genome.fa.s4.2.7.7.80.10.50.1000.189.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  189  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64407739--64407854	57	2.0	57	96	0	214	39	12	9	37	1.76
64416025--64416097	31	2.4	30	79	4	83	35	12	12	39	1.80
64421431--64421464	16	2.1	17	94	5	61	58	0	11	29	1.33
64423931--64424010	41	1.9	42	85	7	110	20	28	25	26	1.99
64424106--64425448	275	4.9	275	87	7	2098	41	14	7	36	1.74
64424106--64425448	552	2.4	542	91	5	2082	41	14	7	36	1.74
64426744--64426796	3	19.0	3	79	14	60	35	0	1	62	1.06
64426744--64426796	16	3.2	16	78	5	61	35	0	1	62	1.06
64433525--64433577	26	2.0	27	85	7	74	28	15	18	37	1.91
64446406--64446484	31	2.5	31	95	0	140	30	26	16	26	1.97
64446508--64446599	42	2.2	42	92	0	148	36	22	13	27	1.91
64446744--64446891	26	5.8	26	92	0	230	28	23	22	25	1.99
64446941--64447016	20	3.9	20	86	8	104	32	19	10	36	1.86
64446941--64446996	11	5.5	11	75	16	66	30	19	12	37	1.89
64447714--64447780	27	2.5	27	79	11	68	25	20	17	35	1.95
64447808--64448140	27	12.3	27	77	4	231	30	8	21	39	1.83
64447808--64448126	81	3.9	81	77	4	259	30	8	20	40	1.82
64447808--64448167	54	6.6	54	75	5	260	31	8	20	38	1.83
64447921--64448167	134	1.8	134	79	1	289	31	9	21	38	1.85
64448119--64448327	54	3.9	54	85	2	285	40	9	21	29	1.83
64448119--64448327	81	2.6	81	87	0	310	40	9	21	29	1.83
64448119--64448305	27	6.9	27	86	0	266	40	8	21	29	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64448119--64448327	27	7.7	27	85	0	256	40	9	21	29	1.83
64453474--64453647	43	4.1	43	80	5	183	31	26	14	27	1.95
64458052--64458791	47	15.8	45	73	11	467	28	19	29	22	1.98
64458052--64458790	95	7.9	95	79	7	746	28	19	29	22	1.98
64458055--64458792	376	2.0	376	97	0	1404	28	19	29	22	1.98
64466026--64466433	47	8.7	46	72	15	225	27	19	29	23	1.98
64466072--64466380	91	3.4	91	76	9	311	26	19	29	24	1.98
64466025--64466434	185	2.2	187	85	1	529	28	19	29	23	1.98
64474230--64474266	20	1.9	20	88	5	58	40	0	8	51	1.32
64476459--64477513	46	23.0	46	97	0	1873	37	15	23	22	1.93
64482401--64482442	18	2.3	18	87	0	66	73	2	14	9	1.18
64482435--64482474	21	2.0	20	85	5	53	55	2	32	10	1.47
64491143--64491226	43	2.0	43	85	0	114	22	29	16	30	1.96
64493046--64493192	43	3.4	43	75	5	127	35	23	12	27	1.92
64493686--64493742	28	2.0	29	86	3	80	28	22	3	45	1.69
64498144--64498189	21	2.2	21	100	0	92	56	6	8	28	1.54
64499169--64499208	21	2.0	20	85	5	53	42	20	0	37	1.52
64500732--64500859	47	2.7	47	84	4	152	34	25	14	25	1.94
64506743--64506993	63	4.0	63	98	0	484	35	7	9	47	1.64
64507224--64507272	22	2.2	22	81	0	62	34	28	20	16	1.94
64510403--64510434	6	5.3	6	92	0	55	46	12	18	21	1.82
64511281--64511319	15	2.5	16	87	4	53	5	23	2	69	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64518091--64518150	5	11.4	5	82	10	75	20	1	76	0	0.86
64518080--64518147	33	2.1	32	89	5	109	25	2	70	0	1.00
64524866--64524924	29	2.0	29	96	0	109	27	6	38	27	1.81
64530234--64530310	39	1.9	39	86	2	109	27	22	25	24	2.00
64530196--64530338	40	3.6	39	78	7	130	25	23	27	24	2.00
64538245--64538429	79	2.3	81	84	7	236	24	21	27	26	1.99
64538245--64538429	40	4.7	40	82	6	216	24	21	27	26	1.99
64538246--64538462	79	2.7	77	81	10	206	25	21	27	25	1.99
64547894--64548015	42	2.9	42	88	2	174	31	25	17	26	1.97
64552069--64552325	47	5.5	46	80	5	198	33	17	24	23	1.96
64552207--64552367	47	3.4	47	93	0	277	34	14	24	26	1.94
64552358--64552541	55	3.5	53	83	6	203	35	18	23	21	1.95
64552358--64552555	53	3.7	54	83	6	215	35	18	23	22	1.95
64558263--64558357	42	2.3	42	98	0	181	30	24	14	30	1.95
64562029--64562065	19	1.9	19	94	0	65	37	16	13	32	1.87
