genome.fa.s4.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  205  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69757701--69757870	85	2.0	85	82	4	209	24	18	25	30	1.98
69763935--69764014	27	3.0	26	71	12	72	18	21	18	41	1.91
69764161--69764228	33	2.0	34	88	2	102	27	14	26	30	1.95
69768809--69768845	19	2.1	17	90	10	56	35	16	5	43	1.71
69772256--69772405	39	3.9	39	91	0	221	25	19	30	25	1.98
69781906--69782373	40	11.7	40	92	5	788	25	21	27	25	1.99
69790278--69790785	40	12.7	40	91	4	794	24	19	27	27	1.99
69795206--69795243	19	2.0	20	85	15	53	39	23	0	36	1.55
69802923--69803013	46	2.0	45	87	4	130	30	28	19	20	1.97
69809397--69809454	27	2.1	27	83	0	71	36	22	18	22	1.95
69820674--69820717	22	2.0	22	100	0	88	27	13	13	45	1.81
69824384--69824542	45	3.6	45	83	3	189	25	14	24	35	1.94
69824398--69824646	45	5.7	45	77	7	185	24	17	27	30	1.97
69824387--69824646	90	3.0	88	81	7	257	24	16	26	32	1.96
69825008--69825069	20	3.2	20	77	13	83	41	1	17	38	1.59
69827567--69827602	17	2.1	18	94	5	65	11	30	47	11	1.74
69829266--69829573	47	6.6	46	74	15	217	23	28	19	28	1.98
69829213--69829573	94	3.9	93	79	10	371	23	29	19	27	1.98
69829215--69829573	141	2.6	138	77	11	374	23	29	19	27	1.98
69831656--69831704	25	2.0	25	84	8	64	38	8	18	34	1.80
69838221--69838275	23	2.4	23	81	6	67	25	25	18	30	1.98
69838493--69838625	40	3.3	40	82	2	151	36	4	18	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69838492--69838604	60	1.9	60	85	7	158	38	3	18	38	1.68
69838493--69838609	20	5.8	20	77	3	110	36	3	18	41	1.68
69838483--69838625	60	2.4	59	75	17	150	36	4	16	42	1.68
69840684--69840720	6	6.3	6	93	6	67	16	0	0	83	0.64
69856154--69856275	46	2.7	46	90	0	181	23	19	24	31	1.98
69858771--69858799	15	1.9	15	100	0	58	37	0	6	55	1.27
69861274--69861620	40	8.7	40	97	1	624	28	21	27	22	1.99
69879792--69879912	57	2.1	57	83	6	147	32	15	21	30	1.95
69884175--69884204	14	2.1	14	100	0	60	43	13	0	43	1.43
69886519--69886551	17	2.0	17	88	5	50	33	18	0	48	1.48
69886831--69886966	46	3.0	46	91	2	202	22	23	14	39	1.91
69888730--69888977	123	2.0	123	100	0	496	28	23	6	41	1.79
69889182--69889230	20	2.5	20	86	6	64	57	6	0	36	1.24
69889182--69889241	21	2.8	21	80	10	68	56	8	0	35	1.29
69890752--69890781	16	1.9	15	93	6	51	3	20	23	53	1.60
69893971--69894310	48	7.0	48	94	1	572	30	27	6	35	1.82
69898139--69898173	6	5.8	6	96	0	61	54	0	28	17	1.43
69900460--69900828	184	2.0	184	93	1	632	25	13	28	33	1.93
69900875--69900913	17	2.3	17	81	0	51	53	10	25	10	1.66
69915037--69915075	20	2.0	20	100	0	78	10	30	35	23	1.88
69916334--69916486	42	3.6	42	78	6	139	27	23	15	33	1.94
69916334--69916488	84	1.8	84	84	0	211	27	23	15	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69929405--69929581	67	2.6	67	81	7	173	31	16	29	21	1.96
69929429--69929612	67	2.8	64	77	8	194	29	17	30	22	1.97
69932439--69932498	26	2.3	26	81	16	72	33	6	16	43	1.74
69934339--69934390	25	2.1	25	92	0	86	23	13	17	46	1.83
69936197--69936274	27	2.9	26	74	14	77	21	19	20	38	1.94
69936315--69936422	27	3.9	27	78	13	103	31	8	18	41	1.80
69936294--69936582	81	3.5	80	81	6	303	31	8	20	39	1.83
69936376--69936615	81	3.0	79	83	6	286	30	9	20	39	1.84
69936403--69936615	54	3.9	53	85	4	257	30	9	20	38	1.85
69936378--69936582	27	7.6	27	86	4	265	29	7	21	40	1.81
69936378--69936622	27	9.1	26	81	8	210	29	9	21	39	1.85
69936614--69936811	81	2.4	81	90	1	308	38	7	25	28	1.83
69936614--69936799	27	6.9	27	88	2	266	38	7	24	29	1.83
69939055--69939124	25	2.8	25	91	4	106	24	24	27	24	2.00
69939925--69940002	27	2.9	26	70	14	68	23	19	19	38	1.93
69940019--69940298	27	10.3	26	78	6	202	31	10	20	38	1.85
