genome.fa.s4.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  155  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52214894--52215042	75	2.0	75	79	10	162	60	2	5	32	1.31
52215203--52215309	9	11.7	9	72	16	69	27	1	1	69	1.09
52215200--52215309	37	3.0	36	82	2	123	27	1	1	69	1.09
52215249--52215302	11	4.5	11	76	17	54	24	1	0	74	0.92
52215250--52215299	26	1.9	26	91	0	82	24	2	0	74	0.93
52215250--52215311	26	2.3	25	86	10	79	25	1	0	72	0.94
52218647--52218798	52	2.9	52	81	2	162	23	15	30	30	1.95
52231838--52231870	11	2.9	12	86	13	52	33	0	0	66	0.92
52231993--52232052	30	2.0	30	90	6	95	58	8	3	30	1.44
52232968--52233006	20	2.0	20	89	0	60	61	0	5	33	1.18
52233172--52233252	25	3.2	24	76	8	74	37	2	2	58	1.25
52233215--52233270	23	2.3	25	87	6	80	37	1	5	55	1.33
52233279--52233339	23	2.7	23	75	14	63	52	0	1	45	1.10
52237389--52237427	20	2.0	20	85	10	53	35	20	0	43	1.52
52244138--52245294	40	28.9	40	97	0	2091	25	25	22	26	2.00
52245679--52245757	29	2.7	29	86	5	106	27	32	15	24	1.95
52248907--52248962	28	2.0	29	85	3	78	23	46	17	12	1.82
52271393--52271452	17	3.6	16	74	17	50	26	28	10	35	1.89
52274033--52274062	12	2.5	12	94	0	51	16	20	0	63	1.31
52274187--52274243	5	11.0	5	76	14	53	1	15	3	78	0.96
52274191--52274239	26	1.9	25	84	12	64	2	14	4	79	0.97
52274185--52274254	20	3.3	20	74	18	54	2	17	2	77	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52276570--52276600	14	2.2	14	94	0	53	74	9	0	16	1.07
52278696--52278845	27	5.6	27	86	6	205	28	13	20	38	1.90
52278696--52278849	81	1.9	81	89	2	238	28	14	19	37	1.92
52282620--52282670	24	2.1	24	96	0	93	19	25	23	31	1.98
52282625--52282682	24	2.5	24	88	2	82	20	29	18	31	1.97
52282658--52282750	45	2.1	44	87	4	141	29	24	16	30	1.96
52282907--52282938	15	2.1	15	94	0	55	28	6	6	59	1.46
52285224--52285342	29	4.2	29	79	10	129	29	29	11	29	1.92
52285410--52285445	19	1.9	19	94	5	65	16	47	16	19	1.83
52285417--52285456	19	2.1	19	85	0	53	15	42	17	25	1.88
52289610--52289716	29	3.7	29	75	6	110	25	31	14	28	1.95
52289798--52289837	9	4.3	9	84	6	53	15	37	20	27	1.92
52289796--52289833	19	2.1	18	90	5	58	18	34	15	31	1.92
52289946--52289998	24	2.2	24	86	6	72	11	16	16	54	1.70
52303360--52303391	14	2.4	13	90	10	55	18	6	12	62	1.50
52315803--52315898	48	2.0	48	100	0	192	27	31	16	25	1.97
52326849--52326917	28	2.4	29	85	2	95	34	23	23	18	1.96
52327023--52327087	28	2.3	28	92	5	105	29	7	29	33	1.85
52334693--52334794	28	3.6	28	86	1	132	31	21	25	21	1.98
52334900--52334964	28	2.3	28	92	5	105	29	7	29	33	1.85
52338323--52338488	49	3.4	49	80	5	199	31	27	15	25	1.96
52341322--52341478	27	5.8	27	93	0	242	31	25	6	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52341311--52341507	54	3.6	54	86	0	232	33	24	6	35	1.82
52341277--52341624	27	12.9	27	82	3	182	36	23	6	32	1.82
52341276--52341674	54	7.4	54	77	3	183	37	22	7	33	1.81
52341298--52341506	81	2.6	81	83	0	274	33	24	6	35	1.82
52341713--52341792	27	3.0	27	80	10	78	35	18	22	23	1.96
52342587--52342656	25	2.8	25	93	0	113	27	25	22	24	2.00
52342586--52342681	25	3.9	24	81	9	95	28	23	22	25	2.00
52342587--52342681	50	1.9	50	80	8	113	28	24	23	24	2.00
52342875--52342948	31	2.4	31	90	2	114	28	18	25	27	1.98
52347196--52347221	13	2.0	13	100	0	52	15	23	38	23	1.92
52379355--52379469	29	4.0	29	85	2	144	28	27	13	29	1.95
52379355--52379469	57	2.0	57	86	3	160	28	27	13	29	1.95
52381530--52381589	30	2.0	31	83	3	77	36	6	26	30	1.82
52381925--52382047	46	2.6	47	82	5	142	34	15	21	27	1.94
52390146--52390256	58	1.9	57	87	5	161	25	14	30	29	1.95
52390133--52390246	29	4.0	29	84	6	144	26	14	29	29	1.95
