genome.fa.s4.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  195  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66437194--66437235	20	2.1	20	86	0	57	54	9	9	26	1.63
66443284--66443405	55	2.2	54	80	2	127	18	24	27	29	1.98
66443671--66443785	58	2.0	57	96	0	203	18	18	26	36	1.93
66449199--66449346	67	2.2	69	78	10	162	32	18	28	20	1.96
66449223--66449407	67	2.9	64	76	8	187	29	18	29	22	1.97
66455635--66455829	49	4.0	48	84	5	264	27	25	19	27	1.99
66455640--66455827	100	1.9	100	96	0	349	28	24	20	27	1.99
66457896--66457935	20	2.0	20	100	0	80	35	20	0	45	1.51
66460214--66460238	6	4.2	6	100	0	50	48	16	16	20	1.82
66462732--66462870	27	5.1	27	84	3	181	35	16	20	27	1.94
66462732--66462896	54	3.1	54	82	3	206	33	18	20	26	1.96
66462733--66462889	81	1.9	81	81	0	188	34	19	18	27	1.95
66463254--66463282	8	3.6	8	100	0	58	20	27	41	10	1.85
66470314--66470452	27	5.1	27	87	3	199	35	17	20	25	1.94
66470314--66470478	27	6.1	27	88	0	195	34	19	20	25	1.96
66471111--66471162	27	2.0	26	84	3	68	17	26	21	34	1.95
66475217--66475254	20	1.9	20	100	0	76	28	21	2	47	1.64
66476546--66476583	19	2.0	19	100	0	76	15	21	36	26	1.93
66490519--66490623	45	2.3	46	81	6	124	35	9	27	27	1.88
66493325--66493589	40	6.9	40	84	9	372	21	21	29	27	1.99
66493493--66493552	29	2.1	29	90	0	93	23	16	30	30	1.96
66493457--66493587	69	1.9	69	91	0	217	21	21	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66493753--66493803	25	2.0	25	81	7	59	33	13	31	21	1.92
66499841--66499868	12	2.3	12	100	0	56	14	25	25	35	1.93
66507590--66507636	18	2.6	18	89	0	76	14	42	25	17	1.87
66513707--66513802	40	2.5	38	78	9	104	39	35	10	14	1.80
66513725--66513800	40	1.9	40	86	0	107	39	32	11	15	1.84
66515825--66515881	28	2.1	27	83	9	71	56	0	3	40	1.17
66515819--66515884	34	1.9	35	84	9	91	54	1	3	40	1.25
66516240--66516283	13	3.3	14	78	9	56	70	0	0	29	0.88
66516329--66516368	12	3.3	12	89	0	53	75	2	0	22	0.93
66516329--66516368	18	2.2	18	86	0	53	75	2	0	22	0.93
66520051--66520105	21	2.6	21	91	0	92	21	9	40	29	1.84
66520185--66520313	32	4.0	32	100	0	258	43	3	12	41	1.58
66520191--66520307	16	7.3	16	73	21	111	45	2	12	39	1.56
66520796--66521090	29	10.2	29	92	4	481	38	8	2	51	1.43
66521161--66521239	7	11.1	7	72	17	58	12	48	1	37	1.50
66521161--66521239	13	5.6	13	80	14	77	12	48	1	37	1.50
66521104--66521239	60	2.3	57	85	8	166	11	48	2	36	1.55
66521137--66521229	45	2.1	43	92	4	150	9	52	3	34	1.50
66521894--66521931	17	2.2	17	100	0	76	42	5	36	15	1.70
66522381--66522424	7	6.7	7	84	10	58	18	20	0	61	1.35
66524351--66524447	33	2.8	35	72	20	89	45	3	1	50	1.24
66526613--66526692	19	4.2	18	78	13	81	31	1	1	66	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66530433--66530594	89	1.8	88	82	4	209	38	19	8	33	1.81
66533263--66533293	16	1.9	16	100	0	62	25	6	0	67	1.14
66533279--66533330	17	2.7	19	74	17	54	40	3	0	55	1.18
66533305--66533357	27	1.9	28	84	3	72	35	1	0	62	1.06
66533330--66533374	20	2.3	20	84	3	56	35	4	0	60	1.17
66533403--66533596	89	2.2	88	82	6	239	32	11	18	37	1.87
66537937--66537962	12	2.2	12	100	0	52	38	0	15	46	1.46
66538209--66538456	124	2.0	124	95	0	451	37	15	16	30	1.90
66560311--66560366	24	2.3	24	96	0	103	33	35	5	25	1.79
66562892--66562955	17	3.9	17	72	10	53	75	3	21	0	0.95
66564232--66564266	18	2.0	17	88	5	52	48	0	8	42	1.33
66564438--66564484	24	2.0	24	86	0	67	34	0	12	53	1.39
66565572--66565596	10	2.5	10	100	0	50	20	0	8	72	1.10
66566301--66566392	7	13.3	7	78	6	89	29	9	32	28	1.89
66567273--66567357	30	2.9	28	73	11	73	56	3	9	30	1.48
66568460--66568504	20	2.2	20	88	0	63	68	2	2	26	1.12
