genome.fa.s4.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  108  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37198539--37198610	29	2.5	28	86	11	101	27	15	29	27	1.96
37198707--37198774	29	2.3	29	85	5	93	27	30	13	27	1.94
37201406--37201557	45	3.4	44	73	8	137	36	22	15	25	1.93
37201647--37201722	33	2.3	33	86	2	98	39	9	15	35	1.80
37201673--37201789	33	3.5	34	77	3	121	39	13	11	35	1.82
37203712--37203738	14	1.9	14	100	0	54	62	0	0	37	0.95
37205487--37205515	12	2.3	13	94	5	51	17	0	0	82	0.66
37205722--37205781	17	3.4	17	71	15	50	46	1	1	50	1.21
37209596--37209678	29	3.0	28	87	8	100	12	22	3	61	1.46
37209620--37209678	29	2.0	29	100	0	118	13	23	3	59	1.50
37218773--37219793	40	25.6	40	90	0	1546	25	27	21	24	1.99
37219691--37219872	39	4.6	40	78	11	178	24	27	21	25	2.00
37218773--37219755	80	12.3	80	97	0	1781	26	27	21	24	1.99
37220181--37220259	29	2.7	29	82	5	97	27	31	15	25	1.95
37250335--37250432	44	2.3	44	82	7	121	36	25	15	22	1.93
37250278--37250428	43	3.5	42	77	8	137	32	25	17	25	1.97
37255805--37255882	35	2.2	37	86	11	119	38	8	16	35	1.80
37255805--37255875	18	3.9	19	87	12	114	38	9	15	36	1.81
37255855--37255898	23	2.0	23	86	8	65	38	4	18	38	1.71
37262667--37262725	19	3.3	19	81	6	61	81	0	13	5	0.85
37263666--37265220	205	7.7	200	92	1	2488	30	18	21	28	1.97
37265052--37265570	261	2.0	256	85	3	691	32	16	22	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37265857--37265954	17	5.5	17	83	9	115	39	11	12	36	1.78
37265849--37265954	54	1.9	55	92	1	178	39	10	13	36	1.78
37265849--37265954	19	5.8	19	84	10	150	39	10	13	36	1.78
37266135--37266213	40	2.0	40	94	0	140	11	26	12	49	1.75
37268363--37268436	29	2.6	27	82	14	87	71	1	12	14	1.21
37270459--37270517	29	2.0	29	93	0	100	38	10	20	30	1.86
37273240--37273335	30	3.2	30	73	8	104	42	1	6	50	1.34
37273262--37273366	31	3.4	29	80	7	111	37	2	5	54	1.39
37273240--37273369	61	2.1	61	91	0	206	40	2	6	50	1.40
37278840--37278882	18	2.4	18	100	0	86	34	44	0	20	1.52
37279420--37279451	6	5.3	6	100	0	64	46	0	0	53	1.00
37283265--37283299	17	2.1	17	100	0	70	25	17	22	34	1.96
37286036--37286190	46	3.4	46	84	8	167	23	29	17	29	1.97
37304876--37305015	47	3.0	47	87	2	192	34	10	29	26	1.89
37304989--37305217	46	5.0	46	95	0	386	35	9	31	23	1.86
37307429--37307826	55	7.5	53	76	10	357	24	23	16	35	1.95
37307429--37307834	54	7.6	54	78	9	379	24	23	16	35	1.94
37307441--37307887	209	2.1	209	94	0	795	24	23	15	36	1.94
37307812--37307934	47	2.6	47	94	0	210	26	23	14	35	1.93
37327482--37327879	55	7.5	53	76	10	366	23	24	16	35	1.95
37327471--37327887	54	7.9	54	78	9	383	23	24	16	35	1.94
37327494--37327940	209	2.1	209	94	0	786	24	23	15	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37327865--37327987	47	2.6	47	94	0	210	26	23	13	35	1.93
37327959--37328070	46	2.4	47	80	7	129	23	21	21	33	1.97
37336506--37336559	27	2.0	27	85	0	72	38	7	14	38	1.75
37344279--37344593	48	6.8	48	75	8	164	28	20	25	25	1.99
37344380--37344492	42	2.7	42	98	0	217	29	19	25	25	1.99
37344380--37344541	90	1.9	84	83	7	207	29	19	24	25	1.99
37344464--37344638	48	3.6	48	73	7	158	29	20	25	25	1.99
37352287--37352495	42	4.7	42	83	9	229	28	19	25	25	1.99
37352182--37352545	48	7.8	48	77	7	274	28	19	25	26	1.99
37353795--37353953	43	3.7	44	77	7	146	24	16	25	33	1.96
37355338--37355455	54	2.2	54	89	0	182	24	30	29	15	1.95
37362857--37362915	18	3.3	18	74	9	57	40	16	18	23	1.91
37363173--37363222	23	2.2	23	86	13	68	42	18	14	26	1.87
37363258--37363373	27	4.3	27	80	2	99	18	19	21	40	1.91
37368203--37368425	79	2.8	78	83	7	272	24	27	22	25	2.00
