genome.fa.s4.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  190  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64679400--64679449	20	2.5	20	83	3	55	36	14	2	48	1.55
64684019--64684058	21	2.0	20	85	5	53	30	12	2	55	1.50
64688113--64688203	46	2.0	46	97	0	173	31	20	16	30	1.95
64688249--64688467	40	5.5	40	81	5	250	27	27	20	25	1.99
64691761--64691979	40	5.5	40	83	5	268	26	27	20	25	1.99
64691761--64691981	79	2.8	80	84	7	281	26	27	20	25	1.99
64699985--64700110	40	3.1	41	88	6	179	26	29	21	23	1.99
64706912--64707003	46	2.0	46	95	0	166	15	21	13	50	1.78
64712224--64712257	17	2.0	17	88	0	50	32	2	8	55	1.45
64712674--64712860	99	1.9	99	96	0	347	25	20	26	28	1.99
64712679--64712865	49	3.8	49	81	6	243	26	19	26	28	1.99
64715138--64715315	27	6.6	27	84	3	205	29	28	15	26	1.96
64715159--64715314	82	1.9	81	88	3	233	29	28	15	26	1.96
64724817--64724898	39	2.1	39	95	0	146	25	31	23	19	1.98
64732883--64732910	14	2.0	14	100	0	56	14	42	14	28	1.84
64736539--64736568	15	2.0	15	93	0	51	3	13	33	50	1.58
64738694--64738794	28	3.6	27	77	7	112	30	35	17	15	1.92
64738666--64738796	57	2.2	58	88	6	185	31	35	16	16	1.91
64741045--64741195	39	3.9	39	87	0	221	25	30	22	21	1.99
64744067--64744235	41	4.0	42	77	11	157	34	26	16	23	1.95
64744067--64744235	44	4.0	42	77	12	166	34	26	16	23	1.95
64748977--64749101	29	4.3	29	85	1	162	24	12	31	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64757203--64757295	5	18.0	5	76	18	68	18	5	1	75	1.05
64757202--64757268	6	11.5	6	80	12	61	14	2	1	80	0.90
64766368--64766406	19	2.1	19	85	0	51	43	10	20	25	1.83
64769128--64769161	17	2.1	16	88	5	50	29	26	17	23	1.96
64770893--64770985	40	2.3	39	81	3	96	30	24	15	30	1.95
64785089--64785249	42	3.8	42	73	13	116	32	25	18	24	1.97
64788717--64788749	17	1.9	17	88	11	50	63	18	3	15	1.43
64791390--64791574	40	4.6	40	81	3	219	24	24	28	23	2.00
64795054--64795142	42	2.1	43	97	2	171	33	14	23	28	1.94
64802039--64802205	84	2.0	84	97	0	316	20	21	22	35	1.96
64807328--64807435	53	2.0	56	81	5	132	29	34	17	18	1.94
64811368--64811474	23	4.7	23	81	4	117	32	26	17	23	1.97
64811368--64811474	46	2.3	46	87	3	144	32	26	17	23	1.97
64819973--64820265	50	5.8	49	75	9	243	25	15	26	31	1.96
64820018--64820254	101	2.4	99	80	5	253	25	15	27	31	1.96
64819976--64820271	151	1.9	153	86	2	418	25	15	27	31	1.96
64832583--64832646	34	1.9	33	84	9	85	31	28	23	17	1.97
64839875--64840039	83	2.0	83	92	0	276	45	16	12	26	1.82
64840624--64840652	14	2.1	14	100	0	58	44	20	13	20	1.85
64841215--64841300	43	2.0	43	81	4	102	26	26	19	26	1.99
64843819--64843873	27	2.0	28	86	10	78	32	25	21	20	1.97
64844106--64844177	32	2.2	32	82	0	90	31	23	20	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64844647--64844734	27	3.3	25	82	9	95	31	13	14	39	1.85
64844658--64844832	27	6.5	26	77	7	136	30	12	20	37	1.89
64844690--64844830	53	2.6	54	79	1	158	31	11	19	38	1.87
64863733--64863788	28	2.0	28	86	6	78	32	25	21	21	1.98
64864023--64864085	32	2.0	32	83	0	81	36	20	19	23	1.95
64869279--64869505	47	4.8	49	79	7	136	35	16	22	25	1.94
64869470--64869687	54	4.0	54	81	4	224	38	16	23	22	1.93
64874934--64875051	47	2.5	47	92	0	200	35	13	23	27	1.92
64875042--64875230	55	3.5	53	79	11	197	36	17	23	22	1.95
64875036--64875230	54	3.6	54	78	10	200	36	16	23	23	1.94
64881563--64881720	79	2.0	79	100	0	316	27	2	22	46	1.65
64890280--64890355	34	2.2	34	86	4	100	31	26	21	21	1.98
64890693--64890755	30	2.1	30	90	0	99	57	12	4	25	1.55
64901133--64901569	220	2.0	220	97	0	820	29	24	18	28	1.98
64906281--64906458	27	6.6	27	83	3	205	26	15	28	29	1.96
64906282--64906437	82	1.9	81	88	3	233	26	15	28	29	1.96
