genome.fa.s4.2.7.7.80.10.50.1000.204.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  204  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69406982--69407011	13	2.3	13	100	0	60	53	10	0	36	1.35
69406957--69407167	56	3.8	56	91	3	352	48	17	0	33	1.51
69406957--69407167	113	1.9	112	93	3	361	48	17	0	33	1.51
69406936--69407192	113	2.3	109	82	10	342	47	16	0	34	1.52
69407121--69407241	9	13.6	9	71	12	63	42	19	2	34	1.65
69407138--69407224	36	2.5	36	84	3	124	45	17	2	34	1.61
69412810--69412906	21	4.6	21	80	10	117	28	17	50	3	1.61
69413288--69413445	43	3.7	42	95	0	244	24	31	22	20	1.98
69413288--69413445	86	1.8	86	93	0	271	24	31	22	20	1.98
69415131--69415256	41	3.1	41	83	1	146	20	21	15	42	1.89
69417518--69417578	29	2.1	28	82	8	70	47	16	13	22	1.81
69419373--69419424	24	2.2	24	82	0	59	53	11	1	32	1.48
69421751--69421995	49	4.9	50	81	3	280	28	25	17	27	1.98
69421752--69421995	100	2.5	99	82	4	294	29	25	17	27	1.98
69423340--69423364	13	1.9	13	100	0	50	36	8	8	48	1.62
69424528--69424580	24	2.2	24	89	0	79	58	28	3	9	1.47
69424699--69424750	24	2.2	24	85	0	68	55	11	1	30	1.46
69426666--69426717	24	2.2	24	89	0	77	55	9	1	32	1.43
69431299--69431399	50	2.0	49	96	1	184	26	30	9	32	1.89
69432353--69432439	36	2.7	30	72	24	95	26	16	24	33	1.95
69442622--69442770	43	3.5	42	82	9	178	26	19	24	30	1.98
69446593--69446765	47	3.7	47	90	0	256	34	12	27	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69446601--69446672	22	3.1	22	64	24	58	33	13	29	23	1.93
69446735--69446921	48	3.8	48	86	8	277	35	6	26	31	1.83
69446736--69446921	100	1.9	96	89	6	284	36	6	26	30	1.83
69447067--69447175	37	2.9	37	90	2	166	22	17	31	28	1.97
69448071--69448143	34	2.1	34	87	5	103	31	23	20	24	1.98
69451415--69452276	40	21.6	40	98	0	1656	27	27	22	22	1.99
69460626--69460746	40	3.0	40	88	5	167	28	27	21	23	1.99
69463725--69463829	52	2.0	52	88	0	156	38	6	21	33	1.80
69471239--69471277	20	2.0	20	85	10	53	48	12	0	38	1.42
69481788--69481868	41	2.0	41	85	7	112	29	30	13	25	1.94
69483845--69483966	42	2.8	42	76	6	111	34	24	16	24	1.95
69483826--69483994	43	3.9	43	76	5	128	34	24	17	23	1.96
69486578--69486729	27	5.6	27	80	0	169	40	24	16	19	1.91
69486578--69486741	81	2.0	81	83	2	204	40	22	17	19	1.91
69486738--69486845	54	2.0	54	83	0	135	31	12	18	37	1.89
69486735--69486869	27	5.0	27	77	4	121	28	14	20	37	1.91
69487160--69487205	18	2.6	18	82	0	56	21	15	17	45	1.85
69489368--69489403	9	3.8	9	86	13	54	83	0	0	16	0.65
69492879--69493031	43	3.6	42	80	9	168	23	18	26	32	1.97
69495562--69495673	27	4.2	26	86	7	143	37	23	23	16	1.93
69495562--69495673	54	2.1	54	88	3	163	37	23	23	16	1.93
69503821--69503853	16	2.1	16	94	0	57	51	33	3	12	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69505074--69505112	16	2.4	16	91	0	60	48	15	20	15	1.81
69505328--69505438	29	3.9	29	75	6	102	30	13	28	27	1.94
69505705--69505755	27	2.0	27	88	7	79	47	21	17	13	1.82
69508923--69509145	39	5.6	39	80	9	215	25	26	22	25	2.00
69508923--69509146	40	5.7	40	84	9	257	25	26	22	25	2.00
69508923--69509146	79	2.8	80	81	10	253	25	26	22	25	2.00
69508923--69509146	118	1.9	120	81	10	282	25	26	22	25	2.00
69513756--69513862	40	2.7	38	87	8	151	28	26	24	20	1.99
69516765--69516909	40	3.6	40	98	0	272	22	23	27	26	2.00
69516765--69516942	80	2.2	80	90	3	270	24	22	26	25	2.00
69522907--69523100	40	4.9	39	88	3	253	21	29	24	24	1.99
69529619--69529814	53	3.6	53	77	3	167	38	17	23	20	1.93
69533867--69533900	17	1.9	18	88	5	52	38	5	5	50	1.51
69539575--69539631	27	2.1	27	93	0	96	19	24	22	33	1.97
69540724--69540970	40	6.2	41	76	13	196	23	22	27	26	2.00
