genome.fa.s4.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  193  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65693637--65693706	25	2.8	25	91	0	104	25	22	24	27	2.00
65694516--65694616	27	3.7	26	73	12	78	22	17	18	40	1.91
65694613--65694790	27	6.6	27	81	0	149	30	8	20	41	1.82
65694613--65694823	81	2.6	81	80	1	226	30	10	19	39	1.85
65694692--65694823	27	4.9	26	76	8	122	29	12	20	37	1.89
65694822--65695018	27	7.3	27	87	3	254	38	7	25	28	1.83
65694811--65695018	107	1.9	107	85	3	285	37	8	25	28	1.84
65695961--65696045	43	2.0	43	95	0	152	29	41	10	18	1.84
65698393--65698427	13	2.7	13	95	0	61	48	2	0	48	1.16
65698665--65698723	30	1.9	31	86	10	86	27	20	5	47	1.71
65699590--65699642	20	2.7	20	90	0	79	13	32	33	20	1.91
65700377--65700542	53	3.3	49	78	13	137	30	27	16	25	1.97
65700398--65700557	52	3.1	52	80	9	191	31	27	15	25	1.95
65722320--65722353	16	2.2	15	89	5	50	44	0	0	55	0.99
65725516--65725558	22	2.0	22	81	9	52	39	23	23	13	1.90
65730201--65730255	28	2.0	27	92	3	92	41	10	27	20	1.85
65731750--65731866	51	2.3	51	87	0	180	32	16	23	27	1.96
65736786--65736848	20	3.3	20	65	24	55	46	6	23	23	1.75
65736782--65736850	36	1.9	36	96	0	129	44	7	26	21	1.78
65738354--65738475	51	2.4	51	90	0	181	32	13	22	30	1.93
65742335--65742368	7	4.9	7	100	0	68	29	0	55	14	1.40
65742328--65742368	21	2.0	21	90	0	64	31	0	51	17	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65749969--65750048	37	2.2	37	86	4	108	27	31	17	23	1.97
65750179--65750523	47	7.4	47	92	1	516	27	32	9	31	1.88
65750336--65750457	23	5.3	22	63	18	68	27	33	9	29	1.89
65750358--65750435	25	3.2	25	65	17	74	32	34	5	28	1.79
65755485--65755514	13	2.3	13	94	0	51	56	3	13	26	1.52
65757396--65757742	40	8.7	40	98	0	633	23	20	25	30	1.98
65757399--65757786	40	9.7	40	97	0	313	22	20	26	29	1.99
65757395--65757806	80	5.2	80	93	2	623	23	20	26	30	1.98
65764083--65764493	40	10.3	40	98	0	770	22	20	25	32	1.98
65771464--65771586	40	3.1	40	81	5	151	23	21	26	28	1.99
65779423--65779594	40	4.3	40	81	5	188	24	20	26	27	1.99
65779423--65779593	80	2.2	79	85	7	222	24	21	26	28	1.99
65782061--65782108	21	2.3	21	86	13	73	27	6	2	64	1.28
65788874--65788995	23	5.2	23	86	6	165	29	22	20	27	1.98
65788874--65788995	48	2.6	45	83	10	154	29	22	20	27	1.98
65789042--65789112	20	3.5	20	90	0	106	30	19	12	36	1.89
65789149--65789196	25	1.9	25	86	0	69	25	16	25	33	1.96
65790355--65790432	27	2.9	27	81	7	95	21	19	21	37	1.95
65790450--65790903	27	16.8	27	79	5	382	30	9	20	39	1.85
65790561--65790917	81	4.4	81	95	1	601	29	9	21	39	1.85
65790985--65791065	38	2.1	37	82	10	101	37	4	33	24	1.77
65790896--65791031	27	5.0	27	87	0	173	38	8	24	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65791023--65791090	27	2.5	27	83	9	93	36	2	30	29	1.72
65790994--65791069	38	2.0	37	89	2	116	35	3	35	25	1.74
65791086--65791185	27	3.7	27	78	2	85	32	11	17	40	1.84
65796691--65796766	33	2.3	33	93	0	125	31	17	23	27	1.97
65796707--65796780	33	2.2	33	87	0	103	31	18	24	25	1.98
65796816--65797206	194	2.0	194	91	0	638	35	12	20	31	1.90
65800342--65800519	40	4.5	40	88	3	227	24	23	28	23	2.00
65805235--65805354	44	2.8	43	83	5	127	31	27	18	22	1.97
65807920--65807952	12	2.6	13	85	9	50	51	15	9	24	1.72
65811483--65811544	18	2.8	24	68	27	73	25	8	22	43	1.80
65816755--65816846	45	2.0	45	97	0	175	32	25	10	31	1.90
65818262--65818349	46	1.9	46	83	0	113	39	10	15	34	1.82
65823137--65823651	140	3.7	138	85	7	652	46	5	8	40	1.57
65822965--65823651	257	2.6	253	80	12	711	45	5	8	40	1.57
65823646--65823679	17	2.1	17	88	5	52	29	14	0	55	1.40
65825664--65825793	9	13.6	9	67	15	57	58	3	6	32	1.38