64906278--64906458	82	2.2	81	83	2	229	27	15	27	29	1.96
64910616--64910957	185	1.8	186	95	0	623	23	27	26	22	2.00
64921293--64921345	26	2.0	26	100	0	106	30	3	15	50	1.61
64922026--64922057	12	2.6	13	90	9	50	18	6	25	50	1.70
64952573--64952684	6	18.3	6	68	17	70	46	14	19	19	1.84
64952594--64952675	43	1.9	43	83	14	107	43	14	21	19	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64953299--64953388	27	3.3	27	81	9	103	22	21	20	36	1.95
64954872--64955052	92	2.0	92	96	0	335	35	18	8	38	1.81
64956663--64956784	61	2.0	61	91	3	201	34	13	22	29	1.93
64956722--64957359	220	2.9	220	90	0	1008	33	16	21	28	1.95
64957391--64957576	43	4.3	43	64	20	116	28	15	25	30	1.96
64957197--64957621	131	3.2	131	93	0	679	31	16	24	28	1.96
64957545--64958395	280	3.0	279	87	3	1207	32	16	22	27	1.96
64958065--64958208	72	2.0	72	91	0	234	27	20	21	29	1.98
64957561--64958737	292	4.0	291	85	4	1446	32	17	21	28	1.96
64958389--64958626	89	2.7	88	87	2	318	33	15	21	29	1.95
64958168--64958811	309	2.1	309	88	1	950	33	17	20	29	1.95
64958471--64959025	220	2.5	220	87	2	832	33	17	20	28	1.95
64958784--64959276	248	2.0	249	85	2	668	33	17	20	28	1.95
64959030--64959887	220	3.9	220	88	1	1229	32	17	20	28	1.96
64959738--64960153	133	3.2	133	89	5	628	35	18	20	25	1.95
64959881--64960068	43	4.3	43	64	17	118	35	19	19	25	1.95
64959257--64961294	703	2.9	702	91	1	3206	33	17	21	27	1.96
64959952--64960595	220	2.9	220	89	1	961	33	17	21	27	1.96
64960441--64960887	133	3.4	132	89	5	645	35	16	21	26	1.94
64960176--64961079	484	1.9	484	89	1	1400	33	17	21	27	1.96
64960396--64960887	264	1.9	264	87	2	729	35	16	21	27	1.94
64960660--64961600	220	4.3	220	86	2	1262	34	17	20	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64961449--64961596	49	3.2	49	66	23	147	33	14	22	29	1.94
64961481--64961617	43	3.1	43	64	24	113	30	13	21	34	1.92
64961234--64962183	309	3.1	309	95	0	1675	33	16	21	28	1.95
64961454--64961653	89	2.2	89	100	0	400	33	14	22	30	1.94
64961017--64962748	529	3.3	526	79	7	2117	33	17	21	28	1.96
64961758--64961905	49	3.2	49	66	23	147	33	14	22	29	1.94
64961790--64961926	43	3.1	43	64	24	113	30	13	21	34	1.92
64961763--64961962	89	2.2	89	100	0	400	33	14	22	30	1.94
64961852--64962661	220	3.7	220	90	0	1296	33	17	21	28	1.96
64962512--64962922	87	4.7	87	95	1	680	32	15	21	29	1.95
64962878--64963649	394	2.0	392	90	1	1125	34	16	20	28	1.95
64962813--64963290	220	2.2	220	82	0	598	34	16	20	28	1.94
64963109--64963464	174	2.0	174	86	1	489	33	16	20	28	1.95
64962064--64964051	701	2.8	692	79	6	2025	33	16	21	28	1.95
64963384--64963567	87	2.1	89	84	8	234	35	16	20	27	1.94
64963579--64963726	77	1.9	77	90	0	233	29	21	22	27	1.99
64963650--64964188	220	2.4	219	88	0	772	33	17	22	26	1.96
64964794--64964882	45	2.0	44	93	2	151	30	16	21	31	1.96
64965457--64965566	55	2.0	55	96	0	202	40	19	15	24	1.90
64965476--64965566	27	3.3	27	69	19	89	39	19	16	24	1.92
64970532--64970927	99	4.0	99	94	0	675	26	15	24	33	1.95
64971919--64972331	206	2.0	206	99	0	817	27	10	20	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64972355--64972498	72	2.0	72	98	0	279	29	27	12	30	1.93
64974200--64974339	53	2.6	55	82	2	167	21	23	17	37	1.94
64978975--64979015	22	1.9	22	90	5	66	12	39	26	21	1.89
64991497--64991595	43	2.3	43	84	10	123	23	16	25	35	1.95
64991717--64991789	38	1.9	38	85	0	101	46	5	16	31	1.70
64993580--64993805	48	4.7	48	80	0	272	27	26	16	29	1.97
65002189--65002360	67	2.7	64	76	7	195	28	16	29	25	1.97
65010708--65010734	14	1.9	14	100	0	54	59	11	7	22	1.56
65012232--65012502	142	1.9	141	84	5	359	23	28	19	28	1.98
65012234--65012502	49	5.6	48	73	9	219	23	28	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235