genome.fa.s4.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  173  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58778311--58778358	22	2.2	22	88	7	71	68	0	6	25	1.12
58778323--58778439	55	2.1	55	81	10	134	56	3	10	29	1.49
58778488--58778555	5	12.2	5	75	17	55	52	1	17	27	1.53
58778474--58778525	23	2.3	23	83	6	61	57	0	17	25	1.40
58778488--58778555	12	6.1	10	73	18	55	52	1	17	27	1.53
58778488--58778555	17	4.0	17	79	11	61	52	1	17	27	1.53
58778488--58778579	28	3.2	29	80	8	100	48	1	18	31	1.55
58778663--58778701	16	2.5	15	84	12	51	64	0	10	25	1.25
58778693--58778751	17	3.5	17	74	4	57	50	0	13	35	1.42
58781374--58781553	90	2.0	90	88	0	270	53	14	7	25	1.66
58781476--58781628	75	2.0	75	93	0	261	49	15	7	26	1.72
58781408--58781708	165	1.8	165	89	0	476	52	14	6	25	1.67
58781775--58781817	21	2.0	21	82	8	52	65	11	2	20	1.36
58782697--58782734	14	2.7	14	76	15	51	31	10	0	57	1.32
58788096--58788216	39	3.1	39	91	0	188	39	21	25	13	1.90
58790340--58790394	13	4.5	13	81	9	62	69	1	7	21	1.23
58790548--58790593	24	1.9	23	82	8	56	67	6	8	17	1.39
58790745--58790800	22	2.5	22	80	11	69	71	0	7	21	1.09
58790854--58790927	3	24.3	3	72	5	51	56	2	4	36	1.32
58805331--58805508	27	6.6	27	83	3	205	26	15	28	29	1.96
58805332--58805487	82	1.9	81	88	3	233	26	15	28	29	1.96
58805328--58805508	82	2.2	81	83	2	229	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58806868--58807019	37	4.1	37	92	0	232	26	32	19	21	1.97
58807182--58807555	47	8.0	47	88	1	536	27	29	11	32	1.91
58814190--58814241	21	2.5	21	75	6	52	17	25	32	25	1.97
58818696--58818785	29	3.1	29	85	1	119	30	27	13	28	1.94
58832514--58832540	4	6.8	4	100	0	54	48	0	0	51	1.00
58835925--58836028	31	3.4	29	80	10	100	51	6	0	41	1.28
58836769--58836806	13	2.6	14	84	16	51	5	10	2	81	0.94
58842383--58842417	12	3.0	12	87	8	54	40	0	0	60	0.97
58842397--58842617	121	1.8	122	94	1	390	36	5	9	47	1.61
58844362--58844606	87	2.8	86	93	3	420	22	20	31	24	1.98
58844362--58844606	43	5.7	43	96	1	411	22	20	31	24	1.98
58844681--58844761	31	2.5	31	82	4	90	62	18	2	16	1.43
58845007--58845052	21	2.2	21	84	0	56	2	50	19	28	1.60
58851219--58851296	37	2.1	37	87	0	111	25	33	16	24	1.96
58851414--58851544	49	2.7	48	89	8	201	28	32	9	30	1.88
58857378--58857409	16	2.0	16	100	0	64	56	6	12	25	1.59
58865294--58865388	48	2.0	48	95	0	172	43	10	13	32	1.78
58866411--58866513	43	2.4	43	96	0	197	23	15	34	26	1.94
58866495--58866568	29	2.6	29	84	4	96	25	16	31	27	1.96
58866879--58866995	40	2.9	40	80	7	114	25	23	25	24	2.00
58868990--58869029	19	2.0	20	90	4	64	42	17	0	40	1.49
58871942--58871999	27	2.1	27	87	0	80	25	13	20	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58872633--58872712	40	2.0	40	95	0	142	25	3	21	50	1.65
58876525--58876603	39	2.0	39	100	0	158	32	12	17	36	1.88
58876817--58876875	30	2.0	30	86	6	84	38	5	28	27	1.78
58877384--58877520	51	3.0	44	75	16	134	22	16	27	32	1.96
58881233--58881296	15	4.3	15	88	7	94	12	10	17	59	1.61
58888389--58888435	23	2.0	23	95	0	85	23	29	8	38	1.84
58890434--58890650	46	4.6	48	78	7	176	24	29	19	26	1.99
58892024--58892148	47	2.7	48	80	6	132	32	20	24	22	1.97
58901514--58901604	45	2.0	45	93	0	155	25	12	24	38	1.90
58909166--58909217	27	2.0	26	82	14	63	21	19	19	40	1.92
58909256--58909381	24	5.3	23	74	11	101	19	23	20	35	1.96
58909255--58909397	72	2.0	73	83	9	186	20	23	20	34	1.96
58919108--58919231	41	3.0	39	76	15	108	16	20	26	35	1.95
58919122--58919236	41	2.8	41	78	2	124	17	21	26	34	1.95
58927342--58927392	22	2.2	25	89	10	81	62	3	5	27	1.36
58927374--58927413	13	2.6	16	81	18	50	67	2	7	22	1.28
