genome.fa.s4.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  89  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31047133--31047460	174	1.9	174	96	0	611	30	14	24	31	1.94
31049848--31049933	31	2.8	31	96	1	156	26	27	17	27	1.98
31050152--31050221	25	2.8	26	84	4	90	24	24	25	25	2.00
31051018--31051086	27	2.6	28	82	13	83	26	23	20	30	1.98
31051030--31051094	27	2.4	27	84	5	87	23	24	16	35	1.95
31051194--31051347	27	5.7	27	86	2	220	29	7	22	40	1.80
31051154--31051347	54	3.6	53	83	3	201	31	6	20	41	1.77
31051170--31051339	81	2.1	81	84	6	229	30	7	21	41	1.79
31051194--31051375	27	6.7	27	79	12	171	29	8	21	41	1.82
31051194--31051389	81	2.4	81	81	7	220	29	9	21	39	1.85
31051379--31051564	27	6.9	27	86	2	239	39	7	23	29	1.82
31054910--31055026	58	2.0	59	96	1	218	30	33	17	17	1.94
31054994--31055306	46	6.8	46	88	5	452	29	29	20	21	1.98
31054994--31055306	139	2.3	138	88	3	452	29	29	20	21	1.98
31056672--31056748	31	2.5	31	93	4	129	27	25	18	28	1.98
31056967--31057036	25	2.8	25	89	4	106	22	24	28	24	1.99
31057851--31057900	26	1.9	26	84	8	66	26	24	22	28	1.99
31057963--31058059	27	3.5	27	81	13	108	32	9	17	40	1.81
31058049--31058173	27	4.7	26	85	4	169	28	8	23	39	1.84
31058049--31058173	54	2.3	54	87	2	189	28	8	23	39	1.84
31058046--31058217	27	6.3	26	76	12	125	29	10	22	38	1.87
31058209--31058325	27	4.3	27	85	4	164	38	9	25	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31063395--31063569	23	7.3	23	74	11	124	30	20	21	27	1.98
31064863--31064903	21	2.0	21	86	9	59	19	31	12	36	1.89
31067549--31067823	138	2.0	138	91	0	451	41	10	21	27	1.85
31081873--31082050	27	6.6	27	84	3	205	29	28	15	26	1.96
31081894--31082049	82	1.9	81	88	3	233	29	28	15	26	1.96
31083975--31084030	15	3.7	15	77	15	62	14	14	8	62	1.54
31087444--31087510	20	3.3	20	89	0	107	32	13	20	32	1.92
31087561--31087679	23	5.1	23	91	2	193	28	19	20	31	1.97
31087560--31087700	23	6.0	24	88	4	191	28	19	21	30	1.98
31102220--31102537	46	6.7	49	77	12	276	27	18	31	22	1.98
31108327--31108410	27	3.2	26	86	5	114	17	22	22	36	1.94
31113345--31113405	30	2.0	30	83	0	77	31	24	6	37	1.81
31114419--31114527	47	2.3	47	96	0	200	26	28	19	25	1.99
31114878--31114935	30	1.9	30	92	0	98	27	25	13	32	1.94
31118184--31118446	46	5.6	46	73	14	173	27	17	30	24	1.97
31118184--31118356	46	3.7	46	82	9	174	29	17	28	23	1.97
31124859--31124976	42	2.8	42	79	7	114	25	16	27	31	1.96
31124928--31125023	47	2.0	47	81	2	111	27	19	25	28	1.99
31126605--31126646	20	2.1	20	100	0	84	50	14	21	14	1.78
31128575--31129443	138	6.3	138	99	0	1729	25	18	25	30	1.98
31134347--31134408	17	3.7	17	77	12	74	33	8	17	40	1.79
31134348--31134414	33	2.0	33	100	0	134	32	8	19	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31134365--31134414	16	3.1	16	72	16	57	34	8	20	38	1.82
31134665--31134787	62	2.0	62	96	0	228	45	14	16	23	1.84
31139345--31139580	33	7.2	33	100	0	472	33	9	18	38	1.83
31140929--31141132	39	5.2	39	98	0	390	25	30	24	19	1.98
31143764--31143858	29	3.3	29	85	1	120	29	31	13	25	1.94
31148816--31148868	27	2.0	27	92	0	88	39	15	15	30	1.87
31155144--31155176	13	2.5	13	95	0	57	15	24	39	21	1.91
31155186--31155228	22	1.9	23	85	4	61	34	13	39	11	1.82
31157747--31157903	67	2.3	67	92	4	260	20	29	17	31	1.96
31160459--31160559	19	5.6	18	70	14	66	18	4	0	75	1.04
31160459--31160516	5	11.2	5	76	20	57	18	1	0	79	0.82
31160469--31160509	9	4.7	9	79	14	50	19	2	0	78	0.87
31160459--31160533	37	2.0	38	84	7	100	17	2	1	78	0.93
31160463--31160533	6	11.5	6	76	11	72	16	2	1	78	0.94
31169361--31169486	40	3.2	40	86	3	166	22	21	28	27	1.99
31178603--31178655	22	2.4	23	77	20	60	43	24	0	32	1.55