37368203--37368425	39	5.7	40	87	6	280	24	27	22	25	2.00
37372116--37372287	48	3.6	48	80	0	193	30	20	23	26	1.98
37372263--37372491	42	5.4	42	77	11	173	27	16	23	32	1.96
37372345--37372492	43	3.5	43	81	10	178	27	16	23	31	1.96
37372297--37372491	85	2.3	85	85	2	257	28	16	23	32	1.96
37375219--37375303	44	1.9	44	80	4	100	38	12	20	28	1.89
37375503--37375799	108	2.7	108	89	0	450	35	17	24	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37375495--37375799	55	5.6	54	78	8	325	35	17	24	22	1.95
37379924--37379965	21	2.0	22	90	4	68	42	4	16	35	1.69
37379927--37379972	21	2.2	21	84	7	58	43	4	13	39	1.63
37380039--37380090	26	2.0	26	96	0	95	50	1	26	21	1.59
37382043--37382096	20	2.7	20	91	0	90	24	37	25	12	1.91
37387002--37387109	26	4.2	26	93	0	189	32	7	24	36	1.83
37392825--37392872	25	1.9	25	100	0	96	29	12	20	37	1.90
37399511--37399559	25	2.0	25	100	0	98	32	32	2	32	1.70
37407940--37408009	34	2.1	34	88	0	104	50	11	17	21	1.77
37408504--37408722	46	4.7	47	75	8	162	28	19	28	23	1.98
37411403--37411531	50	2.5	51	89	2	206	34	15	24	26	1.95
37411507--37411624	31	3.8	31	94	0	209	25	19	28	26	1.99
37411642--37411765	47	2.7	46	87	2	167	28	16	26	29	1.97
37411693--37411848	42	3.6	42	87	6	181	30	14	26	28	1.95
37418003--37418178	46	3.8	45	81	10	212	21	21	29	28	1.98
37418000--37418170	93	1.8	93	94	0	306	21	21	29	27	1.98
37426204--37426430	46	4.9	46	90	1	312	22	24	14	39	1.91
37431814--37431914	29	3.5	29	87	2	159	26	10	10	51	1.70
37436871--37436925	3	19.3	3	80	10	62	1	32	0	65	1.03
37436871--37436917	17	2.7	17	83	3	58	2	31	0	65	1.04
37436871--37436923	20	2.7	20	90	0	88	1	32	0	66	1.03
37436870--37436925	17	3.3	16	77	20	53	1	32	0	66	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37437218--37437266	16	3.1	16	82	5	55	2	28	0	69	1.00
37437924--37437965	20	2.2	20	91	4	68	80	2	16	0	0.81
37441375--37441430	28	2.0	28	82	0	67	32	8	0	58	1.29
37441456--37441489	17	2.0	17	88	11	52	26	8	0	64	1.22
37441471--37441545	14	5.3	14	72	12	55	32	4	0	64	1.12
37441522--37441551	12	2.5	12	94	0	51	26	3	0	70	1.03
37441895--37441935	18	2.3	18	95	0	73	31	9	0	58	1.31
37441970--37442019	22	2.3	22	82	6	57	24	2	4	70	1.15
37442045--37442105	21	2.8	22	79	16	65	29	4	0	65	1.13
37457714--37458268	206	2.7	206	90	1	853	30	18	22	28	1.97
37459789--37459844	28	2.0	28	82	6	69	32	10	0	57	1.33
37459885--37459959	14	5.3	14	72	12	55	32	4	0	64	1.12
37459935--37459964	12	2.6	11	90	10	51	26	3	0	70	1.03
37459954--37459993	21	2.0	21	85	5	55	35	2	5	57	1.34
37462320--37462874	206	2.7	206	90	1	853	30	18	22	28	1.97
37464395--37464450	28	2.0	28	82	6	69	32	10	0	57	1.33
37464491--37464565	14	5.3	14	72	12	55	32	4	0	64	1.12
37464541--37464570	12	2.6	11	90	10	51	26	3	0	70	1.03
37464560--37464599	21	2.0	21	85	5	55	35	2	5	57	1.34
37464914--37464954	18	2.3	18	95	0	73	31	9	0	58	1.31
37465065--37465125	21	2.8	22	79	16	65	29	4	0	65	1.13
37466564--37466603	15	2.5	17	76	19	50	65	2	5	27	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37468977--37469039	27	2.3	27	83	5	74	39	26	4	28	1.76
37468990--37469051	27	2.3	28	91	5	101	30	29	4	35	1.78
37469086--37469155	27	2.6	27	82	8	81	42	21	8	27	1.81
37470035--37470206	31	5.5	31	100	0	344	27	26	17	28	1.98
37470230--37470321	42	2.2	42	92	0	148	34	21	14	29	1.93
37470466--37470588	26	4.8	26	92	1	196	26	23	23	26	2.00
37470466--37470588	52	2.4	51	97	2	230	26	23	23	26	2.00
37470638--37470704	20	3.3	20	93	4	109	31	19	10	38	1.85
37471526--37471581	27	2.1	26	83	3	67	37	12	12	37	1.81
37471590--37471686	27	3.6	26	74	10	72	24	8	23	43	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235