genome.fa.s4.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  152  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51204928--51204971	21	2.1	21	91	8	72	38	13	9	38	1.77
51214223--51214396	46	3.7	46	78	6	181	24	28	17	29	1.98
51221660--51221895	50	4.8	50	73	7	196	30	15	28	25	1.95
51222289--51222368	41	2.0	41	97	0	151	27	6	26	40	1.80
51227775--51227799	13	1.9	13	100	0	50	32	4	24	40	1.73
51228922--51228964	22	2.0	22	90	0	68	37	23	20	18	1.94
51229383--51229755	27	13.8	27	77	5	270	30	10	19	40	1.85
51229576--51229781	80	2.6	81	81	9	226	29	10	20	39	1.86
51229630--51229798	27	6.3	27	79	8	141	30	10	20	39	1.86
51229384--51229806	81	5.2	80	73	7	230	30	10	19	39	1.85
51229791--51229871	27	3.0	27	92	0	126	27	22	19	30	1.98
51237486--51237544	6	10.0	6	76	8	59	3	16	3	76	1.06
51240551--51240631	30	2.7	30	90	0	117	40	4	19	34	1.73
51245276--51245318	21	2.0	21	86	8	61	62	0	11	25	1.29
51247052--51247140	46	1.9	48	82	8	114	30	21	6	41	1.79
51251237--51251274	14	2.9	13	81	11	51	57	10	13	18	1.63
51253457--51254303	423	2.0	423	100	0	1694	28	14	20	36	1.92
51258463--51258505	5	7.8	5	80	19	50	74	0	4	20	1.00
51283803--51283845	22	1.9	23	85	4	61	20	11	51	16	1.75
51298392--51298506	42	2.8	42	76	9	110	35	27	12	24	1.91
51317364--51317437	20	3.5	20	67	25	62	47	18	10	22	1.80
51317811--51317974	39	4.2	39	92	0	274	28	26	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51325794--51325928	40	3.4	40	91	0	216	30	28	18	22	1.97
51330426--51330496	35	2.0	35	100	0	142	28	8	16	46	1.76
51343761--51343825	34	1.9	34	83	0	85	26	29	21	23	1.99
51348370--51348415	24	1.9	24	82	8	58	17	21	23	36	1.94
51349816--51349880	27	2.4	27	86	0	85	24	16	21	36	1.94
51349859--51350103	27	9.2	27	85	2	289	29	8	22	39	1.84
51349833--51350103	80	3.4	81	81	5	291	28	9	22	39	1.85
51349833--51350103	53	5.1	54	81	4	282	28	9	22	39	1.85
51349865--51350070	107	1.9	107	84	2	270	29	9	20	40	1.84
51354562--51354624	27	2.3	27	82	17	78	39	14	14	31	1.86
51354633--51354845	27	7.9	27	85	2	223	29	23	7	39	1.81
51354795--51355047	27	9.3	27	75	10	149	37	19	9	33	1.83
51354633--51354843	81	2.6	81	81	4	255	28	24	7	39	1.81
51354822--51355074	81	3.1	78	73	13	206	37	19	9	32	1.85
51355103--51355170	27	2.5	27	85	4	84	32	16	26	25	1.96
51355980--51356049	25	2.8	25	93	0	113	27	25	22	24	2.00
51355979--51356074	25	3.9	24	81	9	95	28	23	22	25	2.00
51355980--51356074	50	1.9	50	80	8	113	28	24	23	24	2.00
51356196--51356287	42	2.2	42	92	0	148	29	14	21	34	1.93
51370123--51370200	29	2.7	29	87	2	102	26	29	16	26	1.97
51381543--51381692	67	2.2	67	81	8	171	32	17	28	21	1.96
51381567--51381750	67	2.8	64	77	8	194	29	17	29	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51389951--51390030	25	3.2	25	77	7	81	27	18	20	33	1.96
51393386--51393469	43	2.0	43	80	4	98	22	16	27	33	1.96
51407458--51407638	93	1.9	93	95	0	326	31	20	14	33	1.93
51410366--51410452	26	3.4	25	87	9	113	22	21	24	31	1.99
51410379--51410451	26	2.8	26	97	0	137	23	21	26	28	1.99
51417978--51418050	26	2.8	27	91	6	123	24	23	23	28	1.99
51418111--51418144	9	3.6	9	85	14	50	41	20	2	35	1.68
51418100--51418156	20	2.8	20	91	0	96	36	19	10	33	1.86
51418100--51418157	11	5.6	11	76	15	61	36	18	10	34	1.85
51418203--51418250	25	1.9	25	86	0	69	27	14	22	35	1.93
51424287--51424325	21	1.9	20	84	5	51	30	7	15	46	1.74
51432703--51432786	43	2.0	43	90	0	132	22	21	29	26	1.99
51443824--51443856	17	1.9	17	93	0	57	12	39	0	48	1.40
51452201--51452245	22	2.0	22	95	0	81	35	8	24	31	1.86
51456932--51457145	46	4.6	46	79	5	232	28	20	28	23	1.99
51456932--51457195	47	5.7	47	78	9	229	29	19	27	23	1.98