69540764--69540947	79	2.3	80	88	0	262	23	22	27	26	2.00
69540764--69540970	79	2.6	78	83	5	245	23	22	27	26	2.00
69545439--69545483	22	2.0	22	83	8	56	53	0	8	37	1.32
69546791--69546830	2	20.0	2	94	0	71	47	50	2	0	1.14
69549065--69549289	40	5.7	39	89	3	308	25	28	23	22	1.99
69549065--69549289	79	2.8	78	86	4	308	25	28	23	22	1.99
69559469--69559569	52	2.0	50	84	7	132	34	14	13	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69562978--69563026	21	2.3	21	96	0	89	22	22	26	28	1.99
69564083--69564118	18	2.0	18	100	0	72	50	16	5	27	1.68
69567498--69567579	41	2.0	41	95	0	146	31	19	15	32	1.93
69576346--69576573	48	4.9	48	72	11	193	28	25	20	25	1.99
69585135--69585365	114	2.0	114	100	0	462	44	18	13	23	1.86
69587914--69588228	39	8.1	39	91	0	504	24	29	24	21	1.99
69587914--69588228	78	4.0	78	97	0	576	24	29	24	21	1.99
69602083--69602123	20	2.0	20	85	0	55	36	4	7	51	1.51
69603176--69603263	44	2.0	44	95	0	158	50	4	21	23	1.67
69604089--69604294	61	3.4	61	75	7	168	31	16	23	29	1.96
69609630--69609682	21	2.5	21	78	0	61	16	37	30	15	1.90
69614450--69614544	40	2.4	40	83	0	118	24	18	24	32	1.97
69618840--69618937	51	1.9	51	95	0	178	25	11	24	38	1.88
69622131--69622277	40	3.7	40	90	3	217	31	25	22	20	1.98
69623673--69623843	85	2.0	85	98	0	333	39	23	4	31	1.75
69630218--69630324	40	2.7	38	81	8	124	30	26	22	20	1.98
69636959--69637022	28	2.3	28	88	0	92	20	17	35	26	1.94
69637347--69637811	27	17.3	27	80	4	447	40	20	9	30	1.83
69639100--69639270	93	1.8	93	91	0	279	27	28	22	22	1.99
69639095--69639267	46	3.7	46	77	10	190	28	27	21	22	1.99
69642161--69642257	47	2.0	48	94	2	169	41	13	10	35	1.78
69644755--69644782	14	2.0	14	100	0	56	35	28	0	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69651335--69651369	18	2.1	16	89	10	52	28	0	2	68	1.04
69654169--69654271	50	2.1	50	98	0	197	35	11	20	32	1.89
69656388--69656412	12	2.1	12	100	0	50	24	8	16	52	1.70
69669427--69669460	12	2.9	12	86	4	52	32	0	0	67	0.91
69669582--69669644	31	2.1	31	93	3	110	58	9	1	30	1.39
69670666--69670694	15	2.0	15	93	6	51	68	0	0	31	0.89
69671434--69671487	22	2.4	23	78	9	67	22	5	0	72	1.05
69672744--69672852	52	2.1	52	91	3	175	40	11	16	31	1.85
69679900--69679939	21	1.9	21	84	0	53	42	10	17	30	1.82
69684242--69684504	40	6.6	39	86	4	278	25	27	21	25	1.99
69684242--69684504	120	2.2	119	82	4	307	25	27	21	25	1.99
69684436--69684513	40	1.9	41	82	10	97	26	28	20	24	1.99
69692225--69692409	40	4.7	40	81	5	178	27	28	20	24	1.99
69692192--69692409	40	5.5	39	77	7	165	25	27	20	25	1.99
69694213--69694302	44	2.1	43	95	2	162	35	32	14	17	1.90
69699299--69700199	48	18.8	48	97	0	1660	28	22	29	19	1.98
69701527--69701563	19	1.9	19	89	10	58	43	10	18	27	1.83
69701696--69701793	46	2.1	46	94	0	169	43	7	17	31	1.76
69711600--69711688	45	2.0	45	100	0	178	24	16	22	35	1.95
69717152--69717215	15	4.3	15	78	7	67	14	10	18	56	1.67
69719507--69719563	30	1.9	29	85	3	78	47	1	26	24	1.62
69720094--69720177	44	1.9	44	95	0	150	21	16	27	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69729779--69729867	41	2.2	41	91	2	144	22	25	37	14	1.92
69731153--69731210	21	2.7	21	81	2	80	17	32	25	24	1.96
69736146--69736196	20	2.7	19	82	14	54	41	0	21	37	1.54
69737960--69738013	26	2.1	26	100	0	108	29	24	14	31	1.95
69742789--69742862	29	2.6	29	89	4	105	25	16	32	25	1.96
69748206--69748388	79	2.3	80	83	7	221	24	27	22	24	2.00
69748204--69748388	40	4.7	40	82	7	225	24	28	22	24	2.00
69750670--69750756	44	2.0	44	88	0	129	22	14	20	41	1.89
69757704--69757851	43	3.5	44	74	10	137	25	18	26	29	1.98
69757742--69757859	42	2.8	42	70	13	107	26	17	25	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235