genome.fa.s4.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  94  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32563179--32563318	73	1.9	73	84	8	187	40	13	17	27	1.88
32563213--32563417	72	2.8	73	80	4	200	39	15	19	26	1.90
32563444--32563520	35	2.2	36	90	2	120	32	19	23	24	1.97
32563461--32563578	58	2.0	58	90	3	184	33	18	24	22	1.97
32563496--32563544	23	2.2	23	85	3	64	30	18	28	22	1.97
32563519--32563756	35	6.7	35	74	8	167	37	16	20	25	1.93
32563519--32563710	35	5.4	36	79	7	176	36	16	21	26	1.94
32563527--32563710	36	5.1	37	80	7	166	36	16	20	26	1.94
32563519--32563710	72	2.7	72	79	3	215	36	16	21	26	1.94
32564650--32564685	16	2.2	16	90	0	54	63	2	5	27	1.30
32569940--32570203	129	2.0	129	86	1	368	30	24	20	25	1.98
32572886--32573068	40	4.6	40	94	0	294	21	24	28	25	1.99
32588869--32589093	49	4.5	49	87	3	299	29	27	18	24	1.98
32588856--32589100	99	2.5	100	83	4	316	28	27	18	24	1.98
32591232--32591296	15	4.4	15	76	16	64	64	13	12	9	1.49
32591232--32591300	30	2.3	31	80	14	83	62	17	11	8	1.53
32594503--32594644	49	2.9	50	82	1	178	30	21	19	28	1.97
32596491--32596544	25	2.2	25	90	6	83	37	14	42	5	1.69
32599557--32599585	13	2.2	13	100	0	58	13	31	37	17	1.89
32603205--32603275	20	3.4	19	74	24	63	23	5	1	69	1.18
32604847--32604921	27	2.7	28	89	6	109	12	5	5	77	1.10
32604847--32604927	28	3.0	26	84	8	99	11	6	6	76	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32604863--32604921	22	2.7	22	79	7	68	10	5	5	79	1.03
32609659--32609691	17	1.9	17	88	11	50	48	0	12	39	1.40
32611650--32611704	27	2.0	27	89	0	83	29	16	16	38	1.90
32615424--32615481	27	2.1	27	87	0	80	27	12	18	41	1.86
32617212--32617387	46	3.8	46	76	10	169	29	28	19	22	1.98
32619404--32619492	40	2.2	40	88	4	126	21	30	15	32	1.94
32633612--32633638	7	3.9	7	100	0	54	14	55	0	29	1.40
32633611--32633645	14	2.5	14	85	0	52	20	48	0	31	1.50
32640205--32640229	12	2.1	12	100	0	50	92	8	0	0	0.40
32641538--32641718	40	4.6	40	79	10	185	25	22	27	24	2.00
32641587--32641751	79	2.1	79	82	6	192	26	21	26	24	2.00
32646199--32646278	40	2.0	40	97	0	151	41	18	12	27	1.87
32646667--32646756	45	2.0	45	95	0	162	35	22	22	20	1.96
32647885--32647944	30	2.0	30	90	0	93	28	25	8	38	1.84
32648260--32648335	40	1.9	40	94	0	134	42	11	19	26	1.86
32653228--32653269	21	2.0	21	85	0	57	21	16	42	19	1.89
32655395--32655744	175	2.0	175	99	0	691	35	21	13	30	1.91
32664462--32664515	27	2.1	26	86	6	74	25	22	24	27	2.00
32664665--32664729	28	2.3	28	92	5	105	33	29	7	29	1.85
32664835--32664897	28	2.2	29	86	8	85	22	20	23	33	1.97
32664845--32664908	28	2.2	28	83	2	74	25	23	18	32	1.97
32674309--32674387	38	2.1	37	86	6	106	26	30	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32674506--32674704	47	4.2	47	89	2	299	28	31	8	31	1.87
32674506--32674709	96	2.1	94	88	4	309	28	30	8	32	1.87
32681199--32681224	13	2.0	13	100	0	52	23	30	23	23	1.99
32691333--32691450	61	1.9	61	98	0	227	31	20	12	35	1.90
32691588--32691694	37	2.9	37	90	0	160	26	30	19	23	1.98
32691978--32692021	11	4.0	11	81	0	52	36	27	0	36	1.57
32691841--32692000	48	3.3	48	88	6	241	31	27	6	35	1.82
32691978--32692021	22	2.0	22	100	0	88	36	27	0	36	1.57
32691844--32692022	98	1.8	97	82	7	227	31	26	5	35	1.80
32691927--32692285	70	4.9	70	71	18	286	33	26	4	35	1.77
32691879--32692341	120	4.0	120	70	15	450	32	26	5	35	1.79
32691999--32692221	48	4.5	48	86	6	302	33	26	4	35	1.77
32692197--32692237	11	3.7	11	86	0	64	39	24	0	36	1.56
32692199--32692243	22	2.0	22	100	0	90	37	26	0	35	1.57
32692116--32692244	48	2.7	47	86	4	125	32	26	4	36	1.77
32692221--32692728	50	10.2	50	89	2	709	34	25	4	35	1.77
