7	29	29	1.86
68584117--68584243	28	4.5	28	90	0	191	29	11	27	30	1.92
68584964--68585267	23	13.0	23	73	13	228	28	12	17	41	1.86
68584964--68585319	46	7.6	47	76	11	320	28	12	18	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68584984--68585319	94	3.6	93	94	0	555	28	12	18	40	1.87
68585012--68585285	23	11.7	23	75	11	229	27	12	18	41	1.86
68594117--68594174	23	2.5	23	94	0	98	36	25	10	27	1.89
68597213--68597274	29	2.1	29	96	0	115	54	22	3	19	1.58
68598278--68598321	22	2.0	22	100	0	88	40	22	18	18	1.91
68599986--68600049	26	2.5	26	92	5	103	21	3	7	67	1.31
68600003--68600059	26	2.4	23	83	16	73	21	3	8	66	1.34
68605479--68605522	17	2.5	17	82	10	54	31	15	2	50	1.57
68616720--68616809	41	2.2	41	97	0	171	20	23	6	50	1.71
68621043--68621529	41	11.9	41	77	8	413	36	22	18	21	1.95
68621046--68621529	82	5.9	82	81	4	478	36	22	18	21	1.95
68621019--68621513	123	4.0	123	83	5	545	37	22	17	22	1.94
68624525--68624611	36	2.5	36	88	5	126	13	11	37	36	1.81
68638423--68638448	10	2.6	10	100	0	52	61	7	0	30	1.24
68640927--68641168	50	4.7	50	81	3	243	27	21	27	23	1.99
68647702--68647751	25	2.0	25	84	7	66	28	20	20	32	1.97
68654652--68654764	50	2.3	50	86	6	165	23	23	22	30	1.99
68654652--68654764	25	4.5	25	74	12	115	23	23	22	30	1.99
68654526--68655006	248	1.9	248	90	1	768	26	19	22	31	1.98
68654902--68655015	50	2.3	50	85	0	156	22	22	23	30	1.99
68654902--68655015	25	4.6	25	76	6	97	22	22	23	30	1.99
68656146--68656214	30	2.3	30	92	0	120	17	21	37	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68659465--68659489	10	2.5	10	100	0	50	72	8	0	20	1.10
68667199--68667383	40	4.7	40	80	10	193	23	21	28	26	1.99
68667252--68667416	79	2.1	79	80	6	183	25	20	28	25	1.99
68675125--68675270	40	3.6	41	82	9	176	23	22	28	25	2.00
68675126--68675289	40	4.1	40	80	9	120	25	22	28	23	1.99
68675125--68675303	80	2.2	80	79	6	177	25	21	27	24	1.99
68675697--68676069	200	1.9	200	100	0	746	24	16	24	34	1.95
68679413--68679501	29	3.3	29	70	20	102	37	5	14	42	1.69
68679448--68679572	17	7.4	17	66	21	66	39	5	13	41	1.68
68679488--68679565	19	4.4	19	71	21	62	39	6	11	42	1.67
68679405--68679591	51	3.7	51	89	0	293	38	5	12	42	1.67
68688944--68689000	30	1.9	30	92	0	96	33	10	24	31	1.89
68691314--68691423	42	2.6	43	81	8	127	28	20	23	28	1.99
68704727--68705451	47	15.4	47	91	1	1056	27	29	8	33	1.87
68709588--68709644	25	2.3	25	78	6	62	42	10	15	31	1.81
68717877--68718271	33	12.0	33	83	1	481	35	20	9	34	1.85
68717878--68718270	66	6.0	66	90	2	594	35	20	9	34	1.85
68717885--68718270	131	2.9	132	89	2	589	35	20	9	34	1.84
68730483--68730603	49	2.5	49	87	2	163	28	19	28	23	1.98
68732579--68732624	23	2.0	23	100	0	92	39	4	13	43	1.63
68732824--68733075	33	7.7	32	86	9	167	36	9	21	32	1.86
68732874--68733071	66	3.0	66	93	1	344	38	8	21	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68732848--68733071	99	2.3	99	89	3	353	36	8	21	32	1.85
68740475--68740687	33	6.5	32	80	8	83	36	9	22	31	1.87
68740525--68740677	33	4.6	33	90	0	252	38	8	20	32	1.83
68747273--68747448	56	3.1	56	97	0	334	46	9	22	22	1.80
68748576--68748800	79	2.8	80	82	9	280	25	22	27	25	2.00
68748576--68748800	40	5.7	40	84	7	280	25	22	27	25	2.00
68749986--68750224	123	1.9	123	99	0	469	26	12	18	41	1.87
68751143--68751173	15	2.1	15	100	0	62	19	12	29	38	1.89
68750727--68751597	439	2.0	442	97	1	1658	23	19	19	36	1.94
68752119--68752157	12	3.2	12	92	7	62	76	7	2	12	1.09
68753180--68753227	15	3.3	15	77	11	55	77	0	16	6	0.97
68753185--68753227	21	2.0	21	86	0	59	76	0	16	6	0.99
68761508--68761951	222	2.0	222	95	0	807	36	16	15	31	1.90
68766715--68767053	171	2.0	171	95	0	615	27	23	17	31	1.97
68768604--68768781	27	6.6	27	84	3	205	29	28	15	26	1.96
68768625--68768780	82	1.9	81	88	3	233	29	28	15	26	1.96
68771969--68772123	72	2.1	72	95	1	283	56	5	17	21	1.60
68772326--68772383	19	3.1	19	85	9	66	58	8	0	32	1.28
68772326--68772378	20	2.7	20	85	11	65	60	9	0	30	1.28
68772317--68772383	19	3.7	18	75	21	59	59	8	0	31	1.28
68781931--68781975	24	1.9	23	90	4	72	8	22	24	44	1.81
68782674--68782706	17	2.0	17	94	5	59	36	15	0	48	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68783002--68783264	46	5.7	46	91	1	368	21	23	13	41	1.88
68783974--68783999	3	8.7	3	100	0	52	0	65	0	34	0.93
68785387--68785454	30	2.3	30	84	5	84	27	19	5	47	1.72
68790523--68790723	45	4.5	44	77	7	149	23	22	16	37	1.93
68790567--68790765	90	2.2	90	84	3	258	23	21	14	41	1.89
68790568--68790784	45	4.8	45	81	5	219	21	21	14	42	1.88
68794837--68794883	19	2.4	19	83	13	60	63	2	2	31	1.18
68804446--68804480	10	3.6	10	84	7	54	28	0	2	68	1.04
68804446--68804485	19	2.2	18	95	4	71	30	0	2	67	1.04
68804473--68804508	18	1.9	19	88	5	56	47	0	2	50	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235