69940019--69940289	108	2.5	107	79	5	276	31	9	19	39	1.84
69940288--69940417	27	4.8	27	80	7	147	39	5	23	31	1.77
69940288--69940417	54	2.4	54	90	2	199	39	5	23	31	1.77
69949653--69949691	18	2.2	18	95	0	69	48	15	12	23	1.79
69953921--69954015	40	2.4	41	85	3	122	25	15	26	32	1.96
69954531--69954562	15	2.1	16	94	5	57	50	0	21	28	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69959266--69959426	44	3.8	40	75	11	119	27	14	25	32	1.94
69961588--69961819	56	4.1	56	98	0	446	45	9	21	22	1.81
69962292--69962544	40	6.3	40	97	0	445	22	20	27	28	1.99
69962241--69962544	120	2.5	120	89	3	461	23	20	27	28	1.99
69979883--69979978	48	2.0	48	93	0	165	27	18	26	28	1.98
69980932--69980973	11	3.9	11	78	15	52	33	0	23	42	1.55
69980939--69980978	20	2.0	20	100	0	80	30	0	25	45	1.54
69980939--69980985	20	2.5	19	93	6	78	31	0	25	42	1.55
69981892--69981916	12	2.1	12	100	0	50	16	8	16	60	1.58
69982653--69982783	47	2.8	47	80	12	153	29	21	29	20	1.98
69990309--69990346	19	2.0	20	85	15	53	39	23	0	36	1.55
69990575--69990745	93	1.8	93	96	0	315	28	29	21	21	1.98
69990570--69990742	46	3.7	46	80	13	219	28	28	21	21	1.98
69991165--69991224	30	2.0	30	90	0	93	30	25	8	36	1.85
69998163--69998333	93	1.8	93	96	0	315	28	29	21	21	1.98
69998158--69998330	46	3.7	46	80	13	219	28	28	21	21	1.98
69999784--70000001	46	4.7	45	79	13	192	29	19	28	22	1.98
69999780--70000052	94	2.9	94	80	8	254	28	19	28	23	1.98
70001008--70001160	71	2.2	71	89	0	225	24	23	40	11	1.87
70001053--70001118	29	2.3	29	94	0	114	21	22	43	12	1.85
70001082--70001190	42	2.6	41	89	7	173	21	26	41	11	1.86
70004509--70004553	17	2.6	17	83	10	65	42	2	2	53	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70005254--70005293	17	2.3	18	83	12	57	35	2	0	62	1.09
70005531--70005602	29	2.4	30	79	4	74	41	4	9	44	1.56
70008487--70008545	20	3.2	20	67	18	63	38	3	5	52	1.40
70008471--70008545	36	2.1	36	100	0	150	36	2	5	56	1.36
70008472--70008529	17	3.3	17	68	17	55	29	1	6	62	1.31
70008483--70008554	36	2.2	32	82	12	83	37	2	6	52	1.43
70009793--70009818	11	2.4	11	100	0	52	84	0	0	15	0.62
70012093--70012142	25	2.0	25	88	0	73	34	14	16	36	1.88
70014243--70014344	45	2.2	47	83	8	122	24	21	17	36	1.95
70016681--70016791	43	2.6	43	88	0	177	27	34	27	9	1.89
70016784--70016929	38	3.8	38	90	0	211	28	26	22	21	1.99
70018623--70018798	46	3.8	46	80	12	225	21	21	28	28	1.98
70018620--70018790	93	1.8	93	96	0	315	21	21	29	28	1.98
70024117--70024314	43	4.6	43	92	0	333	31	32	25	10	1.90
70024307--70024430	38	3.2	38	89	2	167	27	27	23	21	1.99
70026321--70026352	15	2.1	15	100	0	64	43	21	12	21	1.86
70031216--70031255	22	1.9	20	90	10	62	47	30	10	12	1.74
70032444--70032482	21	1.9	20	89	5	60	46	20	0	33	1.51
70034161--70034217	28	2.0	28	100	0	114	38	17	21	22	1.93
70041964--70042043	41	2.0	41	92	0	133	25	30	23	21	1.99
70042289--70042586	27	11.1	27	82	0	328	31	8	19	40	1.82
70045740--70045956	46	4.6	48	81	6	214	23	29	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70045756--70046006	46	5.4	46	78	9	208	24	29	18	28	1.98
70045788--70046001	94	2.3	93	84	5	263	23	29	18	28	1.98
70048612--70048672	30	2.0	30	83	0	77	31	22	8	37	1.84
70053329--70053505	27	6.6	27	84	1	212	26	12	18	42	1.86
70053329--70053511	81	2.2	81	87	0	267	26	14	17	42	1.87
70053329--70053505	54	3.3	53	86	3	237	26	12	18	42	1.86
70056026--70056145	43	2.8	43	96	0	213	9	27	32	30	1.88
70056121--70056161	16	2.6	16	100	0	82	9	34	29	26	1.88
70068710--70068764	25	2.2	25	93	0	92	47	27	10	14	1.78
70074991--70075017	14	1.9	14	100	0	54	22	7	7	62	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235