32692116--32692342	118	1.9	117	91	5	368	31	26	5	35	1.80
32692221--32692743	102	5.2	100	93	1	716	34	25	4	35	1.76
32695041--32696187	40	28.7	40	85	0	1367	28	28	19	23	1.98
32697443--32697549	37	2.9	37	94	0	178	25	32	19	22	1.97
32697703--32698184	98	4.9	98	87	3	700	31	26	6	35	1.81
32697703--32698184	50	9.8	49	87	4	661	31	26	6	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32702235--32702285	21	2.4	21	86	0	75	19	23	37	19	1.94
32718179--32718275	25	3.9	25	77	0	104	28	17	25	27	1.98
32718180--32718275	50	1.9	50	84	0	129	29	17	25	28	1.98
32718230--32718289	27	2.3	25	82	5	66	28	20	25	26	1.99
32719614--32719650	19	1.9	19	89	10	58	29	16	16	37	1.90
32725774--32725811	20	1.9	20	88	0	58	39	7	10	42	1.69
32726170--32726226	23	2.5	22	76	15	71	28	24	15	31	1.96
32727181--32727358	27	6.6	27	83	3	205	26	15	28	29	1.96
32727182--32727337	82	1.9	81	88	3	233	26	15	28	29	1.96
32727178--32727358	82	2.2	81	83	2	229	27	15	27	29	1.96
32732766--32732943	27	6.6	27	84	3	205	29	28	15	26	1.96
32732787--32732942	82	1.9	81	88	3	233	29	28	15	26	1.96
32746001--32746362	46	7.8	46	77	15	388	21	20	29	29	1.98
32745998--32746355	93	3.8	93	98	0	689	21	20	29	28	1.98
32748936--32749041	42	2.5	42	93	0	176	16	22	33	27	1.95
32754174--32754232	24	2.5	24	86	10	93	11	18	6	62	1.50
32759766--32759975	46	4.5	45	75	14	185	29	20	27	23	1.98
32759672--32760121	140	3.2	140	85	4	532	29	19	28	23	1.98
32764905--32764939	17	2.1	17	100	0	70	34	17	31	17	1.93
32767169--32767437	46	5.7	48	73	11	193	27	18	29	24	1.98
32769480--32769575	48	2.0	48	85	4	131	37	4	17	40	1.69
32794056--32794088	13	2.5	13	95	0	57	18	33	24	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32799466--32799550	42	2.1	39	86	6	116	14	7	7	71	1.28
32804174--32804630	48	9.5	48	82	0	556	28	17	28	26	1.98
32804174--32804641	96	4.9	96	89	1	731	28	17	27	25	1.98
32809483--32809519	17	2.2	17	95	0	65	40	16	27	16	1.89
32813538--32813618	42	1.9	42	82	0	99	28	23	16	32	1.96
32815541--32815654	43	2.7	42	79	5	131	28	17	24	28	1.97
32815741--32815778	20	1.9	20	94	0	67	31	2	26	39	1.70
32824334--32824504	49	3.5	48	78	4	166	29	19	25	25	1.98
32831874--32831998	46	2.8	44	74	10	110	26	17	29	26	1.98
32844514--32845051	50	10.8	50	81	8	483	26	18	25	29	1.98
32844512--32845051	100	5.4	100	79	4	581	26	18	25	29	1.98
32844713--32844994	151	1.9	151	92	1	476	26	18	25	29	1.98
32844511--32845045	201	2.7	201	92	1	887	26	18	25	29	1.98
32845255--32845286	16	2.0	16	93	0	55	46	0	18	34	1.49
32849226--32849359	42	3.2	42	94	0	223	37	21	12	28	1.90
32849507--32849601	25	3.8	25	95	0	163	24	23	26	26	2.00
32849482--32849602	50	2.4	49	82	6	154	24	23	24	27	2.00
32850410--32850501	27	3.4	27	92	3	141	21	27	19	31	1.97
32850532--32850855	27	12.0	27	76	7	174	30	9	19	39	1.84
32850643--32850850	80	2.6	81	83	3	242	28	9	21	39	1.85
32850534--32850864	54	6.1	54	73	10	201	30	9	20	39	1.84
32850561--32850891	27	12.2	27	76	8	95	31	9	19	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32850842--32850999	27	5.9	27	85	3	192	40	8	20	29	1.83
32850832--32851012	81	2.2	80	76	7	202	37	8	20	33	1.83
32852118--32852334	43	5.0	43	82	6	251	24	15	29	30	1.95
32856423--32856594	62	2.8	61	80	3	202	31	25	9	33	1.89
32856421--32856690	61	4.4	60	76	6	181	28	24	12	34	1.91
32856651--32856718	27	2.5	28	90	9	113	16	23	17	42	1.88
32857004--32857163	53	3.0	53	76	9	175	26	23	11	37	1.90
32859114--32859140	14	1.9	14	100	0	54	51	0	11	37	1.37
32870878--32871002	46	2.7	45	85	6	144	28	19	27	24	1.98
32871488--32871612	46	2.7	45	85	6	144	28	19	27	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235