Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  112  of  235  ( 28198 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38441387--38441429
23
1.9
23
85
4
61
58
2
9
30
1.42
38446158--38446208
21
2.3
22
80
6
59
70
3
1
23
1.14
38454954--38455057
26
4.0
26
76
7
104
23
16
26
33
1.95
38454955--38455056
52
2.0
52
86
3
143
22
16
26
34
1.95
38456654--38456916
40
6.6
40
87
3
309
26
28
20
23
1.99
38461338--38462863
762
2.0
762
97
0
2908
28
26
19
25
1.99
38465363--38465625
40
6.6
39
86
4
278
25
27
21
25
1.99
38465363--38465625
120
2.2
119
82
4
307
25
27
21
25
1.99
38465557--38465634
40
1.9
41
82
10
97
26
28
20
24
1.99
38474685--38474718
17
2.0
16
94
5
50
0
44
0
52
1.01
38488130--38488391
131
2.0
131
98
0
506
24
20
19
35
1.96
38489878--38489929
14
3.7
13
75
14
50
36
1
0
61
1.07
38490169--38490206
19
2.0
20
89
5
60
36
10
7
44
1.68
38493822--38493859
14
2.7
14
91
0
58
39
7
23
28
1.83
38502969--38503218
73
3.4
73
97
0
455
41
3
2
53
1.30
38503037--38503097
29
2.0
30
87
6
88
39
3
0
57
1.15
38503042--38503212
6
28.3
6
68
15
79
43
2
1
53
1.21
38503110--38503170
29
2.0
30
84
6
79
40
1
0
57
1.08
38503042--38503212
11
16.2
11
68
29
83
43
2
1
53
1.21
38503017--38503198
25
7.4
25
69
14
119
42
3
2
52
1.30
38503188--38503304
62
1.9
59
86
5
162
42
3
4
49
1.39
38505069--38505165
40
2.4
40
83
8
126
28
27
14
28
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38508468--38508505
17
2.2
17
90
0
58
63
7
7
21
1.47
38510096--38510289
96
2.0
96
100
0
388
27
18
20
33
1.96
38520949--38521006
30
1.9
30
85
0
80
22
36
27
13
1.92
38521341--38521415
34
2.2
34
97
2
141
28
6
12
53
1.63
38524061--38524586
262
2.0
262
95
0
944
30
12
21
35
1.90
38525157--38525284
64
2.0
64
92
3
213
30
25
16
28
1.96
38526361--38526418
16
3.5
16
88
4
71
17
5
0
77
0.94
38526435--38526464
11
2.7
11
89
0
51
16
6
3
73
1.18
38528131--38528181
18
2.9
17
77
8
57
15
3
7
72
1.23
38529142--38529171
11
2.9
10
90
9
51
80
0
10
10
0.92
38536082--38536176
47
2.0
46
82
6
111
34
17
20
27
1.95
38539719--38539804
28
2.8
32
75
17
90
29
27
18
24
1.98
38539837--38539965
59
2.2
59
88
0
186
37
37
11
13
1.81
38540181--38540353
27
6.4
27
84
0
202
24
20
20
34
1.96
38540184--38540354
54
3.2
53
85
3
225
24
19
20
35
1.96
38540196--38540353
81
2.0
81
88
0
235
23
20
22
33
1.97
38543914--38543984
33
2.2
33
84
0
88
29
23
19
26
1.98
38544305--38544392
27
3.3
27
78
0
86
25
19
20
35
1.96
38546678--38546892
21
10.3
21
74
3
148
18
18
16
47
1.83
38546677--38546873
42
4.7
42
82
2
216
18
17
15
47
1.83
38546751--38546896
63
2.4
63
81
7
167
17
18
17
45
1.85
38546677--38546873
84
2.3
84
85
1
261
18
17
15
47
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38555784--38555855
35
2.1
35
89
0
108
37
11
25
26
1.89
38561726--38561783
28
2.1
28
100
0
116
55
17
3
24
1.57
38561727--38561774
15
3.3
15
71
11
55
52
18
2
27
1.57
38563328--38563400
9
7.8
9
70
19
51
68
4
1
26
1.15
38563294--38563431
28
4.9
28
71
18
99
63
3
2
30
1.23
38563368--38563437
19
3.6
19
80
3
77
65
2
2
28
1.21
38563350--38563437
10
9.2
10
70
17
53
63
4
2
29
1.26
38563299--38563437
29
4.9
28
70
16
99
62
3
2
31
1.24
38563618--38563858
9
26.0
9
66
16
75
32
3
1
61
1.23
38563700--38563762
29
2.2
28
83
8
74
28
3
3
65
1.24
38563747--38563826
32
2.6
31
78
5
90
40
1
0
58
1.06
38563996--38564154
84
1.9
84
84
0
210
37
5
15
42
1.69
38564353--38564488
62
2.2
63
81
2
157
50
3
9
36
1.53
38565031--38565074
15
2.9
15
86
6
61
56
0
4
38
1.20
38567710--38567752
2
21.5
2
100
0
86
51
0
48
0
1.00
38575032--38575086
28
2.0
28
96
0
