genome.fa.s4.2.7.7.80.10.50.1000.208.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  208  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70876869--70876908	19	2.1	19	85	4	53	62	7	0	30	1.23
70877054--70877088	3	11.7	3	87	0	52	60	0	0	40	0.97
70877054--70877088	12	2.9	12	95	0	61	60	0	0	40	0.97
70877095--70877133	21	1.9	21	89	5	62	84	2	0	12	0.72
70877871--70877916	16	2.9	16	83	6	58	10	8	0	80	0.91
70879674--70879735	26	2.4	25	79	15	65	40	3	0	56	1.15
70883427--70883463	15	2.4	16	86	13	51	70	0	8	21	1.13
70888321--70888387	12	5.8	12	74	22	56	47	0	1	50	1.10
70888298--70888389	27	3.5	28	74	18	81	46	1	1	51	1.15
70888325--70888388	22	2.8	23	78	19	71	46	0	1	51	1.10
70888321--70888387	34	1.9	36	85	11	95	47	0	1	50	1.10
70888350--70888484	58	2.3	58	84	6	175	43	1	2	51	1.25
70889849--70889896	18	2.6	18	83	3	51	66	2	6	25	1.26
70889855--70889896	18	2.3	19	87	4	59	66	2	7	23	1.28
70889849--70889944	28	3.5	28	80	4	79	65	3	4	27	1.26
70889875--70889947	9	8.0	9	69	14	51	67	2	2	27	1.18
70892132--70892171	10	4.2	10	84	9	57	45	0	25	30	1.54
70892132--70892171	19	2.1	19	95	0	71	45	0	25	30	1.54
70892988--70893034	14	3.4	14	75	0	58	51	21	2	25	1.59
70892979--70893034	28	2.0	28	100	0	112	53	17	3	25	1.60
70893581--70893874	95	3.2	94	91	4	453	30	14	23	31	1.94
70893767--70893928	38	4.0	38	76	13	171	30	12	25	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70893715--70893952	85	2.8	85	90	1	363	29	13	25	31	1.94
70899100--70899360	48	5.5	48	96	1	463	34	15	20	29	1.94
70899338--70899397	21	3.0	21	67	18	65	33	10	26	30	1.89
70899338--70899412	38	2.0	38	91	0	123	32	12	25	30	1.92
70911764--70911803	19	2.1	19	100	0	80	30	20	10	40	1.85
70918211--70918388	27	6.6	27	83	3	205	26	15	28	29	1.96
70918212--70918367	82	1.9	81	88	3	233	26	15	28	29	1.96
70918208--70918388	82	2.2	81	83	2	229	27	15	27	29	1.96
70921314--70921370	27	2.1	27	83	0	69	24	35	17	22	1.95
70937695--70937870	94	1.9	94	97	0	334	28	11	19	40	1.86
70937905--70937968	24	2.7	24	82	4	76	20	15	32	31	1.94
70939698--70940005	48	6.6	48	81	8	266	26	20	29	23	1.99
70939698--70940005	94	3.3	93	81	5	322	26	20	29	23	1.99
70941827--70941870	24	2.0	21	83	16	54	11	27	31	29	1.91
70942296--70942332	18	2.1	18	90	5	58	35	0	24	40	1.55
70954553--70954597	20	2.2	20	88	0	63	35	13	2	48	1.54
70958527--70958551	12	2.1	12	100	0	50	16	8	16	60	1.58
70959269--70959437	92	1.8	92	88	2	259	27	18	27	25	1.98
70959407--70959580	47	3.7	48	75	14	177	28	19	31	20	1.97
70960563--70960611	23	2.1	23	96	0	89	16	26	28	28	1.97
70963473--70963524	25	2.1	25	89	3	79	28	19	19	32	1.96
70963480--70963549	25	2.8	25	88	0	95	25	21	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70963753--70963918	27	6.2	27	87	2	210	27	19	18	34	1.95
70963754--70963918	53	3.1	53	87	3	233	27	20	17	35	1.95
70963754--70963918	54	3.1	54	90	1	244	27	20	17	35	1.95
70963914--70963989	27	2.8	26	80	9	80	32	7	23	35	1.84
70963940--70964298	27	13.3	27	78	7	237	30	8	20	39	1.83
70963957--70964271	54	5.8	54	82	4	307	30	8	21	40	1.83
70964011--70964272	81	3.2	81	79	1	301	30	8	20	40	1.82
70963999--70964298	81	3.7	80	77	7	300	30	8	20	40	1.82
70973563--70973607	20	2.2	20	88	0	63	35	13	2	48	1.54
70978462--70978513	25	2.1	24	82	10	61	38	23	21	17	1.93
70981607--70981689	41	2.0	41	97	0	157	37	19	8	34	1.82
71003577--71003631	20	2.8	20	88	0	83	25	29	16	29	1.97
71007090--71007267	27	6.6	27	77	6	137	30	28	15	25	1.96
71007090--71007267	54	3.3	54	78	7	164	30	28	15	25	1.96
71013506--71013731	50	4.5	50	82	8	253	24	18	27	29	1.98
71013502--71013743	101	2.4	97	84	5	288	24	19	27	29	1.98
