Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  131  of  235  ( 28198 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44504857--44504886
14
2.1
14
93
0
51
43
23
23
10
1.83
44504880--44504942
29
2.2
29
85
0
90
26
20
25
26
1.99
44505634--44505662
13
2.2
13
100
0
58
37
24
10
27
1.88
44506770--44506809
8
5.0
8
100
0
80
25
0
0
75
0.81
44506770--44506815
16
2.9
16
93
3
67
26
0
0
73
0.83
44507583--44507613
16
2.0
15
93
6
53
67
0
0
32
0.91
44510269--44510325
29
1.9
30
89
3
89
47
21
3
28
1.67
44510625--44510658
16
2.2
16
89
5
52
52
0
2
44
1.16
44515926--44515972
24
2.0
24
91
0
76
42
14
14
27
1.86
44531933--44532103
93
1.8
93
88
2
263
29
29
20
20
1.98
44531926--44532196
46
5.8
46
77
11
225
29
28
20
21
1.98
44531944--44532194
139
1.8
139
91
1
414
29
27
19
22
1.98
44535027--44535146
40
3.0
40
95
0
204
39
9
12
39
1.75
44535598--44535693
44
2.2
44
86
3
131
34
10
9
45
1.71
44536893--44536945
26
2.0
28
88
7
83
64
9
7
18
1.47
44538686--44538726
18
2.2
19
87
12
59
43
7
17
31
1.76
44538788--44538929
58
2.4
58
82
2
169
24
21
28
26
1.99
44538821--44538944
58
2.1
58
81
0
140
27
18
27
26
1.98
44540665--44540779
60
1.9
60
85
7
162
41
14
4
39
1.66
44541363--44541433
31
2.4
29
81
9
72
56
9
11
22
1.64
44559257--44559367
47
2.4
47
83
6
145
26
16
22
35
1.95
44571892--44571972
4
19.8
4
77
5
72
65
3
25
4
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44572736--44572846
47
2.4
47
84
6
154
25
16
23
35
1.95
44585073--44585114
16
2.5
16
92
7
66
76
9
7
7
1.17
44585086--44585121
16
2.2
16
90
0
54
83
8
2
5
0.89
44585265--44585320
13
3.7
16
79
13
57
69
0
30
0
0.89
44585262--44585320
29
2.0
31
87
9
88
69
0
30
0
0.89
44590196--44590234
17
2.3
17
91
8
62
33
10
10
46
1.72
44593052--44593112
26
2.3
26
75
10
63
22
8
6
62
1.47
44592776--44593099
151
2.1
151
91
3
519
28
7
7
57
1.53
44592956--44593220
120
2.2
121
86
3
356
27
7
7
57
1.53
44593076--44594316
151
8.3
151
88
2
1740
28
7
6
57
1.52
44593499--44593560
13
4.5
13
72
16
54
25
1
3
69
1.13
44593076--44594316
451
2.8
450
89
3
1804
28
7
6
57
1.52
44593638--44593696
16
3.8
16
66
8
50
20
6
6
66
1.39
44593825--44593849
13
1.9
13
100
0
50
16
0
4
80
0.87
44594101--44594161
13
4.5
13
76
13
61
26
1
3
68
1.14
44594866--44594948
22
3.8
21
69
25
57
1
30
2
66
1.12
44595073--44595122
20
2.5
20
87
3
75
8
10
8
74
1.24
44595746--44595795
18
2.7
18
84
3
64
18
4
4
74
1.14
44595773--44595838
5
13.6
5
71
16
50
16
3
3
77
1.02
44595773--44595841
9
7.2
9
73
23
52
17
2
2
76
1.03
44595885--44595940
18
2.8
20
78
15
62
39
1
0
58
1.08
44598098--44598284
53
3.5
51
78
12
166
31
17
25
26
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44602905--44602957
21
2.6
21
84
3
72
35
3
0
60
1.15
44603025--44603075
22
2.4
21
83
6
59
43
0
3
52
1.19
44603036--44603086
22
2.2
24
89
6
79
47
0
1
50
1.12
44603250--44603319
20
3.4
21
90
9
110
58
0
0
41
0.98
44603250--44603319
21
3.5
20
92
5
106
58
0
0
41
0.98
44603250--44603340
20
4.5
21
84
12
86
58
1
0
40
1.05
44603250--44603345
39
2.4
41
83
10
110
56
2
0
41
1.11
44615418--44615443
13
2.0
13
100
0
52
46
0
0
53
1.00
44615643--44615694
20
2.5
20
81
12
70
69
0
1
28
0.99
44618272--44618374
30
3.4
30
90
2
154
25
26
20
28
1.99
44624637--44624669
9
3.8
9
96
4
59
57
0
0
42
0.98
44624734--44624771
9
3.7
10
83
16
51
73
2
0
23
0.95
44624733--44624780
21
2.3
20
86
6
69
68
2
0
29
1.01
44624733--44624780
10
4.7
10
78
14
53
68
2
0
29
1.01
44624850--44624899
21
2.5
21
87
6
68
52
0
0
48
1.00
44624587--44624892
121
2.5
