genome.fa.s4.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  68  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23371324--23371369	22	2.0	22	91	4	74	36	10	13	39	1.79
23381562--23381602	21	2.0	21	85	0	55	7	9	12	70	1.33
23386927--23386955	1	29.0	1	100	0	58	100	0	0	0	0.00
23393562--23393591	15	2.0	15	93	0	51	56	3	0	40	1.16
23395117--23395180	18	3.7	18	80	14	64	40	1	1	56	1.18
23395133--23395221	18	5.6	14	71	19	52	32	2	3	61	1.24
23399324--23399568	40	6.2	40	79	7	221	31	20	15	32	1.94
23399338--23399564	119	1.9	119	83	1	294	31	21	14	33	1.93
23408038--23408100	26	2.4	25	76	7	72	20	17	22	39	1.92
23411401--23411454	27	2.0	27	85	0	72	40	5	14	38	1.70
23411746--23411790	20	2.2	20	96	0	81	8	31	42	17	1.80
23413576--23413600	12	2.1	12	100	0	50	0	24	0	76	0.80
23413670--23413727	8	7.1	8	76	3	53	39	1	0	58	1.08
23416488--23416605	45	2.6	44	73	8	112	22	22	13	42	1.88
23417402--23417469	32	2.1	32	81	5	75	29	10	17	42	1.82
23420949--23421191	40	6.1	40	74	14	184	24	23	25	25	2.00
23420984--23421168	79	2.3	80	87	0	255	23	24	25	25	2.00
23420989--23421191	79	2.6	78	82	5	246	24	24	25	26	2.00
23425930--23425977	10	4.7	10	89	2	69	35	10	18	35	1.85
23425930--23425995	20	3.2	21	87	4	82	34	10	19	34	1.86
23428135--23428187	26	2.0	26	82	7	63	22	15	22	39	1.91
23430450--23430687	47	5.1	47	90	2	325	27	29	10	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23430519--23430643	23	5.2	25	61	30	67	28	28	11	32	1.91
23430497--23430618	22	5.3	22	64	27	65	26	29	12	31	1.92
23430468--23430687	94	2.3	94	92	0	359	27	29	10	32	1.91
23433779--23433860	26	3.2	26	91	0	137	35	24	6	34	1.80
23434054--23434182	65	2.0	65	98	0	249	28	18	14	37	1.91
23436419--23437556	47	24.1	47	97	0	2096	29	30	8	31	1.88
23444301--23444353	26	2.0	26	82	7	63	22	15	22	39	1.91
23456526--23456568	22	1.9	23	85	4	61	23	51	2	23	1.60
23462729--23462768	21	1.9	21	89	0	62	27	12	5	55	1.58
23475798--23475839	19	2.2	19	87	8	59	78	4	7	9	1.08
23476888--23476937	18	2.8	18	87	0	73	58	0	28	14	1.37
23476885--23476962	24	3.2	24	79	0	93	58	0	28	12	1.34
23480896--23480925	11	2.7	11	94	0	51	83	6	3	6	0.90
23481012--23481048	12	3.2	12	88	7	58	75	5	2	16	1.10
23481012--23481048	11	3.3	11	92	3	56	75	5	2	16	1.10
23482083--23482162	24	3.2	24	69	5	61	66	1	23	8	1.27
23482093--23482191	12	8.6	12	68	20	59	66	1	20	12	1.29
23482146--23482194	17	2.7	18	81	9	64	67	0	18	14	1.23
23482126--23482192	29	2.4	27	85	9	91	70	0	17	11	1.17
23482209--23482271	33	1.9	33	84	12	85	55	6	25	12	1.60
23483229--23483428	40	5.0	40	95	0	330	24	20	28	28	1.99
23483229--23483463	80	3.0	80	87	2	251	25	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23488361--23488511	42	3.5	42	75	8	144	33	17	20	27	1.96
23489888--23490164	54	5.1	54	83	6	289	35	20	19	24	1.96
23489921--23490163	27	9.0	26	87	3	306	34	19	20	25	1.96
23490387--23490496	27	4.0	28	88	3	145	20	21	20	37	1.95
23490991--23491063	31	2.4	31	88	0	101	20	17	13	47	1.81
23490991--23491084	6	15.3	6	70	12	66	21	17	12	48	1.79
23496109--23496179	25	2.8	24	85	8	88	26	26	21	25	1.99
23496109--23496187	25	3.2	24	82	8	70	30	25	18	25	1.98
23496402--23496477	30	2.5	32	87	8	113	34	21	25	19	1.96
23496402--23496475	31	2.4	29	88	6	103	33	20	25	20	1.97
23502015--23502136	55	2.2	55	82	2	147	14	27	25	32	1.95
23502015--23502153	55	2.5	55	79	0	143	15	28	27	29	1.96
23502394--23502445	26	2.0	25	96	3	95	21	3	42	30	1.70
23522082--23522169	34	2.6	33	89	5	131	27	25	23	23	2.00
23523665--23523839	46	3.8	47	76	14	175	21	21	27	29	1.98
23523661--23523830	92	1.8	92	89	2	270	21	21	28	28	1.99