58927468--58927494	13	2.1	13	100	0	54	22	37	14	25	1.93
58933622--58933656	18	1.9	18	88	11	54	31	5	8	54	1.54
58935619--58935681	29	2.1	31	82	11	78	36	17	12	33	1.88
58936552--58936610	29	2.0	29	100	0	118	44	10	10	35	1.72
58943358--58943462	40	2.6	40	89	3	158	23	28	22	24	1.99
58956748--58956857	41	2.7	41	89	0	175	31	21	24	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58956843--58957179	41	8.7	40	83	7	285	26	20	24	28	1.99
58956889--58956983	32	3.0	32	98	0	181	24	25	23	27	2.00
58956953--58957179	83	2.8	81	83	4	278	26	20	23	29	1.99
58957966--58958008	21	2.0	21	86	8	61	25	2	27	44	1.66
58958419--58958474	7	7.6	7	91	4	76	67	3	1	26	1.16
58958393--58958480	8	10.9	8	79	9	65	62	4	2	30	1.27
58958419--58958477	22	2.6	22	86	7	84	64	3	1	30	1.20
58964545--58964639	42	2.3	42	83	3	111	25	18	26	29	1.98
58965564--58965740	46	3.8	48	78	13	156	28	19	31	20	1.97
58965568--58965781	47	4.6	46	73	17	138	29	19	28	21	1.98
58970331--58970517	49	3.8	49	80	4	234	28	25	18	27	1.98
58970336--58970522	100	1.9	99	94	1	329	28	25	19	26	1.98
58981155--58981208	23	2.4	22	81	12	56	3	22	1	72	1.10
58986064--58986277	47	4.6	48	77	9	167	28	19	28	22	1.98
58986020--58986281	140	1.9	141	81	8	320	29	18	29	22	1.98
58993093--58993264	93	1.8	93	96	0	317	27	29	21	20	1.98
58993086--58993261	46	3.8	46	79	12	216	28	29	21	20	1.98
59000668--59001024	94	3.8	92	92	4	492	28	29	19	21	1.98
59000715--59001073	47	7.7	47	88	9	531	28	29	19	22	1.98
59003641--59003708	30	2.3	30	97	0	127	19	35	29	16	1.93
59006149--59006373	40	5.7	40	84	5	278	24	21	27	26	1.99
59006156--59006406	119	2.1	119	80	7	269	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59009554--59009869	48	6.6	48	83	2	350	25	30	18	25	1.98
59011682--59011757	38	2.0	38	97	0	143	32	21	5	40	1.75
59013058--59013334	27	10.3	27	81	2	182	39	23	7	29	1.83
59013070--59013333	54	4.9	54	80	4	232	39	21	7	30	1.82
59013074--59013336	81	3.3	81	80	3	228	39	22	7	30	1.83
59013326--59013430	27	3.9	27	86	2	131	36	18	21	23	1.95
59013634--59013703	25	2.8	25	89	4	106	28	22	21	27	1.99
59013644--59013730	25	3.5	24	84	6	70	27	24	20	27	1.99
59023035--59023130	40	2.4	40	91	5	151	22	29	22	25	1.99
59029539--59029564	8	3.2	8	100	0	52	23	38	0	38	1.55
59032674--59033088	48	8.7	48	85	1	438	26	28	18	26	1.98
59038919--59038956	9	4.2	9	80	12	51	18	2	10	68	1.30
59038908--59038977	27	2.6	28	76	21	69	18	4	5	71	1.23
59044316--59044383	34	2.0	34	100	0	136	47	17	11	23	1.81
59046672--59047050	50	7.5	50	78	5	334	30	26	17	24	1.97
59046669--59047008	151	2.3	151	91	1	549	30	26	18	24	1.98
59046658--59047054	101	3.9	101	78	5	365	29	26	18	25	1.98
59051647--59051990	27	12.7	27	83	1	357	40	18	9	31	1.82
59052026--59052166	27	5.2	27	87	5	196	34	18	19	26	1.95
59052024--59052192	54	3.1	54	84	5	200	34	17	20	27	1.95
59052620--59052684	22	3.0	22	75	8	60	20	21	21	36	1.95
59052843--59052916	27	2.8	27	89	2	105	17	24	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59053064--59053121	19	3.4	19	65	30	58	18	17	17	46	1.84
59053057--59053172	6	18.7	6	73	19	87	18	18	15	47	1.83
59053057--59053188	31	4.3	31	85	3	169	18	17	15	48	1.81
59056915--59057343	50	8.5	50	73	10	275	31	25	17	26	1.97
59056908--59057343	151	2.9	152	86	3	603	31	25	17	26	1.97
59057107--59057296	101	1.9	101	87	2	283	30	22	20	27	1.98
59061424--59061534	43	2.6	42	77	5	116	27	26	15	30	1.96
59066840--59066924	25	3.4	25	73	14	68	24	28	11	35	1.91
59066863--59066936	25	3.0	25	71	15	71	25	25	12	36	1.91
59068769--59068841	36	2.0	36	97	0	137	35	9	27	27	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235