64568876--64569138	130	2.0	130	99	0	517	25	28	22	23	1.99
64570026--64570065	19	2.1	19	95	0	71	40	15	12	32	1.84
64571974--64572072	20	4.9	21	70	6	60	8	29	19	43	1.79
64575113--64575153	12	3.7	12	75	18	52	39	34	2	24	1.69
64575113--64575156	21	2.1	21	100	0	88	38	34	4	22	1.75
64581744--64581822	37	2.1	37	88	4	115	25	30	18	25	1.98
64581941--64582263	47	6.9	47	94	0	547	28	30	8	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64581941--64582426	141	3.4	141	89	6	747	28	30	8	32	1.87
64582245--64582281	19	1.9	19	100	0	74	29	37	10	21	1.88
64582175--64582367	106	1.8	106	98	0	377	30	31	7	31	1.85
64582128--64582416	153	1.9	153	98	0	560	30	30	7	31	1.85
64582264--64582414	47	3.4	41	93	6	187	29	29	7	32	1.86
64582281--64582426	47	3.1	47	98	0	283	29	28	8	33	1.86
64586680--64586720	21	2.0	21	85	0	55	21	7	4	65	1.37
64591445--64591622	27	6.6	27	84	3	205	29	28	15	26	1.96
64591466--64591621	82	1.9	81	88	3	233	29	28	15	26	1.96
64598321--64598498	27	6.6	27	84	3	205	29	28	15	26	1.96
64598342--64598497	82	1.9	81	88	3	233	29	28	15	26	1.96
64607777--64607810	12	2.7	13	81	9	52	79	0	20	0	0.73
64608824--64608866	13	3.4	13	81	12	54	13	9	4	72	1.26
64608736--64609130	98	4.1	98	81	10	429	25	16	18	39	1.91
64609036--64609646	148	4.1	147	85	3	766	30	16	19	33	1.94
64609036--64609646	73	8.3	75	83	4	751	30	16	19	33	1.94
64609717--64609749	14	2.4	14	94	0	57	18	12	6	63	1.48
64609552--64610141	87	6.5	88	75	13	434	27	16	17	38	1.91
64609817--64610006	102	1.8	103	87	4	285	27	14	16	40	1.88
64610785--64610853	30	2.3	30	92	0	120	26	50	5	17	1.68
64611325--64611353	14	2.1	14	100	0	58	34	0	0	65	0.93
64611329--64611458	14	9.2	14	66	24	53	36	5	3	55	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64611332--64611384	22	2.3	23	83	3	63	33	3	3	58	1.34
64611390--64611461	25	2.8	26	81	6	94	36	6	2	54	1.42
64611603--64611658	25	2.3	24	79	14	62	37	16	3	42	1.65
64613707--64613748	20	2.0	21	86	4	59	38	11	2	47	1.53
64627738--64627803	33	2.0	33	100	0	132	45	9	24	21	1.80
64640685--64640725	22	1.9	21	85	5	55	19	26	41	12	1.87
64641843--64642014	94	1.8	92	84	7	231	23	27	20	28	1.99
64641843--64642011	46	3.6	47	81	7	184	23	27	20	28	1.98
64647882--64648067	40	4.7	40	89	2	268	23	20	28	27	1.99
64647895--64648050	79	2.0	79	93	2	269	25	21	28	25	1.99
64647895--64648090	79	2.5	79	86	5	236	25	20	27	27	1.99
64655518--64655543	12	2.2	12	100	0	52	50	7	0	42	1.31
64656027--64656204	27	6.6	27	83	3	205	26	15	28	29	1.96
64656028--64656183	82	1.9	81	88	3	233	26	15	28	29	1.96
64656024--64656204	82	2.2	81	83	2	229	27	15	27	29	1.96
64662125--64662268	27	5.3	27	81	6	139	29	22	8	39	1.83
64662300--64662450	27	5.6	27	79	6	155	41	21	8	28	1.83
64662267--64662450	54	3.4	51	76	8	138	40	20	10	28	1.85
64662300--64662449	81	1.9	81	84	8	207	41	21	8	28	1.82
64662462--64662513	27	1.9	28	88	7	81	42	13	9	34	1.77
64663657--64663790	42	3.2	42	88	0	214	31	17	18	32	1.94
64663814--64663919	31	3.4	31	93	0	185	28	16	26	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64666127--64666223	27	3.6	27	87	2	97	31	19	9	39	1.83
64666146--64666236	27	3.4	27	89	0	119	29	21	6	41	1.79
64666244--64666397	27	5.7	27	80	3	150	38	20	9	30	1.85
64666388--64666481	27	3.4	27	77	11	100	42	19	8	29	1.80
64666272--64666420	81	1.8	81	82	5	194	41	20	8	29	1.82
64666507--64666603	27	3.6	27	70	10	72	38	16	21	23	1.93
64666916--64666956	20	2.0	22	85	9	59	24	17	36	21	1.94
64668191--64668363	43	4.0	43	75	3	170	31	26	13	28	1.94
64676049--64676144	40	2.4	40	89	0	138	25	18	23	32	1.97
64676147--64676241	28	3.4	28	89	0	127	26	11	29	32	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235