genome.fa.s4.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  148  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49726636--49726669	18	1.9	18	88	5	52	55	0	11	32	1.36
49728296--49728334	15	2.6	16	84	8	55	53	15	17	12	1.72
49728737--49728770	18	1.9	18	88	5	52	55	0	11	32	1.36
49729943--49730087	52	2.8	52	84	3	157	23	17	31	26	1.97
49736616--49736824	53	3.9	53	77	1	202	21	23	17	37	1.94
49742382--49742422	10	4.4	10	79	17	52	60	2	19	17	1.46
49742676--49742750	26	2.9	26	79	0	87	38	14	18	28	1.90
49748045--49748069	12	2.1	12	100	0	50	24	16	8	52	1.70
49750406--49750720	48	6.6	48	77	7	311	24	27	20	26	1.99
49750406--49750720	143	2.2	144	84	6	408	24	27	20	26	1.99
49750406--49750737	96	3.5	96	81	5	363	25	28	19	26	1.99
49752596--49752635	21	1.9	21	84	0	53	45	10	15	30	1.78
49754606--49754725	49	2.5	47	85	6	143	26	30	18	24	1.98
49754742--49754908	46	3.6	46	80	8	153	23	26	19	29	1.98
49754787--49754913	46	2.8	45	84	8	159	22	27	21	29	1.99
49754651--49754923	92	2.9	91	74	11	236	26	28	18	27	1.98
49757169--49757197	9	3.3	9	90	9	51	20	0	0	79	0.74
49758740--49759172	131	3.3	131	79	7	425	35	17	18	29	1.93
49761832--49762310	44	10.9	44	89	0	652	27	29	14	28	1.95
49773758--49774125	131	2.8	129	78	6	370	34	17	18	29	1.94
49778974--49779095	43	2.9	43	90	1	192	22	30	22	25	1.99
49785316--49785346	14	2.2	14	94	0	53	61	6	0	32	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49790615--49790680	27	2.4	27	75	5	71	39	22	7	30	1.82
49790660--49790826	27	6.2	27	83	5	185	29	19	6	43	1.76
49790660--49790826	54	3.1	54	89	3	239	29	19	6	43	1.76
49791025--49791267	67	3.6	67	94	0	423	18	28	21	31	1.97
49797634--49797898	27	9.8	27	86	0	296	32	21	6	39	1.79
49797634--49797898	81	3.3	81	85	1	352	32	21	6	39	1.79
49798134--49798185	27	2.0	26	84	3	68	21	26	17	34	1.95
49798117--49798265	67	2.2	67	89	0	235	18	28	22	30	1.97
49799902--49799960	27	2.2	27	93	0	100	35	20	3	40	1.69
49800214--49800248	6	5.8	6	87	12	54	17	17	17	48	1.81
49805986--49806145	47	3.3	47	70	14	151	35	13	23	27	1.92
49805970--49806424	108	4.4	106	87	5	467	35	16	23	24	1.94
49806134--49806424	108	2.7	108	94	0	492	35	17	24	23	1.95
49806124--49806424	55	5.6	54	83	5	367	35	16	24	22	1.95
49821229--49821278	21	2.4	21	96	0	91	8	32	18	42	1.79
49821568--49825051	229	15.2	229	98	0	6695	37	23	6	32	1.81
49822185--49825336	183	17.2	183	74	10	785	37	23	6	32	1.81
49821568--49825312	69	54.5	69	73	10	1379	37	23	6	32	1.81
49826205--49826258	18	3.1	16	73	17	54	35	22	3	38	1.72
49827588--49827672	7	12.0	7	88	2	98	41	0	2	56	1.12
49827600--49827699	7	12.9	8	82	14	72	36	0	4	60	1.16
49828118--49828194	22	3.6	22	71	16	63	55	27	0	16	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49828333--49828453	50	2.4	50	81	2	127	42	33	0	22	1.59
49828419--49828448	15	2.0	15	93	0	51	43	36	0	20	1.52
49828419--49828487	22	3.2	21	72	13	59	44	28	1	24	1.62
49845660--49845725	33	2.0	33	96	0	123	42	19	3	34	1.67
49848289--49848338	17	2.9	17	74	14	57	32	0	4	64	1.12
49855819--49855895	38	2.0	38	97	0	145	44	19	7	28	1.78
49861615--49861662	19	2.6	19	80	9	55	35	2	14	47	1.56
49861676--49861768	43	2.2	43	92	3	152	27	6	13	51	1.66
49873364--49873411	19	2.6	19	80	9	55	35	2	14	47	1.56
49873425--49873517	43	2.2	43	92	3	152	27	6	13	51	1.66
49874531--49874565	19	1.9	17	88	11	52	34	0	17	48	1.47
49874638--49874731	30	3.2	30	70	7	93	50	3	19	27	1.63
49874638--49874767	59	2.2	60	83	6	176	48	3	23	25	1.65
49875099--49875142	21	2.1	21	95	0	79	50	34	15	0	1.45
49875458--49875484	7	3.9	7	100	0	54	29	0	40	29	1.57
49877532--49877558	7	3.9	7	100	0	54	29	0	40	29	1.57
