Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  125  of  235  ( 28198 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42606566--42606591
13
2.0
13
100
0
52
53
0
7
38
1.30
42606683--42606763
42
1.9
42
82
9
103
40
0
4
54
1.22
42606751--42606786
5
7.8
5
82
17
51
41
0
0
58
0.98
42606757--42606782
13
2.0
13
100
0
52
38
0
0
61
0.96
42606752--42606786
18
2.0
17
94
5
61
40
0
0
60
0.97
42607945--42608002
18
3.4
18
72
18
70
32
5
17
44
1.70
42612426--42612570
42
3.4
43
76
10
147
30
22
16
31
1.96
42615502--42615616
23
4.8
22
81
11
106
33
20
22
23
1.97
42615526--42615615
24
3.7
23
85
7
110
34
21
21
23
1.97
42616164--42616190
13
2.1
13
100
0
54
66
0
0
33
0.92
42624071--42624138
24
2.7
26
84
4
95
35
19
22
23
1.96
42626012--42626117
28
3.7
28
69
27
78
26
27
18
27
1.98
42626017--42626156
60
2.3
59
84
10
178
27
26
19
27
1.99
42632205--42632274
6
10.9
7
92
4
89
15
28
0
55
1.41
42632911--42632944
7
4.9
7
88
0
50
52
14
5
26
1.64
42638741--42638772
3
10.7
3
100
0
64
31
0
0
68
0.90
42639337--42639400
9
7.6
8
78
16
60
25
0
1
73
0.92
42639245--42639375
38
3.4
37
73
10
104
25
4
3
67
1.24
42639327--42639400
16
4.3
18
80
14
68
24
0
1
74
0.90
42639346--42639393
25
2.0
24
91
4
78
25
0
0
75
0.81
42639605--42639647
21
2.0
23
86
13
65
62
0
2
34
1.08
42639625--42639666
9
4.7
9
79
8
50
64
0
2
33
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42642296--42642438
25
5.8
25
73
10
107
55
4
6
32
1.48
42642329--42642410
27
3.3
25
77
11
71
57
4
4
32
1.41
42642287--42642429
74
1.9
73
81
4
171
55
4
6
32
1.46
42642454--42642505
24
2.2
23
83
10
61
59
0
3
36
1.16
42644930--42644964
3
11.3
3
87
6
52
62
0
37
0
0.95
42644926--42644964
19
2.1
18
90
4
60
61
0
38
0
0.96
42644931--42644962
16
2.0
16
93
0
55
59
0
40
0
0.97
42645338--42645511
54
3.1
54
61
20
122
33
1
16
48
1.53
42645237--42645567
114
2.9
115
92
0
556
33
1
14
51
1.50
42647709--42647804
33
2.9
33
75
14
99
19
45
10
23
1.81
42651436--42651495
27
2.2
27
100
0
120
30
30
23
16
1.96
42651449--42651538
27
3.3
27
84
3
101
28
25
25
20
1.99
42654561--42654607
21
2.2
22
92
3
78
21
19
38
21
1.94
42657955--42658088
26
4.9
26
68
22
80
57
3
3
35
1.34
42659851--42659884
12
2.8
12
90
0
50
67
0
0
32
0.91
42668754--42668954
35
5.8
35
87
1
280
36
23
12
26
1.91
42668757--42668954
69
2.9
69
87
0
297
36
24
12
26
1.90
42670087--42670137
12
3.8
12
77
22
57
50
5
0
43
1.26
42670080--42670137
29
2.0
29
100
0
116
48
10
0
41
1.37
42670080--42670126
17
3.1
17
71
28
59
46
12
0
40
1.42
42671560--42671611
15
3.2
15
73
19
50
44
0
1
53
1.11
42671692--42671747
22
2.6
22
83
5
62
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42673429--42673477
15
3.3
15
82
0
62
24
28
24
22
1.99
42673394--42673504
57
1.9
57
83
0
141
27
26
23
23
2.00
42674201--42674280
40
2.0
40
95
0
142
43
17
5
33
1.71
42675836--42675903
30
2.3
29
82
7
82
19
23
25
32
1.97
42676099--42676149
16
3.1
16
80
2
57
60
0
1
37
1.08
42677921--42678111
57
3.3
60
74
9
162
21
16
16
46
1.84
42678708--42678741
17
2.1
16
88
5
50
20
8
0
70
1.13
42680966--42680999
14
2.4
15
90
9
54
70
2
0
26
1.01
42680995--42681096
30
3.4
30
77
10
86
29
19
3
47
1.68
42681483--42681544
3
21.0
3
78
15
51
70
0
29
0
0.87
42681483--42681545
13
4.8
13
78
14
58
71
0
28
0
0.86
42681484--42681545
21
2.9
22
83
7
74
72
0
27
0
0.85
42681486--42681532
24
2.0
24
87
8
69
68
0
31
0
0.90
42681487--42681545
24
2.5
24
81
10
68
72
0
27
0
0.84
42682246--42682408
17
9.4
17
78
9
159
30
12
10
47
1.74
42682246--42682408
35
4.7
34
79
8
168
30
12
10
47
