genome.fa.s4.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  98  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33761713--33762006	147	2.0	147	99	0	579	30	11	30	26	1.92
33765871--33765927	24	2.4	24	82	5	71	49	5	1	43	1.35
33767365--33767644	71	3.9	71	98	0	533	39	6	7	46	1.58
33770610--33770766	43	3.7	42	82	5	183	24	18	26	31	1.98
33771507--33771551	22	2.0	24	86	8	67	33	4	24	37	1.76
33773171--33773229	30	1.9	31	86	3	84	47	1	22	28	1.61
33783746--33783811	18	3.8	17	71	11	53	48	1	3	46	1.26
33790066--33790131	18	3.5	18	76	17	71	24	1	1	72	1.01
33790087--33790128	10	4.1	10	80	14	50	26	0	2	71	0.98
33790171--33790297	9	13.7	9	68	17	64	33	3	4	59	1.34
33790878--33790941	24	2.7	23	88	7	76	25	0	14	60	1.33
33790893--33790941	24	2.1	23	96	3	89	22	0	14	63	1.30
33791466--33791534	27	2.6	27	95	2	122	17	5	21	55	1.63
33793943--33794068	42	3.0	42	84	0	162	37	15	27	19	1.92
33805483--33805523	2	20.5	2	84	0	55	41	7	0	51	1.30
33805483--33805521	16	2.4	16	95	0	69	41	7	0	51	1.31
33805552--33805626	26	2.9	26	72	16	75	34	0	4	61	1.15
33808818--33808880	18	3.6	18	79	12	85	23	36	4	34	1.76
33808817--33808899	35	2.4	35	100	0	166	26	33	4	34	1.78
33808836--33808897	17	3.6	17	79	12	81	25	33	4	35	1.78
33808817--33808914	35	2.8	35	92	0	124	28	31	4	35	1.76
33809712--33809767	28	2.0	28	96	0	103	37	0	23	39	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33810996--33811029	17	2.0	17	100	0	68	41	5	11	41	1.66
33816689--33816746	6	9.5	6	83	14	57	84	0	10	5	0.77
33816683--33816745	16	3.9	16	77	6	65	84	0	9	6	0.79
33816683--33816754	37	2.0	35	89	5	108	83	0	8	8	0.82
33817696--33818655	205	4.7	205	93	1	1561	31	17	21	29	1.97
33818494--33818977	261	1.9	256	87	3	709	33	17	22	27	1.96
33819285--33819378	19	5.2	19	81	15	110	38	7	15	38	1.76
33819335--33819360	5	5.2	5	100	0	52	38	0	23	38	1.55
33822763--33822912	27	5.5	27	80	6	144	28	28	16	26	1.97
33828508--33828682	46	3.8	46	77	11	187	28	28	21	22	1.99
33828515--33828686	93	1.8	93	91	2	283	27	27	21	23	1.99
33828559--33828702	46	3.1	44	74	15	132	29	27	20	22	1.98
33830194--33830741	177	3.1	178	86	3	739	28	20	19	31	1.97
33831070--33831101	15	2.1	15	94	0	55	25	3	28	43	1.69
33838688--33838731	19	2.3	19	84	7	54	36	13	25	25	1.92
33856955--33856986	12	2.7	12	95	0	55	43	9	25	21	1.82
33865603--33865679	30	2.6	30	93	0	127	27	16	23	32	1.96
33879011--33879082	36	2.0	36	100	0	144	36	19	16	27	1.93
33887369--33887417	3	16.3	3	100	0	98	32	0	0	67	0.91
33897654--33897915	39	6.7	40	88	7	337	24	27	22	25	2.00
33905634--33905817	40	4.7	40	81	11	211	25	27	22	25	2.00
33905634--33905817	79	2.3	81	82	11	222	25	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33909028--33909066	20	2.0	20	94	0	69	28	30	23	17	1.97
33909062--33909138	31	2.5	31	93	0	127	19	35	29	15	1.93
33914023--33914067	11	4.3	10	81	18	56	48	2	11	37	1.51
33921148--33921428	47	6.0	47	88	1	375	29	10	33	27	1.90
33921145--33921430	94	3.0	94	93	0	464	30	10	32	26	1.89
33923147--33923238	45	2.0	45	97	0	175	28	15	30	26	1.96
33930247--33930272	5	5.2	5	100	0	52	42	0	0	57	0.98
33938921--33938958	20	1.9	20	88	0	58	26	7	21	44	1.79
33942495--33942544	26	1.9	26	95	0	91	16	26	40	18	1.90
33970390--33970474	40	2.2	40	93	2	145	36	23	7	32	1.82
33981002--33981224	104	2.1	107	85	6	301	26	16	20	37	1.93
33982484--33982529	23	2.0	23	100	0	92	21	21	26	30	1.99
33982629--33982804	46	3.8	45	78	12	205	21	21	28	28	1.98
33982625--33982796	93	1.8	93	93	2	301	21	21	29	27	1.99
33983656--33983693	20	1.9	20	88	0	58	55	2	0	42	1.14
33984514--33984810	89	3.4	89	81	3	332	22	4	12	59	1.51