71013831--71013882	27	2.0	26	81	11	61	38	1	23	36	1.66
71014948--71015028	43	1.9	42	82	7	101	24	19	24	30	1.98
71021325--71021395	27	2.6	27	80	4	81	42	21	12	23	1.87
71034818--71034853	17	2.1	17	100	0	72	47	5	16	30	1.70
71040624--71040675	27	2.0	26	81	11	61	38	1	23	36	1.66
71047949--71048058	55	2.0	55	94	0	193	34	14	24	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71059868--71059899	16	2.0	16	100	0	64	50	31	6	12	1.65
71063399--71063441	16	2.8	15	82	6	59	53	23	18	4	1.63
71063664--71063768	28	3.7	29	80	9	137	26	18	32	22	1.97
71070976--71072322	673	2.0	673	99	0	2685	29	15	22	33	1.94
71078139--71078209	15	4.7	15	76	11	74	11	16	14	57	1.64
71080599--71080769	93	1.8	93	85	0	243	23	20	25	29	1.99
71083715--71083785	15	4.7	15	76	11	74	11	16	14	57	1.64
71086173--71086348	46	3.8	46	80	12	216	20	21	29	28	1.98
71086170--71086340	93	1.8	93	94	0	306	20	21	29	28	1.98
71087433--71087647	108	2.0	108	95	0	385	32	10	21	34	1.88
71089601--71089672	26	2.8	26	93	0	117	26	20	25	27	1.99
71092220--71092361	44	3.3	43	77	14	150	26	19	23	30	1.98
71093560--71093624	15	4.4	15	72	16	55	63	13	13	9	1.53
71096643--71096871	49	4.7	49	85	5	284	29	26	18	26	1.98
71104737--71104894	43	3.7	42	76	16	128	24	19	24	31	1.98
71104774--71104894	43	2.8	43	80	9	131	24	19	24	31	1.98
71117287--71117408	43	2.9	42	80	7	156	31	15	23	28	1.95
71118891--71118921	13	2.4	13	94	0	53	9	25	32	32	1.88
71125487--71125599	27	4.2	27	87	3	140	34	21	23	20	1.97
71125487--71125600	55	2.1	55	83	6	153	35	21	23	20	1.96
71128463--71128594	40	3.3	40	80	3	142	25	28	21	25	1.99
71133304--71133955	40	16.5	40	88	4	959	21	22	28	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71133304--71133945	119	5.4	119	88	5	969	21	22	28	27	1.99
71133304--71133922	79	7.8	79	92	4	1034	21	22	28	28	1.99
71134397--71134897	251	2.0	251	98	0	966	28	9	23	37	1.87
71140720--71140894	89	2.0	89	100	0	350	32	10	26	30	1.90
71141827--71142456	80	7.9	80	91	3	991	22	19	27	30	1.98
71141826--71142456	40	15.8	40	86	3	876	22	19	27	30	1.98
71147898--71147927	10	3.1	10	95	4	53	50	10	6	33	1.62
71149002--71149114	27	4.2	28	90	3	171	34	22	24	18	1.96
71149002--71149115	55	2.1	54	88	6	178	35	21	24	18	1.96
71159523--71159682	72	2.2	72	85	2	205	23	18	26	30	1.98
71161801--71161882	43	1.9	43	87	0	119	21	19	30	28	1.98
71169665--71169970	27	11.6	27	75	6	153	39	21	7	31	1.80
71169955--71170096	27	5.3	27	82	3	160	34	19	19	26	1.96
71169925--71170097	81	2.1	81	80	4	215	36	19	17	27	1.94
71169962--71170096	54	2.5	54	89	2	191	34	19	20	25	1.96
71170519--71170583	6	10.7	6	81	15	80	16	18	16	47	1.83
71170490--71170569	31	2.6	31	88	4	108	17	17	16	48	1.81
71173310--71173419	55	2.0	55	98	0	211	30	14	20	35	1.92
71175302--71175406	53	2.0	53	98	0	201	39	9	24	26	1.86
71177902--71177933	15	2.1	15	94	5	55	12	12	15	59	1.61
71179978--71180037	30	2.0	30	83	6	77	36	10	25	28	1.88
71180680--71180925	49	4.9	50	80	2	280	26	17	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71182746--71182779	16	2.1	16	94	0	59	47	32	5	14	1.69
71184130--71184244	29	4.0	28	78	8	106	25	14	30	29	1.95
71188976--71189141	46	3.6	46	71	19	155	21	19	28	29	1.98
71190095--71190225	66	2.0	66	96	0	244	32	13	25	28	1.94
71194194--71194262	28	2.5	28	86	11	90	30	27	14	27	1.95
71201997--71202219	40	5.6	39	85	3	241	26	27	20	24	1.99
71201997--71202219	120	1.9	119	81	6	272	26	27	20	24	1.99
71211544--71211607	28	2.3	28	84	12	80	31	25	14	29	1.94
71212526--71212625	50	2.0	50	100	0	200	44	16	10	30	1.80
71214896--71215055	40	4.0	40	94	0	275	23	27	19	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235