genome.fa.s4.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  151  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50717312--50717534	39	5.7	40	86	7	273	25	22	27	24	2.00
50717312--50717534	79	2.8	81	85	8	282	25	22	27	24	2.00
50717312--50717567	79	3.3	79	82	9	224	26	21	27	24	1.99
50725300--50725484	79	2.3	81	84	7	236	24	22	27	25	2.00
50725301--50725484	40	4.6	40	83	9	216	24	22	27	25	2.00
50725353--50725517	79	2.1	79	84	6	210	26	21	27	25	1.99
50728652--50728820	46	3.6	46	81	6	180	22	29	20	27	1.98
50728604--50728823	94	2.3	92	81	7	239	23	30	19	27	1.98
50730819--50730970	27	5.6	27	93	3	241	26	13	28	30	1.94
50730819--50730970	55	2.8	55	94	0	259	26	13	28	30	1.94
50738060--50738092	16	2.1	16	100	0	66	45	12	0	42	1.41
50751225--50751255	9	3.4	9	90	0	53	25	9	25	38	1.86
50751548--50751607	30	2.0	31	87	9	88	18	35	0	46	1.49
50753208--50753249	19	2.2	19	83	8	50	50	2	4	42	1.36
50754154--50754204	24	2.1	24	82	7	59	58	3	1	35	1.28
50754815--50754839	6	4.2	6	100	0	50	20	0	16	64	1.30
50758675--50758791	58	2.0	58	98	0	225	33	10	21	35	1.87
50768730--50768790	30	2.0	30	90	0	95	26	6	11	55	1.59
50770860--50770978	41	2.9	41	75	12	120	32	20	15	31	1.93
50772288--50772316	14	2.1	14	93	6	51	86	0	13	0	0.58
50773889--50773923	3	11.7	3	100	0	70	0	31	0	68	0.90
50777879--50777908	15	2.0	15	93	0	51	0	16	6	76	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50779820--50779869	20	2.5	20	100	0	100	36	14	8	42	1.74
50784199--50784248	2	25.0	2	100	0	100	50	50	0	0	1.00
50785112--50785278	75	2.2	74	84	5	203	38	12	11	36	1.80
50787552--50787637	31	2.8	31	89	1	129	26	25	13	33	1.94
50787855--50787926	26	2.8	25	87	6	99	27	19	25	27	1.99
50788062--50788109	25	1.9	25	86	0	69	29	16	22	31	1.96
50795219--50795304	31	2.8	31	91	1	138	26	26	13	32	1.94
50795522--50795593	26	2.8	25	89	6	108	27	20	25	26	1.99
50795735--50795782	25	1.9	25	86	0	69	29	16	22	31	1.96
50808666--50808717	24	2.1	25	86	10	72	25	15	1	57	1.48
50810878--50810921	20	2.2	20	91	0	70	36	31	2	29	1.70
50811000--50811062	33	1.9	33	83	3	83	28	25	15	30	1.96
50820166--50820460	50	5.9	50	74	4	155	26	17	26	29	1.98
50820121--50820453	151	2.2	150	85	0	450	26	18	25	28	1.98
50824618--50824655	18	2.0	20	85	10	53	31	2	18	47	1.62
50839405--50839448	14	3.4	14	70	23	51	45	0	13	40	1.44
50839404--50839460	24	2.4	24	94	2	98	49	0	12	38	1.41
50856011--50856119	34	3.2	34	85	1	146	31	22	25	21	1.98
50871025--50871076	27	1.9	27	84	0	68	21	23	21	34	1.97
50885489--50885548	27	2.3	26	82	2	66	23	21	20	35	1.96
50893082--50893376	49	5.9	49	83	3	374	26	19	24	29	1.98
50893084--50893376	100	2.9	100	96	0	523	26	19	24	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50907276--50907402	27	4.7	27	81	2	148	41	20	8	29	1.82
50907276--50907430	27	5.8	26	79	6	132	41	20	8	29	1.81
50907534--50907607	27	2.7	27	76	12	71	37	20	20	21	1.94
50907547--50907611	27	2.4	27	82	5	78	35	18	24	21	1.96
50908420--50908489	25	2.8	24	91	4	104	24	27	24	24	2.00
50908419--50908502	25	3.4	24	83	8	98	27	23	23	25	2.00
50908785--50908855	31	2.4	31	90	4	110	26	15	28	29	1.96
50919415--50919578	43	3.8	43	72	15	133	31	23	16	28	1.96
50925320--50925469	67	2.2	67	81	8	171	32	17	28	21	1.96
50925344--50925527	67	2.8	64	77	8	194	29	17	29	22	1.97
50926109--50926135	13	2.1	13	100	0	54	44	7	0	48	1.31
50946352--50946391	21	1.9	21	89	0	62	45	0	20	35	1.51
50946869--50946921	25	2.2	24	82	3	61	18	22	20	37	1.94
50956039--50956134	28	3.6	27	80	16	103	55	8	3	33	1.46
50956157--50956191	16	2.2	16	89	0	52	54	11	5	28	1.59
50956276--50956332	26	2.2	27	84	6	73	40	10	8	40	1.71