66568489--66568513	8	3.1	8	100	0	50	64	0	0	36	0.94
66569974--66570196	119	1.9	120	82	6	283	26	27	21	24	1.99
66569953--66570196	40	6.1	40	81	6	255	26	27	21	25	1.99
66572290--66572358	37	1.9	35	85	5	93	62	11	11	14	1.55
66578011--66578050	20	2.0	20	100	0	80	30	10	40	20	1.85
66578232--66578306	38	2.0	38	100	0	150	33	8	21	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66582017--66582075	29	2.1	28	96	3	109	27	13	27	32	1.94
66583960--66584002	21	2.0	21	100	0	86	34	9	23	32	1.87
66592795--66592904	49	2.2	49	90	3	168	22	18	13	45	1.84
66593561--66593648	39	2.2	39	84	6	115	38	31	14	14	1.87
66593588--66593794	39	5.3	39	87	4	240	29	29	22	18	1.97
66593588--66593794	77	2.7	78	83	3	256	29	29	22	18	1.97
66599656--66599743	40	2.2	39	83	2	113	39	30	13	15	1.87
66599683--66599929	39	6.3	39	88	4	329	31	28	20	19	1.97
66603449--66603474	12	2.2	12	100	0	52	34	0	15	50	1.45
66604574--66604609	15	2.5	14	86	8	54	41	0	25	33	1.55
66604579--66604609	15	2.1	15	94	5	55	32	0	29	38	1.57
66605567--66605630	32	2.0	32	96	0	119	26	15	26	31	1.96
66607804--66607935	40	3.3	40	78	5	160	24	21	28	26	1.99
66620241--66620425	79	2.3	81	84	7	236	24	22	27	25	2.00
66620242--66620425	40	4.6	40	83	9	216	24	22	27	25	2.00
66620294--66620458	79	2.1	79	84	6	210	26	21	27	25	1.99
66622343--66622406	31	2.1	31	90	0	101	25	23	15	35	1.94
66622614--66622742	47	2.7	48	89	3	197	27	20	20	30	1.98
66622614--66622742	24	5.4	24	92	2	197	27	20	20	30	1.98
66625322--66625506	79	2.3	82	84	7	238	25	27	22	24	2.00
66625303--66625506	40	5.1	40	82	8	238	25	27	22	25	2.00
66634069--66634132	31	2.1	31	90	0	101	25	23	15	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66634340--66634454	24	4.8	24	93	3	178	28	20	22	28	1.98
66634340--66634454	47	2.4	48	89	4	178	28	20	22	28	1.98
66634502--66634558	9	5.9	9	73	15	51	35	21	8	35	1.84
66634498--66634560	20	3.2	20	95	0	117	31	19	12	36	1.89
66634597--66634644	25	1.9	25	86	0	69	25	16	25	33	1.96
66636526--66636556	15	2.1	15	93	0	53	19	0	9	70	1.14
66652091--66652132	21	2.0	22	90	4	68	35	0	11	52	1.38
66656878--66656918	19	2.1	20	86	4	57	29	9	9	51	1.67
66658693--66658793	37	2.7	37	92	0	148	28	28	18	23	1.98
66658862--66658936	37	2.0	37	94	0	132	28	30	17	24	1.97
66658715--66659036	168	1.9	167	90	5	517	30	25	12	31	1.93
66659147--66659337	47	4.1	47	94	0	292	26	30	10	31	1.91
66666127--66666155	14	2.0	15	93	6	51	55	0	10	34	1.34
66667142--66667231	27	3.2	27	78	7	92	31	24	25	18	1.98
66667337--66667401	28	2.3	28	89	0	94	32	6	27	33	1.82
66673942--66673982	19	2.2	19	86	0	55	24	2	2	70	1.11
66674957--66675071	55	2.1	56	80	4	126	35	23	24	16	1.95
66674976--66675071	28	3.4	27	84	4	111	33	25	25	16	1.96
66674976--66675071	27	3.4	28	82	4	113	33	25	25	16	1.96
66675178--66675241	28	2.3	28	86	0	92	32	7	26	32	1.85
66680467--66680587	60	2.0	60	96	0	224	32	22	9	35	1.87
66681321--66681360	20	2.0	20	85	0	53	37	22	2	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66681591--66681800	55	3.8	56	81	6	245	22	24	17	35	1.95
66681591--66681793	108	1.9	109	86	4	293	23	24	17	34	1.96
66683307--66683341	17	2.1	17	94	0	61	28	8	17	45	1.77
66683597--66683634	20	1.9	20	88	0	58	18	13	31	36	1.89
66692297--66692399	38	2.7	38	86	3	145	32	25	21	21	1.98
66695983--66696151	58	2.9	58	91	0	268	27	28	20	23	1.99
66695990--66696140	29	5.2	29	69	12	114	27	27	21	23	1.99
66696305--66696440	43	3.2	43	93	0	218	30	33	23	11	1.91
66696479--66696534	27	2.1	27	100	0	112	33	14	7	44	1.72
66698013--66698131	38	3.1	38	78	4	94	36	22	18	21	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235