genome.fa.s4.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  187  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63733354--63733472	45	2.6	45	78	2	123	23	27	20	28	1.99
63733533--63733877	45	7.7	45	68	13	181	25	24	21	28	1.99
63733399--63733886	135	3.6	134	85	1	573	26	23	21	28	1.99
63762234--63762683	225	2.0	225	95	0	812	28	17	24	28	1.98
63766381--63766565	79	2.3	81	84	7	236	24	22	27	25	2.00
63766382--63766565	40	4.6	40	83	9	216	24	22	27	25	2.00
63766434--63766598	79	2.1	79	84	6	210	26	21	27	25	1.99
63776519--63776617	42	2.3	42	81	5	119	31	23	19	26	1.98
63776541--63776639	42	2.3	44	83	10	116	31	24	21	23	1.98
63776540--63776667	44	3.0	44	77	10	104	32	22	21	23	1.98
63780928--63781024	27	3.7	26	75	14	99	39	16	0	44	1.48
63780943--63781016	13	5.6	13	75	12	71	43	14	0	41	1.46
63780943--63781016	26	2.8	27	78	15	82	43	14	0	41	1.46
63780928--63781024	13	7.3	13	72	15	65	39	16	0	44	1.48
63781105--63781152	25	1.9	25	82	0	60	29	18	22	29	1.98
63786256--63786286	13	2.4	13	100	0	62	41	16	6	35	1.74
63792727--63792762	19	1.9	18	88	5	54	25	0	13	61	1.33
63794764--63794810	22	2.2	21	84	3	58	36	21	8	34	1.84
63794783--63794833	19	2.9	16	78	18	57	37	15	9	37	1.81
63794781--63794822	19	2.1	21	91	8	70	35	16	9	38	1.81
63798358--63798423	19	3.2	21	87	6	64	36	19	9	34	1.84
63798375--63798472	19	5.2	19	91	7	155	36	15	10	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63798375--63798472	36	2.6	37	88	9	144	36	15	10	37	1.81
63798874--63799374	211	2.3	217	88	3	735	27	21	18	32	1.97
63799277--63799822	273	2.0	273	99	0	1074	28	21	16	33	1.95
63799582--63800723	220	5.2	220	87	2	1509	28	21	17	32	1.96
63799584--63800723	441	2.6	436	86	3	1578	28	21	17	32	1.96
63800365--63800525	89	1.8	87	82	5	207	28	20	17	33	1.95
63800676--63801018	73	4.7	73	100	0	686	30	15	18	35	1.92
63800968--63801562	220	2.7	220	89	1	933	27	21	17	33	1.96
63801300--63801838	276	2.0	276	96	0	988	28	23	17	30	1.97
63801576--63802098	220	2.4	220	93	0	868	27	23	17	31	1.97
63801813--63801973	89	1.8	87	86	5	234	27	24	17	31	1.97
63801080--63802058	496	2.0	496	92	1	1649	27	23	17	31	1.97
63801942--63802235	131	2.2	131	95	0	525	25	23	18	32	1.97
63802073--63802757	220	3.1	220	89	0	1021	28	23	17	30	1.97
63802757--63803479	220	3.3	220	90	1	1101	27	21	17	33	1.96
63802073--63804240	721	2.9	726	83	5	2746	28	22	17	32	1.96
63803373--63803568	89	2.2	89	90	0	311	27	18	17	35	1.94
63803412--63804342	220	4.2	220	86	5	1179	28	21	16	33	1.95
63802885--63804008	529	2.1	529	86	2	1555	28	21	16	33	1.95
63803872--63804333	232	2.0	232	88	1	685	28	23	16	32	1.96
63803368--63804349	452	2.2	440	84	6	1224	28	21	16	32	1.95
63804259--63804445	94	2.0	93	100	0	365	27	23	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63804403--63804853	89	5.1	89	95	1	757	30	22	15	30	1.95
63804855--63805407	219	2.5	219	83	2	655	29	20	16	32	1.95
63805266--63805506	131	1.8	131	87	0	356	27	23	17	32	1.96
63805266--63805538	131	2.1	131	84	1	350	27	23	17	32	1.97
63804990--63805764	351	2.2	350	82	4	954	28	21	17	32	1.95
63805377--63806372	220	4.5	219	93	1	1519	28	22	17	31	1.96
63805693--63805853	89	1.8	87	82	7	209	28	21	17	32	1.96
63804866--63805975	571	1.9	570	87	2	1640	28	21	17	32	1.96
63806041--63806715	362	1.9	362	95	0	1233	29	21	17	30	1.96
63812356--63812533	27	6.6	27	80	5	162	29	28	16	25	1.97
63812377--63812528	82	1.9	81	86	4	216	29	28	15	25	1.96
63818192--63819109	39	23.5	39	97	0	1705	27	22	25	23	2.00
63827462--63827654	50	4.0	49	76	11	198	40	18	9	31	1.83
63836227--63836264	19	2.0	19	85	10	51	18	10	0	71	1.14
63848238--63848476	41	5.8	41	88	6	299	28	24	20	27	1.99