33984557--33984823	85	3.1	85	77	6	268	21	4	13	60	1.51
33984915--33984953	20	1.9	21	94	5	71	61	5	5	28	1.39
33987093--33987127	18	1.9	18	88	0	52	25	8	0	65	1.21
33987088--33987161	23	3.3	22	74	10	71	25	10	1	62	1.36
33987095--33987160	11	5.8	11	76	13	62	27	10	1	60	1.38
33987088--33987161	34	2.2	33	83	9	96	25	10	1	62	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33987300--33987333	17	2.0	17	100	0	68	29	11	5	52	1.61
33987499--33987555	11	5.0	11	79	12	53	26	12	3	57	1.50
33987504--33987555	17	3.0	17	85	2	68	26	13	3	55	1.55
33987317--33987541	117	1.9	117	80	5	258	24	10	3	61	1.44
33987811--33987859	25	2.0	25	84	4	64	63	8	0	28	1.23
33987823--33987887	25	2.9	23	82	15	75	66	9	0	24	1.21
33987849--33987887	19	2.0	20	95	5	71	71	10	0	17	1.12
33987945--33987999	22	2.5	20	77	13	56	58	3	3	34	1.33
33988379--33988443	22	2.9	21	86	11	85	27	15	1	55	1.49
33988375--33988444	11	6.4	11	72	18	65	25	17	1	55	1.50
33988489--33988529	17	2.5	17	88	4	57	24	14	2	58	1.49
33992322--33992472	57	2.7	56	82	1	194	37	18	15	28	1.91
33994440--33995022	40	14.6	40	94	1	922	27	28	20	23	1.99
34003542--34003594	9	5.8	9	76	10	54	81	1	1	15	0.87
34003543--34003582	5	8.0	5	83	10	55	82	2	0	15	0.77
34003542--34003594	16	3.5	15	82	10	63	81	1	1	15	0.87
34003543--34003592	21	2.5	20	84	9	66	82	2	2	14	0.86
34004228--34004267	13	2.9	14	88	3	55	17	5	7	70	1.30
34006723--34006753	3	10.3	3	100	0	62	35	0	0	64	0.94
34006677--34006830	75	2.1	75	98	0	299	36	15	3	44	1.63
34006798--34006824	3	9.0	3	100	0	54	33	0	0	66	0.92
34019322--34019369	7	7.7	6	88	6	53	12	6	2	79	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34019332--34019370	7	5.9	7	91	8	64	12	10	0	76	1.01
34030885--34030960	22	3.5	22	75	7	73	28	30	9	31	1.88
34030920--34030967	22	2.2	22	92	0	78	37	31	6	25	1.81
34031086--34031132	21	2.2	22	88	3	69	48	10	8	31	1.68
34032255--34032360	53	2.0	53	94	0	185	34	22	12	30	1.91
34033147--34034108	482	2.0	481	98	0	1852	31	21	11	34	1.90
34034112--34034219	44	2.4	44	87	3	144	29	23	13	33	1.93
34034407--34034815	205	2.0	205	97	0	764	29	20	6	42	1.78
34034999--34035155	79	2.0	79	97	0	296	43	19	5	31	1.73
34041750--34041857	44	2.4	44	87	3	144	29	23	13	33	1.93
34042195--34042289	30	3.2	30	71	16	108	31	20	5	43	1.74
34042192--34042306	58	2.0	58	98	0	221	29	22	4	43	1.72
34042203--34042325	58	2.1	58	87	0	174	29	22	6	41	1.79
34046692--34046867	40	4.4	40	90	2	275	24	30	22	23	1.99
34048953--34048996	22	2.0	22	82	8	54	22	20	18	38	1.93
34049165--34049197	11	3.1	11	82	8	50	9	18	12	60	1.57
34055387--34055491	39	2.7	39	83	4	122	33	13	18	35	1.89
34055472--34055591	36	3.3	36	78	9	145	34	15	17	32	1.92
34055999--34056038	18	2.2	18	86	0	53	32	15	10	42	1.79
34057552--34057599	23	2.1	23	88	0	69	27	20	14	37	1.92
34057564--34057622	23	2.7	22	84	7	68	22	18	15	44	1.87
34062691--34062834	47	3.1	47	84	2	191	30	10	31	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34062953--34063031	37	2.1	37	90	0	122	24	18	31	25	1.98
34068085--34068151	33	2.0	33	100	0	134	34	29	14	20	1.93
34078931--34078971	22	1.9	22	90	5	66	17	26	43	12	1.84
34082812--34082871	23	2.6	23	97	0	111	16	23	33	26	1.96
34083281--34083497	46	4.6	46	79	12	221	22	31	19	26	1.98
34083327--34083500	94	1.9	92	86	7	253	22	31	20	25	1.98
34091907--34091934	13	2.2	13	100	0	56	25	32	14	28	1.94
34102270--34102307	7	5.4	7	100	0	76	28	0	39	31	1.57
34109318--34109366	20	2.5	20	89	0	71	10	30	38	20	1.86
34110130--34110339	52	4.1	52	73	13	177	30	29	15	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235