65825972--65826029	31	1.9	30	89	3	89	25	1	5	67	1.21
65833254--65833316	24	2.6	24	82	5	74	22	15	33	28	1.95
65840522--65840613	24	3.7	25	72	12	82	21	13	31	33	1.92
65842341--65842532	40	4.8	40	89	3	280	21	24	28	25	1.99
65844759--65844806	24	2.0	24	92	8	80	37	0	27	35	1.57
65845280--65845312	14	2.4	14	94	0	57	33	0	45	21	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65852967--65853025	29	2.0	29	96	0	109	35	22	10	32	1.87
65859871--65859927	30	1.9	30	88	0	87	38	8	22	29	1.85
65861824--65861876	21	2.5	22	78	9	65	58	3	0	37	1.16
65870318--65870377	30	2.0	30	86	0	84	40	6	25	28	1.80
65872616--65872793	27	6.6	27	80	5	162	28	28	15	27	1.96
65872642--65872792	82	1.9	81	88	4	232	27	28	15	27	1.96
65875020--65876153	567	2.0	567	93	0	1948	38	10	17	33	1.84
65886134--65886229	48	2.0	48	100	0	192	39	29	8	22	1.83
65887707--65887746	17	2.4	17	100	0	80	17	17	12	52	1.74
65893869--65894050	90	2.0	92	82	4	226	28	18	24	29	1.98
65898675--65898712	19	2.0	20	89	5	60	26	18	2	52	1.58
65899049--65899086	18	2.1	18	85	9	51	36	5	0	57	1.21
65899529--65899564	16	2.2	16	100	0	72	25	0	36	38	1.56
65899780--65899834	15	3.4	16	80	16	53	50	1	0	47	1.11
65899800--65899834	18	2.0	17	88	5	52	54	0	0	45	0.99
65899826--65899856	16	2.0	16	93	6	55	51	6	0	41	1.27
65900096--65900180	22	3.7	22	82	14	118	38	9	15	36	1.80
65900078--65900203	47	2.7	47	100	0	252	39	7	17	34	1.79
65900078--65900203	25	5.3	25	78	18	160	39	7	17	34	1.79
65909915--65909955	12	3.7	12	75	18	52	51	19	19	9	1.74
65909911--65909963	21	2.5	21	100	0	106	54	16	20	7	1.66
65921680--65921942	40	6.6	39	81	7	259	25	26	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65921680--65921942	79	3.3	80	85	6	326	25	26	21	27	1.99
65929709--65929918	39	5.3	39	91	2	307	25	27	21	25	1.99
65929709--65929968	78	3.3	79	82	10	286	25	27	21	26	1.99
65942097--65942167	30	2.3	30	80	7	81	19	4	5	70	1.24
65942603--65942632	15	2.0	15	93	0	51	36	0	6	56	1.26
65949138--65949169	11	2.9	11	95	0	55	34	9	9	46	1.68
65950204--65950538	48	6.9	48	80	2	321	28	19	27	24	1.98
65950204--65950482	144	1.9	144	91	0	450	27	17	28	25	1.98
65955192--65955242	25	2.0	25	88	0	75	31	25	23	19	1.98
65959816--65959941	46	2.7	46	91	0	198	22	20	26	30	1.98
65966902--65967071	46	3.7	46	80	10	202	22	18	28	30	1.98
65966896--65967066	93	1.8	93	91	0	279	21	19	29	29	1.98
65972225--65972254	11	2.7	11	89	0	51	56	6	6	30	1.51
65973708--65974182	177	2.7	177	87	0	689	30	17	19	32	1.95
65974859--65975098	46	5.2	46	82	4	225	24	26	16	33	1.96
65974859--65975098	92	2.6	92	81	3	279	24	26	16	33	1.96
65978143--65978367	80	2.8	79	82	3	254	26	27	20	24	1.99
65978145--65978367	40	5.6	40	85	3	227	26	27	21	25	1.99
65978299--65978376	40	1.9	41	82	10	97	26	28	21	23	1.99
65984997--65985026	11	2.7	11	89	0	51	56	6	6	30	1.51
65989056--65989202	40	3.7	40	85	3	188	34	27	19	19	1.96
65995350--65995649	108	2.8	108	79	2	307	44	16	22	17	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65998623--65998687	29	2.2	29	81	5	69	53	10	3	32	1.51
66007435--66007583	40	3.7	40	89	5	221	27	27	21	23	1.99
66012332--66012538	53	3.8	53	74	6	193	37	18	24	19	1.94
66020580--66020820	39	6.1	39	83	6	240	24	27	21	26	1.99
66020599--66020820	79	2.8	79	84	9	267	24	27	22	25	2.00
66020599--66020820	118	1.9	118	82	10	285	24	27	22	25	2.00
66025047--66025310	40	6.7	40	87	5	342	26	26	21	25	2.00
66027185--66027224	20	1.9	22	90	10	66	22	10	10	57	1.61
66027347--66027479	67	2.0	67	89	0	203	30	31	16	21	1.95
66027451--66027586	58	2.4	54	83	7	157	31	25	17	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235