50959119--50959175	29	2.0	29	100	0	114	36	14	14	35	1.86
50960315--50960376	31	2.0	31	93	0	106	32	19	6	41	1.77
50960324--50960372	15	3.2	16	70	18	50	30	16	6	46	1.71
50967184--50967261	18	4.0	18	69	18	57	33	0	6	60	1.22
50967295--50967337	18	2.6	16	79	13	50	48	0	2	48	1.14
50967300--50967342	18	2.4	18	92	0	68	48	0	4	46	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50967418--50967455	19	2.0	19	100	0	76	47	10	10	31	1.72
50973739--50973786	24	2.0	25	83	4	62	14	22	20	41	1.89
50976918--50976962	20	2.2	20	84	7	56	44	0	15	40	1.47
50979869--50979993	48	2.7	45	80	12	130	22	26	18	32	1.97
50985599--50985798	27	7.4	27	85	3	233	35	20	20	24	1.96
50985599--50985798	81	2.5	80	88	3	283	35	20	20	24	1.96
50985599--50985798	54	3.7	54	86	1	267	35	20	20	24	1.96
50986552--50986615	33	2.0	32	84	3	83	20	23	20	35	1.96
50992578--50992750	27	6.4	27	86	0	211	35	18	19	26	1.94
50996887--50997244	57	6.2	57	90	0	518	29	34	17	18	1.94
50996917--50997242	28	11.5	28	71	5	215	30	33	17	18	1.95
50997731--50997842	57	2.0	57	96	0	206	33	22	16	27	1.96
50999267--50999326	28	2.2	26	77	11	66	26	26	11	35	1.91
50999281--50999352	28	2.6	28	88	0	99	29	27	12	30	1.93
51006240--51006284	20	2.2	20	88	0	63	51	0	13	35	1.41
51013367--51013413	23	2.0	23	100	0	94	46	12	4	36	1.62
51014979--51015081	38	2.7	38	84	0	125	28	26	23	22	1.99
51018396--51018632	116	2.1	116	99	0	467	39	8	27	24	1.84
51018942--51018982	7	6.1	7	82	5	50	73	2	2	21	1.07
51039214--51039349	55	2.5	55	76	1	139	29	30	25	13	1.94
51042860--51042890	16	1.9	16	100	0	62	29	6	32	32	1.83
51056440--51056814	49	7.5	49	79	3	426	24	18	26	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51056435--51056827	100	3.9	100	97	0	714	24	19	26	29	1.98
51059368--51059438	24	2.9	24	75	4	70	19	23	18	38	1.93
51059495--51059562	26	2.7	24	80	10	73	20	25	17	36	1.94
51064417--51064514	49	2.0	49	87	0	142	28	11	26	33	1.91
51070384--51070424	20	2.0	20	100	0	82	39	31	24	4	1.76
51073361--51073508	48	3.1	48	87	0	206	29	24	6	39	1.81
51085081--51085109	14	2.0	15	93	6	51	51	20	0	27	1.47
51087561--51087639	37	2.1	37	90	0	122	25	31	18	24	1.98
51087758--51088168	47	8.7	47	97	0	750	29	30	8	32	1.86
51096922--51097264	47	7.1	47	90	6	524	31	8	30	29	1.87
51105801--51105829	14	2.0	15	93	6	51	51	20	0	27	1.47
51116143--51116664	49	10.9	49	94	2	866	31	9	30	28	1.88
51116143--51116662	192	2.7	192	92	1	900	31	9	30	28	1.88
51121759--51121793	16	2.2	16	100	0	70	62	11	0	25	1.28
51128434--51128509	19	3.8	19	80	11	82	78	2	6	11	1.03
51128446--51128513	7	9.9	7	73	9	50	77	1	7	13	1.03
51129147--51129191	21	2.1	21	83	4	54	71	4	8	15	1.28
51133288--51133318	16	1.9	16	93	0	53	35	22	0	41	1.54
51133285--51133324	20	2.0	20	85	0	53	37	22	0	40	1.54
51133510--51133765	55	4.8	53	81	8	254	20	25	18	35	1.95
51133557--51133757	108	1.8	110	90	4	327	21	25	18	34	1.96
51148473--51148531	16	3.7	16	76	0	55	50	18	22	8	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51148473--51148531	24	2.5	24	82	0	64	50	18	22	8	1.73
51148473--51148515	8	5.5	8	88	2	52	51	20	20	6	1.71
51148741--51148819	29	2.8	28	83	9	81	22	18	31	26	1.97
51156401--51156737	40	8.5	40	95	2	556	25	27	22	24	2.00
51169531--51169600	26	2.7	26	86	0	95	25	28	18	27	1.98
51173389--51173420	8	4.0	8	91	0	55	46	25	25	3	1.67
51173667--51173731	28	2.3	28	94	0	112	33	27	7	30	1.85
51173837--51173926	28	3.2	27	85	7	119	20	24	23	32	1.98
51173837--51173951	55	2.1	56	83	8	146	19	24	21	34	1.96
51204264--51204310	20	2.2	22	85	7	62	23	6	8	61	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235