1.74
42682369--42682497
36
3.4
38
71
16
115
35
9
12
42
1.75
42683073--42683117
18
2.5
19
80
20
60
33
0
0
66
0.92
42684348--42684393
11
4.1
11
84
15
67
36
0
0
63
0.95
42687935--42688058
46
2.8
46
91
3
200
27
22
16
33
1.96
42687935--42688169
37
5.8
45
87
8
207
26
21
15
36
1.93
42688020--42688196
37
4.8
37
95
0
300
26
20
13
38
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42695634--42695757
46
2.8
46
91
3
200
27
22
16
33
1.96
42695634--42695868
37
5.8
45
87
8
207
26
21
15
36
1.93
42695719--42695895
37
4.8
37
95
0
300
26
20
13
38
1.90
42700586--42700618
11
3.0
11
95
0
57
3
9
15
72
1.21
42700622--42700660
11
3.5
11
78
0
51
20
12
7
58
1.58
42700626--42700668
22
2.0
22
95
0
77
23
11
6
58
1.57
42700698--42700760
30
2.1
30
84
0
81
23
1
14
60
1.43
42706066--42706095
9
3.3
9
100
0
60
10
0
0
90
0.47
42707665--42708002
132
2.6
132
86
2
448
33
19
18
27
1.96
42708851--42709007
39
4.0
39
81
6
142
21
22
28
28
1.99
42717766--42717797
17
1.9
16
93
6
55
37
6
6
50
1.53
42718073--42718120
3
16.0
3
91
0
60
66
8
0
25
1.19
42718077--42718117
21
2.0
21
95
0
73
68
9
0
21
1.18
42723964--42724009
22
2.1
21
84
11
58
60
2
0
36
1.09
42730156--42730356
24
7.8
25
67
18
92
57
6
7
28
1.52
42730299--42730356
26
2.3
24
88
5
80
60
5
5
29
1.40
42732180--42732241
29
2.1
29
88
5
90
56
0
8
35
1.29
42735486--42735603
9
12.7
9
70
8
67
37
3
3
55
1.33
42735556--42735605
19
2.7
18
78
9
55
32
0
8
60
1.26
42736990--42737210
55
4.0
54
76
13
216
30
16
19
33
1.94
42737220--42737253
16
2.1
16
94
0
59
41
8
5
44
1.60
42737474--42737604
62
2.1
63
91
1
210
43
10
10
35
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42737230--42737818
272
2.1
275
93
2
997
44
7
9
38
1.65
42737536--42737932
214
1.9
214
94
0
704
44
7
9
38
1.65
42745401--42745449
23
2.1
23
81
7
55
51
2
0
46
1.12
42747432--42747459
4
7.0
4
100
0
56
25
0
0
75
0.81
42749526--42749586
30
2.0
30
87
0
86
57
9
4
27
1.52
42749620--42749662
22
2.0
22
85
0
59
58
11
11
18
1.63
42749627--42749667
11
3.7
11
80
0
55
56
9
14
19
1.66
42749569--42749790
103
2.2
103
100
0
444
60
8
9
22
1.52
42749723--42749765
22
2.0
22
85
0
59
58
11
11
18
1.63
42749730--42749770
11
3.7
11
80
0
55
56
9
14
19
1.66
42757594--42757662
3
23.0
3
100
0
138
66
0
0
33
0.92
42764110--42764168
29
2.0
29
87
9
84
45
10
11
32
1.74
42764110--42764190
31
2.6
31
83
11
96
43
9
12
34
1.76
42766754--42766805
25
2.1
25
100
0
104
36
7
11
44
1.70
42767609--42767683
26
2.9
26
82
2
89
33
20
5
41
1.75
42773519--42773552
17
1.9
18
88
5
52
44
38
0
17
1.49
42775112--42775191
19
4.3
19
70
20
62
30
1
5
63
1.23
42778215--42778284
31
2.3
31
82
5
88
27
10
7
55
1.58
42779188--42779227
20
2.0
20
85
0
53
45
5
20
30
1.72
42783077--42783112
18
2.0
18
94
0
63
33
0
2
63
1.08
42783059--42783125
31
2.1
33
83
5
84
26
4
5
62
1.38
42795321--42795464
27
5.3
27
88
3
200
29
24
7
38
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42795468--42795659
27
7.1
27
77
5
113
42
18
11
27
1.84
42795496--42795616
54
2.2
54
86
2
172
41
19
9
30
1.82
42795522--42795646
54
2.3
54
81
2
144
41
19
11
28
1.85
42795496--42795645
81
1.9
81
81
5
187
41
18
10
29
1.84
42795640--42795713
27
2.7
27
76
12
71
37
20
20
21
1.94
42795653--42795717
27
2.4
27
82
5
78
35
18
24
21
1.96
42796567--42796700
42
3.2
42
98
0
259
31
14
20
33
1.93
42796724--42796807
31
2.7
31
96
1
152
27
17
27
27
1.98
42799992--42800076
40
2.2
40
84
2
109
28
31
22
17
1.97
42800147--42800302
47
3.3
46
86
4
199
27
29
9
33
1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235