52395521--52395636	49	2.4	49	78	11	130	24	26	18	30	1.98
52403447--52403780	111	3.0	111	96	0	623	46	4	15	33	1.65
52409871--52409922	27	2.0	26	88	3	77	15	26	23	34	1.94
52409961--52410020	27	2.3	26	82	2	66	21	21	20	36	1.95
52411754--52411783	11	2.6	11	94	5	51	80	3	6	10	1.01
52416072--52416291	49	4.6	49	73	11	188	25	28	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52416263--52416386	46	2.7	44	81	7	142	24	29	18	27	1.98
52419632--52419839	80	2.6	80	88	4	287	24	24	26	24	2.00
52419632--52419827	40	4.9	40	79	2	187	24	24	26	24	2.00
52428496--52428667	79	2.2	79	82	3	211	24	21	28	25	1.99
52428443--52428665	40	5.6	39	80	8	200	25	21	27	25	1.99
52428523--52428700	79	2.2	80	81	2	198	24	21	28	24	1.99
52436406--52436801	40	10.2	39	83	10	458	26	20	29	24	1.99
52436484--52436538	28	2.0	28	85	0	74	29	20	27	23	1.99
52436406--52436738	108	3.0	109	86	10	481	26	19	29	24	1.99
52441356--52441434	31	2.5	31	93	0	131	26	22	18	31	1.97
52441458--52441549	42	2.2	42	92	0	148	34	21	14	29	1.93
52441695--52441816	26	4.8	26	86	1	167	27	23	22	25	2.00
52441699--52441812	52	2.2	51	92	3	185	28	24	23	22	1.99
52442599--52442681	27	3.1	26	86	5	103	21	24	21	32	1.98
52442621--52442681	27	2.3	27	94	2	106	19	26	21	32	1.97
52442621--52442697	26	2.9	27	86	9	106	20	23	20	35	1.96
52442746--52443051	27	11.3	27	77	8	142	31	9	19	38	1.85
52442739--52442989	54	4.6	53	76	10	172	30	10	19	39	1.85
52442832--52443024	54	3.6	53	79	4	181	29	9	21	40	1.84
52443004--52443132	27	4.8	27	91	0	195	41	10	20	27	1.85
52443012--52443132	54	2.2	54	97	0	224	42	10	21	25	1.85
52455295--52455429	64	2.1	64	86	5	184	32	10	17	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52458573--52458646	24	3.1	24	84	0	103	24	10	31	33	1.90
52464650--52464713	31	2.1	31	87	0	92	25	21	15	37	1.93
52464906--52465049	24	6.0	24	88	8	213	27	21	20	30	1.98
52465107--52465163	9	5.9	9	73	15	51	35	21	8	35	1.84
52465103--52465165	20	3.2	20	95	0	117	31	19	12	36	1.89
52472763--52472826	31	2.1	31	90	0	101	25	23	15	35	1.94
52473019--52473844	47	17.5	47	98	1	1557	27	21	20	29	1.98
52473902--52473958	9	5.9	9	73	15	51	35	21	8	35	1.84
52473898--52473960	20	3.2	20	95	0	117	31	19	12	36	1.89
52473997--52474044	25	1.9	25	86	0	69	25	16	25	33	1.96
52486238--52486378	64	2.2	64	87	2	194	34	11	16	38	1.84
52490114--52490200	24	3.6	25	84	6	117	31	33	16	19	1.94
52491518--52491551	17	2.0	17	88	0	50	41	5	0	52	1.25
52495583--52495710	28	4.5	28	86	2	166	29	12	25	32	1.92
52495583--52495710	57	2.2	57	87	2	177	29	12	25	32	1.92
52501085--52501217	24	5.5	24	82	0	131	33	31	13	21	1.92
52502535--52502568	17	2.0	17	94	0	59	38	5	0	55	1.24
52508185--52508222	19	2.0	20	85	15	53	39	23	0	36	1.55
52508451--52508621	93	1.8	93	89	2	272	30	28	19	21	1.97
52508446--52508618	46	3.7	47	77	10	194	31	27	19	21	1.97
52513572--52513647	39	1.9	39	97	0	143	23	30	19	26	1.98
52515793--52515830	19	2.0	20	85	15	53	39	23	0	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52516058--52516179	46	2.7	46	92	0	190	30	27	20	21	1.98
52534396--52534489	47	2.0	47	100	0	188	36	27	21	14	1.93
52538324--52538375	27	2.0	26	84	3	68	34	21	26	17	1.95
52545643--52545702	27	2.3	26	85	2	75	35	20	23	21	1.96
52549368--52549503	24	5.7	24	79	3	123	25	13	27	33	1.93
52549596--52549725	24	5.4	24	77	7	104	34	28	12	24	1.92
52549596--52549725	48	2.7	48	78	2	118	34	28	12	24	1.92
52553103--52553210	54	2.0	54	89	3	164	27	12	11	49	1.74
52554527--52554556	10	3.0	10	100	0	60	40	0	20	40	1.52
52555853--52555889	18	2.1	19	85	10	51	10	29	43	16	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235