121
74
16
306
55
3
1
39
1.27
44624901--44624966
21
3.0
23
73
10
66
50
3
1
45
1.26
44624833--44624953
20
6.3
20
65
21
62
52
2
0
45
1.14
44628905--44628944
19
2.1
19
86
9
55
40
5
40
15
1.68
44629399--44629510
43
2.6
43
90
1
163
25
35
21
16
1.95
44636923--44636976
16
3.3
16
76
2
54
18
9
0
72
1.11
44649796--44649887
46
2.0
46
93
0
157
26
18
30
25
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44658640--44658692
25
2.1
25
96
0
97
11
22
13
52
1.71
44669237--44669304
9
7.6
9
81
6
84
45
16
8
29
1.77
44670347--44670393
22
2.1
22
100
0
94
36
23
0
40
1.55
44672026--44672075
15
3.7
15
70
25
56
40
4
0
56
1.18
44672031--44672074
12
3.6
12
75
6
52
36
4
0
59
1.18
44672861--44672896
19
1.9
19
88
5
56
41
2
2
52
1.30
44673587--44673619
8
4.2
8
84
7
50
51
9
0
39
1.34
44673587--44673619
15
2.1
16
88
5
50
51
9
0
39
1.34
44674498--44674541
3
14.7
3
80
0
52
4
34
4
56
1.40
44674507--44674550
15
3.1
15
81
18
51
6
34
4
54
1.47
44675027--44675065
19
2.1
19
85
0
51
82
5
10
2
0.93
44678731--44678781
25
2.1
24
89
7
77
43
1
0
54
1.11
44680244--44680287
22
2.0
22
82
8
54
52
0
4
43
1.22
44684200--44684229
14
2.2
14
94
5
53
63
3
0
33
1.11
44685311--44685335
10
2.5
10
100
0
50
52
0
8
40
1.31
44694231--44694260
3
10.0
3
100
0
60
0
33
0
66
0.92
44707474--44707537
30
2.1
30
82
5
76
60
1
4
32
1.26
44707523--44707591
20
3.5
20
80
9
79
65
0
5
28
1.16
44707536--44707594
9
6.2
9
81
11
64
64
0
5
30
1.15
44707731--44707755
12
2.1
12
100
0
50
76
0
0
24
0.80
44707881--44707948
22
3.2
21
81
10
84
36
2
0
60
1.12
44707881--44707950
21
3.3
21
84
11
90
37
2
0
60
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44709836--44709911
36
2.1
37
82
2
91
27
22
31
18
1.97
44711769--44711817
21
2.3
21
89
0
71
46
12
16
24
1.81
44713732--44713839
21
5.3
20
71
11
78
62
1
2
32
1.20
44713942--44713972
16
1.9
16
93
0
53
67
3
6
22
1.28
44714444--44714569
60
2.1
60
82
10
152
31
5
1
61
1.29
44714480--44714566
40
2.2
41
79
10
99
35
2
1
60
1.17
44714480--44714634
10
15.2
10
69
12
75
34
3
0
61
1.17
44714421--44714572
20
7.7
20
68
20
79
30
4
1
63
1.26
44714498--44714633
41
3.3
40
75
13
116
33
3
0
61
1.19
44714597--44714644
18
2.6
18
83
6
60
33
0
2
64
1.05
44715722--44715840
43
2.8
42
76
2
139
31
15
24
27
1.96
44718526--44718565
16
2.6
16
92
4
64
20
20
5
55
1.62
44731842--44731871
16
1.9
15
93
6
51
63
0
0
36
0.95
44732084--44732127
21
2.1
21
83
8
54
4
15
11
68
1.36
44745198--44746125
473
2.0
473
99
0
1847
33
18
23
24
1.96
44751150--44751210
26
2.5
24
74
15
61
49
3
3
44
1.35
44751157--44751213
24
2.4
25
82
11
66
49
5
3
42
1.42
44753179--44753224
24
1.9
24
100
0
92
34
8
8
47
1.65
44755140--44755180
11
3.9
11
81
12
50
46
0
0
53
1.00
44758167--44758229
30
2.1
30
82
5
74
26
1
7
63
1.31
44758239--44758284
24
2.0
24
82
4
58
50
10
0
39
1.38
44760314--44760366
25
2.2
24
81
12
65
52
7
1
37
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44763843--44763876
17
2.0
17
94
0
59
44
50
0
5
1.26
44768482--44768515
17
2.0
17
94
0
59
44
50
0
5
1.26
44769557--44769598
14
3.1
14
72
6
50
73
2
2
21
1.06
44770306--44770364
30
2.0
30
89
0
91
28
3
11
55
1.52
44771928--44771971
3
15.0
3
80
4
54
29
2
0
68
1.02
44771965--44772042
23
3.2
25
71
14
65
33
2
6
57
1.38
44772091--44772413
3
105.7
3
65
18
59
30
2
5
60
1.33
44772002--44772499
145
3.5
141
86
8
675
30
3
5
60
1.35
44772518--44772577
7
8.3
7
75
12
50
31
1
1
65
1.13
44772012--44772558
145
3.8
142
82
10
555
29
4
5
60
1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235