31179480--31179634	43	3.6	44	81	12	155	32	24	18	25	1.97
31199819--31199915	44	2.2	44	94	0	167	31	28	17	21	1.96
31205874--31205900	13	2.1	13	100	0	54	14	37	33	14	1.88
31217791--31217931	41	3.6	40	77	10	130	25	22	26	24	2.00
31217791--31217931	40	3.5	40	77	6	119	25	22	26	24	2.00
31228350--31228567	47	4.7	47	81	9	207	27	19	29	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31228400--31228563	46	3.6	45	84	8	179	28	18	29	23	1.98
31233410--31233449	21	2.0	21	90	5	64	20	22	40	17	1.92
31235082--31235145	30	2.1	30	85	0	83	34	18	9	37	1.83
31242219--31242282	31	2.1	31	96	0	119	34	7	29	28	1.85
31243312--31243378	25	2.7	25	90	0	107	46	8	20	23	1.79
31243734--31243798	22	3.0	22	77	8	69	29	24	26	20	1.99
31244226--31244729	27	19.0	27	85	3	585	24	20	18	36	1.95
31244577--31244729	73	2.1	72	91	1	243	24	20	17	36	1.94
31244663--31244736	26	2.8	27	89	4	114	29	17	14	37	1.90
31244720--31244890	27	6.3	27	75	6	114	33	8	19	38	1.83
31244800--31244952	54	2.9	54	81	2	157	31	6	21	40	1.79
31244786--31244952	27	6.2	26	81	4	136	31	6	20	41	1.78
31246668--31246996	175	1.9	174	94	0	577	31	24	14	30	1.94
31246949--31247027	29	2.7	30	82	13	110	30	30	13	25	1.94
31264925--31265239	48	6.8	48	72	10	226	29	18	26	25	1.98
31265013--31265171	84	1.9	83	86	1	228	31	18	25	25	1.97
31265103--31265240	47	2.9	48	79	10	156	31	20	26	21	1.98
31268126--31268168	2	21.0	2	80	4	50	46	0	4	48	1.22
31269455--31269623	43	3.9	44	74	12	143	25	15	24	34	1.94
31275821--31275998	27	6.6	27	84	3	205	29	28	15	26	1.96
31275842--31275997	82	1.9	81	88	3	233	29	28	15	26	1.96
31284011--31284242	27	8.6	27	87	2	304	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31284011--31284242	109	2.1	108	86	2	313	29	28	15	26	1.96
31291948--31291994	20	2.3	20	92	7	78	36	10	19	34	1.86
31292029--31292138	26	4.3	26	84	5	129	30	20	23	26	1.98
31292029--31292138	52	2.2	50	85	8	143	30	20	23	26	1.98
31299333--31299497	83	2.0	83	98	0	321	21	12	27	39	1.88
31300280--31300326	20	2.3	20	92	7	78	38	10	17	34	1.84
31300376--31300485	26	4.4	25	87	7	145	28	20	22	29	1.98
31301018--31301110	26	3.7	25	91	5	136	26	22	21	29	1.99
31302295--31302342	25	1.9	25	86	0	69	31	22	18	27	1.97
31302378--31302424	20	2.3	20	92	7	78	38	10	17	34	1.84
31302474--31302577	26	4.1	25	87	6	140	28	20	21	29	1.98
31312207--31312344	42	3.2	43	77	6	138	23	16	26	32	1.96
31319439--31319527	42	2.1	42	95	0	160	51	14	5	28	1.65
31319440--31319549	42	2.6	42	85	7	107	51	13	5	29	1.63
31327863--31327948	42	2.0	42	93	4	147	50	13	4	31	1.63
31327973--31328012	19	2.2	18	95	4	71	42	15	2	40	1.60
31329465--31329777	42	7.5	42	90	2	463	17	16	24	40	1.90
31334142--31334319	27	6.6	27	84	3	205	29	28	15	26	1.96
31334163--31334318	82	1.9	81	88	3	233	29	28	15	26	1.96
31347317--31347381	28	2.3	28	94	0	112	33	27	7	30	1.85
31347487--31347576	28	3.2	27	85	7	119	20	24	23	32	1.98
31347487--31347601	55	2.1	56	83	8	146	19	24	21	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31348040--31348078	19	2.1	19	85	0	51	15	5	7	71	1.26
31350229--31350364	24	5.7	24	89	0	200	39	28	13	18	1.88
31367509--31367540	16	2.0	16	93	0	55	56	34	0	9	1.32
31369906--31370101	38	4.9	38	80	13	223	27	13	27	31	1.94
31372875--31372992	29	4.1	29	83	4	125	29	12	29	27	1.93
31375642--31375725	28	3.0	28	82	6	98	27	11	32	28	1.92
31377802--31377885	28	3.0	28	82	6	98	27	11	32	28	1.92
31379570--31379681	27	4.2	26	86	5	143	35	23	25	15	1.94
31379570--31379681	54	2.1	53	88	1	161	35	23	25	15	1.94
31381084--31381160	24	3.2	24	90	0	118	22	40	2	35	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235