51456925--51457196	94	2.9	93	81	7	293	29	19	27	23	1.98
51459358--51459396	21	1.9	20	84	5	51	23	30	28	17	1.97
51462139--51462172	11	3.1	11	95	0	59	64	14	8	11	1.49
51467366--51467400	11	3.2	11	91	0	61	65	11	8	14	1.46
51469519--51469543	10	2.5	10	100	0	50	20	0	8	72	1.10
51469662--51469970	162	1.9	162	86	2	442	35	10	16	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51470899--51470933	12	2.9	12	95	0	61	8	28	40	22	1.84
51474542--51474665	27	4.6	27	75	7	108	32	13	26	27	1.94
51474540--51474665	53	2.4	54	81	4	148	33	13	26	26	1.93
51483526--51483663	69	2.0	69	95	0	249	36	15	16	31	1.91
51486836--51486866	15	2.1	15	100	0	62	38	6	32	22	1.80
51487856--51487917	24	2.5	26	78	10	83	72	3	9	14	1.23
51488838--51488935	30	3.4	27	69	24	58	70	4	19	6	1.25
51488807--51488860	21	2.6	21	82	11	67	75	0	22	1	0.89
51488809--51488938	6	20.0	6	68	23	52	72	3	20	4	1.16
51499479--51499548	28	2.5	28	88	9	99	31	27	14	27	1.95
51507268--51507337	28	2.5	28	88	9	99	31	27	14	27	1.95
51512223--51512406	48	3.8	48	74	2	172	23	24	22	28	1.99
51512184--51512407	96	2.3	96	89	1	333	25	24	21	28	1.99
51514849--51514883	11	3.2	11	87	0	52	11	11	17	60	1.59
51521242--51521414	47	3.7	47	80	8	151	23	19	29	27	1.98
51530666--51530734	18	3.8	18	77	7	77	40	15	2	40	1.63
51531767--51531804	18	2.2	18	85	4	51	13	44	26	15	1.83
51532686--51532732	23	2.0	22	84	8	58	40	31	4	23	1.74
51535252--51535388	6	22.3	6	74	15	120	47	16	16	18	1.83
51535272--51535388	31	3.6	31	80	13	126	47	17	17	18	1.84
51535266--51535388	37	3.5	37	80	13	150	47	17	17	18	1.83
51535508--51535615	27	4.0	26	82	5	108	37	20	20	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51536173--51536580	27	15.2	27	80	5	380	26	18	17	37	1.93
51536172--51536547	80	4.7	81	84	3	454	25	19	18	36	1.94
51536172--51536546	107	3.5	108	81	4	429	25	20	17	36	1.94
51536535--51536720	27	7.0	27	79	2	151	33	9	17	39	1.83
51536361--51536633	134	2.0	134	79	5	293	27	17	17	36	1.93
51536541--51536746	80	2.6	80	83	1	225	32	9	17	40	1.83
51536601--51536767	27	6.3	27	75	11	105	29	9	20	39	1.85
51536701--51536767	26	2.6	25	79	15	82	26	8	20	43	1.82
51537610--51537693	40	2.1	40	97	2	161	25	32	9	33	1.88
51540522--51540646	27	4.6	27	84	0	178	29	19	10	40	1.84
51540522--51540673	27	5.6	27	83	0	169	30	19	10	38	1.86
51540522--51540671	81	1.9	81	85	0	210	31	19	10	39	1.84
51540522--51540673	54	2.8	54	89	0	223	30	19	10	38	1.86
51540666--51540861	27	7.3	27	88	0	275	35	19	20	24	1.96
51540639--51540860	54	4.1	51	85	8	230	35	18	19	25	1.95
51540666--51540857	81	2.4	81	91	0	314	35	18	21	24	1.96
51541745--51541778	18	1.9	17	88	5	50	52	14	11	20	1.73
51541766--51542020	6	41.3	6	73	14	189	47	15	16	20	1.83
51541808--51542020	31	6.2	36	72	20	181	46	15	16	20	1.83
51541766--51542026	136	1.9	136	99	0	513	46	15	17	20	1.84
51541982--51542140	81	2.0	81	98	0	309	39	25	13	20	1.90
51542221--51542328	27	4.0	26	80	5	108	37	19	22	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51542342--51542417	32	2.4	31	80	6	80	35	23	19	21	1.96
51544105--51544160	25	2.2	25	100	0	112	35	12	23	28	1.91
51544589--51545467	12	71.2	12	62	18	218	45	14	18	20	1.85
51544623--51545467	31	27.3	31	91	0	1366	45	14	18	20	1.85
51544623--51545461	62	13.5	62	99	0	1651	45	14	18	20	1.85
51544718--51544775	19	3.4	19	65	30	58	46	17	17	18	1.84
51545587--51545694	27	4.0	26	84	5	108	37	22	21	18	1.94
51545850--51545910	22	2.8	22	74	0	59	32	21	26	19	1.97
51546273--51546692	27	15.6	27	87	2	540	24	20	18	36	1.95
51546273--51546692	81	5.2	81	89	1	610	24	20	18	36	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235