genome.fa.s4.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  92  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31821731--31821819	33	2.7	33	82	3	99	21	43	5	29	1.75
31821758--31821833	33	2.3	32	80	8	82	23	42	3	30	1.72
31822439--31822649	117	1.8	117	88	0	323	42	27	7	22	1.79
31822836--31822880	16	2.7	16	89	6	63	28	0	28	42	1.56
31829536--31829606	36	2.0	36	100	0	142	39	11	18	30	1.86
31837534--31837579	23	2.0	23	100	0	92	39	21	4	34	1.73
31839336--31839419	43	2.0	43	83	9	109	28	28	17	25	1.98
31842518--31842560	16	2.6	16	85	3	59	55	9	9	25	1.61
31842518--31842596	35	2.3	35	82	6	90	58	7	6	27	1.50
31842967--31843001	13	2.7	13	100	0	70	42	17	5	34	1.73
31843184--31843223	20	2.0	20	90	0	62	45	5	0	50	1.23
31854834--31854879	22	2.0	23	83	8	58	28	30	28	13	1.94
31856540--31856769	55	4.2	53	80	11	261	23	22	17	36	1.95
31856540--31856769	108	2.1	109	90	4	367	23	22	17	36	1.95
31856967--31857053	44	2.0	44	86	4	122	24	26	13	35	1.93
31857535--31857636	50	2.0	50	96	0	186	39	18	0	41	1.57
31862968--31863190	53	4.2	53	80	6	243	20	25	17	36	1.94
31862989--31863190	108	1.9	108	91	0	332	20	25	18	35	1.95
31863169--31863213	23	2.0	22	86	0	54	20	24	13	40	1.88
31863061--31863308	131	1.9	131	92	2	410	22	24	16	36	1.94
31863209--31863316	54	2.0	55	87	1	155	21	25	16	37	1.94
31863295--31863410	47	2.5	47	92	0	187	24	25	14	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31863556--31863640	44	1.9	45	85	2	118	27	24	11	36	1.90
31866479--31866654	46	3.7	46	82	3	192	21	30	22	25	1.99
31869780--31869957	51	3.5	51	90	3	261	28	30	13	28	1.94
31869780--31869957	52	3.5	50	89	4	250	28	30	13	28	1.94
31874561--31874606	22	2.1	22	100	0	92	21	21	13	43	1.86
31876618--31876663	22	2.1	22	100	0	92	21	21	13	43	1.86
31878018--31878150	27	4.9	27	69	15	78	52	1	2	43	1.22
31878024--31878129	27	3.9	27	74	8	81	51	1	0	46	1.11
31885055--31885187	45	3.0	45	77	13	143	32	27	15	24	1.96
31888800--31888833	17	2.1	15	89	10	50	35	0	26	38	1.57
31889031--31889146	50	2.3	50	84	0	142	27	18	23	31	1.97
31892164--31892206	21	2.0	21	86	8	61	41	2	16	39	1.61
31892631--31892843	25	8.6	27	66	18	83	18	23	21	36	1.95
31892691--31892830	72	1.9	73	81	12	173	19	23	23	33	1.97
31892764--31892889	49	2.6	49	78	5	130	23	26	19	31	1.98
31899962--31900186	48	4.7	48	77	4	161	26	16	31	25	1.97
31901001--31901175	26	6.8	26	82	0	201	27	21	21	29	1.99
31901979--31902065	27	3.2	27	88	3	122	19	26	19	34	1.96
31902123--31902428	27	11.3	27	76	7	172	33	8	19	38	1.82
31902212--31902360	80	1.9	80	86	0	217	28	8	19	43	1.79
31902096--31902428	54	6.1	54	75	4	213	33	8	20	38	1.83
31902352--31902536	27	6.9	27	87	0	226	40	9	22	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31903361--31903391	11	2.8	11	100	0	62	19	0	32	48	1.49
31905911--31905954	20	2.2	20	84	8	54	27	0	2	70	0.99
31935953--31935981	13	2.1	14	93	6	51	0	20	0	79	0.74
31950380--31950446	34	2.0	33	88	2	98	61	2	5	29	1.35
31950437--31950485	25	1.9	26	83	4	64	65	4	0	30	1.11
31950394--31950483	34	2.6	34	79	10	85	63	3	4	28	1.30
31950434--31950481	16	2.7	18	81	15	55	62	4	0	33	1.14
31950434--31950540	19	5.8	19	69	14	73	62	2	1	32	1.20
31950899--31950981	9	8.9	10	71	23	58	36	2	0	61	1.09
31950896--31950969	18	4.2	18	77	14	82	35	2	0	62	1.10
31950913--31950983	28	2.6	27	84	10	90	36	2	0	60	1.11
31950899--31950969	17	4.1	17	79	16	83	33	2	0	63	1.09
31962262--31962351	44	2.0	44	97	0	171	33	22	14	30	1.93
31964029--31964407	188	2.0	188	97	0	713	27	17	16	38	1.91
31974108--31974133	11	2.4	11	100	0	52	80	0	0	19	0.71
32007196--32007319	48	2.6	47	81	5	144	33	29	13	24	1.93