49887404--49887442	17	2.3	17	100	0	78	41	0	17	41	1.50
49889167--49889296	64	2.0	64	96	0	242	34	19	14	31	1.92
49898705--49898741	18	2.1	18	94	0	65	13	29	24	32	1.93
49900094--49900170	21	3.5	23	73	21	67	48	7	1	42	1.40
49904623--49905006	48	8.0	48	77	4	326	25	26	20	27	1.99
49904622--49905003	144	2.6	145	83	4	459	25	26	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49913298--49913339	22	2.0	22	95	4	77	16	28	45	9	1.79
49914616--49914750	49	2.8	47	86	5	189	24	31	17	26	1.97
49925551--49925589	18	2.2	18	95	0	69	38	28	2	30	1.70
49930031--49930125	20	4.8	20	84	5	115	35	9	21	33	1.85
49930039--49930125	40	2.2	40	89	4	131	35	10	21	32	1.87
49930175--49930268	26	3.7	26	94	1	163	25	27	22	24	2.00
49931900--49931935	18	2.0	18	88	0	54	55	19	2	22	1.56
49935663--49935819	27	5.8	27	82	4	133	40	19	9	29	1.83
49935657--49935793	54	2.5	55	85	4	181	40	21	8	30	1.82
49935664--49935833	54	3.2	53	81	6	173	40	18	11	30	1.85
49935661--49935820	81	2.0	81	83	4	207	40	20	9	30	1.83
49935746--49935833	27	3.3	27	93	0	140	40	15	14	28	1.87
49936265--49936352	32	2.8	32	83	0	122	28	20	19	31	1.97
49937268--49937306	20	2.0	20	89	0	60	38	0	15	46	1.46
49937906--49937948	22	2.0	22	95	0	77	13	34	0	51	1.42
49938914--49938962	25	2.0	25	87	0	71	34	20	16	28	1.94
49938999--49939049	21	2.4	21	80	6	59	33	11	21	33	1.90
49939122--49939168	25	2.0	24	83	8	60	29	21	23	25	1.99
49943836--49943889	26	2.1	26	100	0	108	31	14	29	24	1.95
49945146--49945184	20	2.0	20	89	0	60	38	0	15	46	1.46
49946209--49947615	352	4.0	352	97	0	2591	28	13	28	29	1.94
49946209--49947615	703	2.0	704	96	0	2591	28	13	28	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49947928--49947961	10	3.4	10	92	8	52	38	11	17	32	1.86
49947934--49947984	21	2.4	21	80	0	57	35	13	19	31	1.91
49948033--49948103	25	2.9	24	78	14	65	28	23	22	25	2.00
49948946--49949048	51	2.0	51	83	3	127	18	21	33	26	1.96
49949057--49949174	43	2.8	42	78	1	119	31	26	17	24	1.97
49954710--49954751	18	2.4	17	92	4	66	54	19	0	26	1.44
49956130--49956281	43	3.5	44	73	12	136	32	25	15	25	1.96
49956150--49956275	42	2.9	44	72	12	118	32	26	16	23	1.96
49958862--49958996	23	5.9	23	75	6	139	25	20	19	34	1.96
49958872--49959088	46	4.7	46	82	3	258	25	19	17	36	1.94
49958894--49959088	23	8.5	23	76	5	162	26	19	17	36	1.94
49960066--49960145	40	2.0	40	95	0	142	46	16	8	28	1.77
49960316--49960409	20	4.7	18	76	16	71	35	26	30	7	1.84
49965233--49965349	56	2.1	54	84	9	148	23	28	28	19	1.99
49968169--49968246	39	2.0	39	100	0	156	28	12	28	30	1.93
49968713--49968766	25	2.2	25	83	6	65	35	20	18	25	1.95
49968754--49968823	25	2.8	25	77	10	81	32	15	28	22	1.95
49980212--49980318	53	2.0	53	100	0	214	43	28	3	24	1.71
49985146--49985170	13	1.9	13	100	0	50	84	0	0	16	0.63
49991415--49991440	13	2.0	13	100	0	52	15	38	30	15	1.88
49991834--49991873	20	2.0	20	100	0	80	40	25	20	15	1.90
50004706--50004878	43	4.0	42	81	9	197	35	26	15	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50009768--50009890	43	2.9	43	83	0	147	25	16	26	32	1.96
50018900--50019022	43	2.9	43	91	0	183	23	16	27	32	1.96
50018896--50019046	43	3.5	43	82	9	175	26	15	24	33	1.95
50022299--50022383	24	3.5	24	75	9	64	37	16	24	21	1.93
50022313--50022373	25	2.5	25	84	5	81	42	13	22	21	1.87
50029562--50029861	79	3.8	77	76	16	244	62	1	12	23	1.38
50029564--50029712	45	3.4	45	75	17	152	63	2	11	23	1.38
50029630--50029891	27	9.4	27	68	23	143	61	1	11	25	1.38
50029663--50029764	26	3.4	32	74	24	105	64	1	9	23	1.34
50029601--50029689	22	4.0	22	70	16	67	64	2	10	23	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235