23535103--23535177	35	2.1	35	95	0	132	32	24	13	30	1.93
23537009--23537048	18	2.2	18	86	8	55	62	0	7	30	1.23
23545376--23545547	40	4.3	40	90	2	249	27	28	19	24	1.99
23545376--23545600	79	2.8	78	82	5	236	26	28	21	24	1.99
23545378--23545600	119	1.9	120	82	6	283	26	27	21	24	1.99
23553317--23553847	40	13.3	40	98	0	999	27	25	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23554368--23554423	24	2.3	24	96	0	103	50	10	3	35	1.55
23556102--23556313	40	5.3	39	86	4	228	26	22	26	24	2.00
23556102--23556311	80	2.6	80	85	3	255	26	22	26	24	2.00
23556102--23556346	80	3.1	80	80	6	189	27	21	26	24	1.99
23565435--23565558	40	3.1	39	91	2	167	28	27	23	20	1.99
23565543--23565574	16	2.0	16	100	0	64	31	25	25	18	1.98
23565503--23565614	56	2.0	56	89	0	170	28	25	24	21	1.99
23565563--23565714	40	3.8	40	87	2	207	25	29	24	20	1.99
23567601--23567816	48	4.5	48	79	6	226	25	17	29	27	1.97
23567601--23567816	96	2.3	95	84	8	269	25	17	29	27	1.97
23570213--23570343	45	2.9	45	81	5	156	26	21	19	32	1.97
23575586--23575689	46	2.3	46	83	3	129	31	26	13	27	1.94
23575882--23575929	23	2.1	23	100	0	96	47	8	12	31	1.71
23577710--23577817	27	4.0	27	83	9	114	33	9	18	38	1.83
23580464--23580505	21	2.0	21	100	0	84	23	14	4	57	1.56
23583123--23583170	22	2.2	22	100	0	96	20	12	8	58	1.60
23587556--23587626	26	2.7	26	80	4	70	18	18	28	35	1.94
23593896--23594017	50	2.4	49	91	4	208	27	26	18	27	1.98
23602517--23602562	23	2.0	23	86	4	65	58	4	2	34	1.30
23604189--23604236	24	2.1	22	85	11	62	52	10	12	25	1.71
23609042--23609142	6	16.3	6	75	17	91	49	15	15	18	1.80
23609062--23609142	31	2.6	31	96	2	144	49	16	16	18	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23609278--23609379	27	3.8	26	84	5	114	37	20	22	19	1.95
23609296--23609397	54	1.9	54	84	4	127	37	21	22	18	1.94
23610046--23610249	27	7.6	27	88	2	293	26	21	19	33	1.97
23610094--23610268	81	2.2	81	87	2	244	28	18	19	33	1.96
23610094--23610294	81	2.5	81	83	3	217	28	17	19	33	1.95
23610234--23610357	27	4.7	27	82	4	117	29	6	22	41	1.78
23610261--23610398	27	5.2	26	78	8	118	29	5	24	40	1.76
23610295--23610506	27	7.9	27	80	9	159	33	6	24	35	1.81
23610350--23610506	81	1.9	81	80	5	183	35	7	24	32	1.84
23610486--23610550	27	2.4	27	89	0	103	32	12	18	36	1.88
23610529--23610589	27	2.3	27	88	0	86	29	8	22	39	1.83
23610539--23610599	27	2.3	27	91	0	95	29	8	21	40	1.82
23614513--23614719	53	3.8	53	76	3	180	38	17	24	19	1.93
23615907--23615937	16	1.9	16	93	0	53	48	0	3	48	1.17
23622725--23622987	40	6.6	40	88	3	325	24	20	27	26	1.99
23622764--23623022	80	3.3	80	85	3	256	25	20	27	25	1.99
23624313--23624386	27	2.8	27	89	2	105	31	13	18	36	1.90
23634132--23634354	40	5.6	39	85	3	241	26	27	20	24	1.99
23634132--23634354	120	1.9	119	81	6	272	26	27	20	24	1.99
23642044--23642266	40	5.6	39	87	3	259	27	27	20	25	1.99
23642044--23642266	120	1.9	119	83	4	288	27	27	20	25	1.99
23642198--23642275	40	1.9	41	82	10	97	29	28	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23649958--23650180	40	5.6	39	85	3	241	26	27	20	24	1.99
23649958--23650180	120	1.9	119	81	6	272	26	27	20	24	1.99
23651953--23652352	200	2.0	200	99	0	791	27	23	23	26	2.00
23658160--23658380	40	5.6	39	85	3	237	26	28	20	24	1.99
23666208--23666392	40	4.7	40	81	5	178	27	28	20	24	1.99
23666175--23666392	40	5.5	39	77	7	174	26	27	20	25	1.99
23670631--23670781	68	2.2	68	77	12	155	21	29	15	33	1.95
23674272--23674427	27	5.8	27	83	3	206	29	21	8	41	1.82
23674279--23674455	54	3.3	54	88	3	248	31	18	9	40	1.82
23674249--23674455	81	2.6	81	75	6	202	32	20	8	38	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235