63854453--63854651	50	4.0	50	78	0	191	41	17	11	30	1.84
63854453--63854651	100	2.0	100	84	0	263	41	17	11	30	1.84
63860269--63860295	13	2.1	13	100	0	54	14	37	33	14	1.88
63862365--63862400	13	2.7	13	86	4	54	66	0	2	30	1.06
63862343--63862402	16	3.8	16	72	17	54	63	1	5	30	1.25
63862237--63862457	19	11.8	19	64	20	67	62	1	4	30	1.27
63864067--63864622	210	2.7	210	85	4	736	27	21	19	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63870691--63870792	53	1.9	53	95	0	186	24	13	28	33	1.93
63872721--63872770	15	3.5	15	82	15	61	42	10	24	24	1.85
63887131--63887174	20	2.2	20	100	0	88	13	29	9	47	1.74
63896762--63896850	43	2.1	42	85	6	117	32	24	17	24	1.97
63899135--63899279	42	3.4	42	80	6	139	34	26	15	23	1.95
63910510--63910575	12	5.4	12	77	10	71	48	12	18	21	1.80
63910558--63910635	31	2.5	31	80	2	93	52	11	11	24	1.70
63910519--63910599	37	2.2	37	84	0	99	51	12	14	20	1.74
63910772--63910871	27	3.7	26	88	5	128	36	21	24	19	1.95
63911032--63911096	22	3.0	22	73	13	62	35	21	23	20	1.96
63911523--63911716	27	7.2	27	82	0	219	25	21	19	33	1.97
63911523--63911716	54	3.6	53	86	3	253	25	21	19	33	1.97
63911523--63911716	81	2.4	81	83	0	246	25	21	19	33	1.97
63911709--63911786	27	2.9	27	80	0	84	33	8	24	33	1.87
63911766--63911857	27	3.4	27	83	3	87	31	8	17	42	1.80
63911737--63912176	81	5.4	80	85	2	461	32	7	20	40	1.81
63911809--63912176	27	13.6	27	85	0	466	32	7	19	40	1.80
63918755--63918913	43	3.7	43	78	9	173	31	27	18	22	1.97
63924606--63924646	22	1.9	22	85	5	57	56	26	4	12	1.56
63927057--63927195	42	3.3	41	76	6	136	27	20	17	33	1.96
63929772--63929903	47	2.8	48	82	1	158	34	28	14	23	1.94
63930015--63930065	21	2.4	22	90	3	77	39	17	7	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63930836--63930951	58	2.0	58	98	0	223	33	15	3	47	1.62
63935341--63935365	11	2.3	11	100	0	50	28	0	0	72	0.86
63935730--63935821	46	2.0	45	91	2	148	36	2	30	29	1.69
63939553--63939611	27	2.2	27	90	6	93	20	23	25	30	1.98
63950562--63950745	40	4.6	40	83	6	205	23	21	27	27	1.99
63950562--63950742	80	2.3	81	84	9	230	23	21	27	27	1.99
63951178--63951363	93	2.0	93	96	0	345	22	21	22	33	1.97
63958506--63958858	40	8.7	38	78	11	206	25	20	28	25	1.99
63958561--63958818	128	2.0	129	93	0	446	25	20	28	25	1.99
63958709--63958891	79	2.3	80	82	1	226	25	20	27	25	1.99
63958954--63959129	88	2.0	88	97	0	334	30	17	22	30	1.96
63960917--63960973	27	2.2	26	83	3	69	19	24	21	35	1.96
63967587--63967652	27	2.4	27	84	0	78	37	18	18	25	1.93
63968302--63968353	27	2.0	26	84	3	68	21	26	17	34	1.95
63981638--63981812	34	5.1	34	60	15	92	38	17	17	26	1.92
63981616--63981818	68	3.0	68	99	0	397	38	17	16	27	1.91
63985286--63985427	41	3.5	41	93	0	239	30	27	19	22	1.98
63986585--63986611	13	2.1	13	100	0	54	48	22	0	29	1.51
63988604--63988729	27	4.7	26	81	6	135	27	17	26	27	1.98
63988603--63988729	54	2.3	54	82	11	152	28	17	26	27	1.98
63994088--63994261	41	4.3	40	82	3	204	20	29	15	34	1.94
63997441--63997513	27	2.7	27	82	0	74	30	35	15	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63997476--63997527	27	1.9	27	88	0	77	30	36	17	15	1.91
64000341--64000488	43	3.5	42	77	12	151	27	18	25	28	1.98
64002959--64002987	14	2.0	15	93	6	51	27	0	20	51	1.47
64004090--64004260	43	4.0	42	74	11	152	24	19	26	28	1.99
64008372--64008468	46	2.1	46	96	0	176	25	22	19	31	1.98
64024774--64024840	32	2.1	32	97	0	125	58	10	8	22	1.59
64036610--64036787	27	6.6	27	81	5	171	28	28	16	26	1.97
64036631--64036786	82	1.9	81	86	3	224	28	28	16	26	1.97
64040097--64040215	47	2.5	46	81	9	134	36	14	22	26	1.93
64040097--64040198	46	2.2	46	85	5	134	36	13	24	25	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235