101
32
30
14
21
1.93
38576108--38576184
37
2.1
37
97
0
145
15
38
2
42
1.61
38580557--38580594
18
2.1
19
90
5
60
34
5
0
60
1.19
38584253--38584285
16
2.1
16
94
0
57
27
0
0
72
0.85
38585782--38585808
14
1.9
14
100
0
54
22
0
0
77
0.76
38588691--38588724
4
8.2
4
87
6
50
73
0
2
23
0.97
38593695--38593729
18
2.0
18
88
5
54
17
40
25
17
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38595065--38595184
60
2.0
59
91
1
195
31
10
15
43
1.79
38615100--38615219
60
2.0
59
91
1
195
31
10
15
43
1.79
38619883--38619971
43
2.1
42
91
2
142
24
17
30
26
1.98
38620538--38620570
16
1.9
18
88
11
52
18
12
18
51
1.76
38623637--38623667
11
2.8
11
100
0
62
48
16
25
9
1.76
38629479--38629512
16
2.0
18
88
11
54
17
11
17
52
1.73
38649743--38649807
34
2.0
34
84
6
89
30
26
16
26
1.97
38651653--38651708
26
2.2
26
96
0
103
33
28
7
30
1.84
38662107--38662223
58
2.0
58
98
0
225
49
14
20
15
1.79
38668813--38668916
52
2.0
52
96
0
190
29
20
15
34
1.93
38674888--38674928
16
2.5
17
80
8
57
63
4
2
29
1.28
38677563--38677639
22
3.4
22
81
12
93
35
16
23
24
1.95
38677562--38677651
23
4.0
23
75
5
85
33
17
22
26
1.96
38678243--38678388
73
2.0
73
100
0
292
47
20
5
26
1.71
38678247--38678404
73
2.2
73
95
2
282
49
20
4
25
1.67
38680979--38681028
10
5.0
10
81
13
59
68
2
8
22
1.26
38685202--38685245
21
2.1
21
87
8
63
61
4
4
29
1.36
38685212--38685291
32
2.5
30
82
10
79
60
3
2
33
1.28
38695009--38695116
44
2.4
44
85
3
135
30
23
12
33
1.92
38700096--38700224
50
2.5
51
90
5
199
35
16
22
25
1.94
38700200--38700317
31
3.8
31
93
4
202
27
18
27
25
1.98
38700336--38700499
47
3.6
46
86
5
167
28
14
26
29
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38700386--38700526
42
3.3
42
87
6
167
30
13
26
29
1.94
38702297--38702399
51
2.0
51
92
0
170
33
14
29
23
1.94
38710307--38710341
18
1.9
18
88
0
52
48
11
20
20
1.79
38712566--38712597
7
4.6
7
92
0
55
40
43
0
15
1.47
38713194--38713243
24
2.1
24
92
0
82
46
24
16
14
1.83
38718341--38718550
74
2.9
74
96
2
381
46
3
3
46
1.37
38718717--38718751
18
2.0
17
88
5
52
45
0
0
54
0.99
38718893--38719001
44
2.6
40
76
17
121
34
28
5
31
1.80
38718916--38719006
45
2.0
45
87
2
130
38
28
5
27
1.79
38718987--38719039
16
3.2
16
94
5
97
37
37
0
24
1.56
38728093--38728175
31
2.6
31
82
3
94
61
19
2
16
1.45
38734032--38734159
9
13.6
9
76
9
121
31
0
21
46
1.57
38734032--38734159
57
2.2
57
85
0
175
31
0
21
46
1.57
38736325--38736382
5
10.8
5
80
12
62
43
0
1
55
1.10
38736326--38736383
8
6.7
9
74
21
61
43
0
1
55
1.10
38736328--38736383
12
4.5
12
81
16
69
42
0
1
55
1.10
38736734--38736772
18
2.1
19
90
4
62
41
0
10
48
1.37
38737012--38737146
39
3.4
39
74
6
112
23
20
28
28
1.99
38737259--38737307
13
3.8
12
82
12
53
48
0
24
26
1.51
38740013--38740062
11
4.4
11
75
9
55
40
12
8
40
1.72
38740441--38740476
18
1.9
19
88
5
56
22
25
2
50
1.63
38741060--38741160
40
2.5
41
82
6
118
25
19
14
39
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38742226--38742312
41
2.2
40
83
10
106
42
24
3
29
1.71
38742485--38742551
28
2.4
28
85
7
82
25
0
23
50
1.49
38742489--38742551
21
3.0
21
76
2
54
25
0
23
50
1.49
38742841--38743067
41
5.6
40
81
7
253
25
18
24
32
1.97
38742841--38743051
81
2.6
80
81
9
223
24
16
24
34
1.96
38746550--38746662
55
2.1
55
94
0
199
22
13
26
38
1.91
38753729--38753782
27
2.0
27
85
0
72
38
14
7
38
1.75
38781387--38781421
9
3.9
9
96
0
61
45
8
2
42
1.49
38782797--38782846
25
2.0
25
100
0
100
40
0
12
48
1.40
38784356--38784404
23
2.1
23
85
7
64
57
2
6
34
1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235