32018428--32018469	20	2.1	20	95	0	75	19	7	28	45	1.76
32022707--32022748	18	2.3	18	84	8	50	7	19	4	69	1.31
32025179--32025287	43	2.6	43	75	8	116	27	16	22	33	1.96
32031505--32031569	29	2.2	29	88	0	94	21	16	30	30	1.96
32031518--32031589	29	2.5	29	79	2	74	22	15	31	30	1.94
32035619--32035728	43	2.6	43	80	11	120	27	19	24	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32041576--32041892	47	6.8	46	74	14	238	21	29	20	27	1.98
32041576--32041892	94	3.4	91	78	9	293	21	29	20	27	1.98
32041575--32041892	141	2.3	137	80	10	342	21	29	20	27	1.98
32049056--32049195	51	2.7	51	81	4	158	28	28	16	26	1.97
32052434--32054021	794	2.0	794	96	0	2944	34	12	19	33	1.90
32054513--32054723	46	4.6	46	75	11	182	29	19	27	23	1.98
32061020--32061124	52	2.0	52	98	0	201	33	23	14	28	1.94
32061860--32061979	48	2.6	47	88	5	163	31	17	25	25	1.97
32061860--32062025	46	3.6	46	83	11	187	31	17	27	24	1.97
32065520--32065546	13	2.1	13	100	0	54	25	14	22	37	1.93
32079098--32079177	40	2.0	40	97	0	151	12	13	22	51	1.75
32079242--32079285	21	2.1	21	100	0	88	54	4	13	27	1.58
32080614--32080642	14	2.1	14	100	0	58	27	20	17	34	1.95
32085864--32086272	47	8.6	47	92	3	665	32	8	30	28	1.86
32085864--32086272	96	4.3	96	96	1	727	32	8	30	28	1.86
32086120--32086197	22	3.3	22	65	22	59	32	10	30	26	1.90
32086368--32086842	238	2.0	238	99	0	932	32	15	20	32	1.93
32087925--32088116	40	4.8	39	84	5	240	25	20	28	26	1.99
32091644--32091973	47	7.0	47	94	0	552	31	8	30	28	1.87
32092092--32092170	37	2.1	37	85	0	113	24	17	31	26	1.97
32096862--32096944	29	2.9	29	89	5	125	28	12	32	26	1.92
32096862--32096956	29	3.3	29	80	12	108	28	13	32	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32104150--32104289	29	4.9	29	80	2	131	27	14	30	28	1.95
32106776--32106811	18	2.0	18	94	0	63	41	5	22	30	1.76
32109809--32109938	49	2.6	49	85	3	154	27	20	28	23	1.99
32111162--32111346	39	4.7	39	90	0	271	31	24	20	23	1.98
32120502--32121051	47	11.4	47	88	3	731	32	9	29	29	1.88
32121170--32121248	37	2.1	37	85	0	104	25	18	31	24	1.98
32123770--32123993	39	5.7	39	88	0	304	30	22	20	25	1.98
32125906--32125939	15	2.3	15	100	0	68	38	26	8	26	1.85
32133102--32133199	49	2.0	49	95	0	178	39	15	26	18	1.90
32135566--32135716	40	3.8	39	85	4	178	24	24	27	23	2.00
32144189--32144234	13	3.6	13	97	2	85	10	32	26	30	1.90
32150804--32151076	48	5.6	48	84	1	314	27	30	18	23	1.98
32161716--32161995	48	5.8	48	80	6	280	27	28	17	26	1.98
32161661--32161995	96	3.4	96	80	5	334	27	27	17	27	1.98
32176290--32176338	22	2.2	22	88	3	71	28	34	16	20	1.94
32179072--32179115	19	2.3	19	100	0	88	50	9	4	36	1.55
32180338--32180519	38	4.8	38	80	2	159	13	21	26	37	1.91
32180338--32180595	114	2.3	114	80	1	266	15	20	25	37	1.92
32186676--32186863	38	4.9	38	79	5	146	13	19	28	37	1.90
32186835--32186873	16	2.4	16	91	0	60	23	23	20	33	1.97
32186854--32186938	38	2.2	38	87	4	118	10	18	29	41	1.84
32197581--32197765	79	2.3	81	84	7	236	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32197582--32197765	40	4.6	40	83	9	216	24	22	27	25	2.00
32197582--32197798	79	2.7	79	81	7	201	25	22	27	24	2.00
32205551--32205776	40	5.7	40	90	2	321	24	22	27	25	1.99
32208631--32208788	43	3.6	45	76	12	161	22	18	27	31	1.98
32216286--32216438	44	3.6	42	73	14	136	28	18	22	30	1.98
32218119--32218241	44	2.8	43	78	9	117	20	19	26	34	1.96
32218127--32218241	43	2.6	44	77	11	121	20	20	26	33	1.97
32219306--32219382	39	2.0	39	94	0	136	25	10	16	46	1.79
32219412--32219530	50	2.3	52	88	2	170	33	15	13	37	1.86
32221889--32221959	35	2.0	35	89	5	108	38	11	23	26	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235