genome.fa.s4.2.7.7.80.10.50.1000.219.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  219  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74317551--74317719	45	3.7	45	81	1	194	46	15	21	16	1.83
74320235--74320442	75	2.8	75	94	0	380	29	26	22	21	1.99
74320345--74320544	102	2.0	102	91	2	330	31	26	21	20	1.98
74327743--74327861	33	3.3	33	68	21	96	30	26	21	21	1.99
74327920--74328070	33	4.5	33	71	22	116	33	29	19	17	1.95
74327872--74328073	102	2.0	102	92	0	332	31	27	20	19	1.97
74328404--74328467	30	2.1	30	85	0	83	32	25	6	35	1.81
74328493--74328639	79	1.9	78	98	0	276	26	22	11	38	1.88
74329807--74329843	15	2.5	15	90	0	56	8	8	32	51	1.61
74330990--74331035	24	1.9	24	95	0	83	28	17	23	30	1.97
74330989--74331042	24	2.2	24	86	0	81	35	14	22	27	1.93
74332013--74332074	29	2.1	29	82	5	72	20	8	12	58	1.60
74332611--74332648	20	1.9	20	88	0	58	10	2	15	71	1.25
74334230--74334300	37	1.9	37	100	0	142	21	14	21	43	1.87
74338402--74338441	20	2.0	20	90	0	62	45	0	5	50	1.23
74344134--74344188	21	2.7	20	80	5	56	32	12	23	30	1.92
74345066--74345117	16	3.2	16	94	0	86	28	0	36	34	1.58
74345098--74345207	45	2.6	43	80	9	129	33	5	29	31	1.80
74345353--74345387	18	2.0	17	88	5	52	54	0	0	45	0.99
74345240--74345557	157	2.0	157	96	0	582	44	3	5	46	1.40
74345525--74345712	61	3.1	61	67	19	167	48	6	3	42	1.44
74345496--74345782	120	2.4	119	91	4	461	50	4	3	41	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74345291--74345610	157	2.0	156	83	4	367	47	4	4	44	1.42
74345630--74345664	18	2.0	17	88	5	52	54	0	0	45	0.99
74345750--74345788	17	2.3	17	90	0	60	48	2	7	41	1.45
74349360--74349422	23	2.7	23	76	16	67	53	22	6	17	1.65
74350747--74350776	5	5.8	5	96	4	51	80	0	20	0	0.72
74364955--74365015	25	2.4	25	81	5	70	31	24	22	21	1.98
74368364--74368396	17	1.9	17	88	11	50	75	6	0	18	1.00
74377025--74377607	70	8.3	70	78	2	445	26	18	25	29	1.98
74377006--74377609	140	4.3	139	77	3	514	27	17	25	29	1.98
74377006--74377612	210	2.9	209	76	2	615	27	17	25	29	1.98
74377947--74377976	13	2.3	13	94	0	51	26	20	26	26	1.99
74378819--74378985	40	4.2	40	86	2	187	37	18	26	17	1.93
74381145--74381254	51	2.2	51	94	0	193	34	26	10	28	1.90
74381379--74381492	33	3.5	32	77	4	102	28	43	0	28	1.55
74382101--74382311	117	1.8	117	89	0	332	42	23	10	23	1.85
74382498--74382534	16	2.3	16	90	0	56	35	2	21	40	1.68
74387207--74387366	67	2.4	67	87	2	223	24	25	16	33	1.95
74388122--74388173	13	4.1	13	82	5	70	32	7	25	34	1.84
74395520--74395697	40	4.4	40	77	10	175	23	15	28	32	1.95
74395520--74395694	41	4.3	41	76	8	153	23	14	28	33	1.94
74395520--74395676	81	1.9	80	82	7	192	23	15	28	33	1.95
74399304--74399357	26	2.1	25	86	10	74	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74399313--74399388	30	2.5	30	87	6	100	48	2	0	48	1.15
74411413--74411708	97	2.9	100	79	8	332	43	1	13	41	1.52
74411556--74411602	22	2.2	21	85	11	60	48	0	2	48	1.13
74411504--74411716	106	2.0	105	81	4	250	41	0	13	44	1.49
74414658--74414699	20	2.1	20	86	0	57	47	0	7	45	1.30
74418242--74418291	25	2.0	24	96	3	91	54	12	16	16	1.69
74420697--74420735	11	3.5	11	82	0	51	35	7	0	56	1.28
74428262--74428307	23	2.0	23	86	0	65	13	10	28	47	1.76
74445975--74446009	18	1.9	18	94	0	61	20	5	20	54	1.64
74451110--74451565	228	2.0	228	99	0	903	32	16	25	26	1.97
74457344--74457376	17	1.9	18	88	11	52	42	9	0	48	1.35
74461071--74461132	22	2.8	22	87	4	81	46	6	6	40	1.55
74461293--74461321	14	2.0	15	93	6	51	31	0	0	68	0.89
74466592--74468321	248	7.0	247	95	0	2962	38	15	10	35	1.82
74466592--74468321	495	3.5	494	94	1	3018	38	15	10	35	1.82
74469026--74469078	20	2.5	20	81	6	61	22	22	22	32	1.98
74471262--74471300	20	1.9	21	89	5	62	28	15	7	48	1.72
74472759--74472841	41	2.0	41	97	0	157	48	13	12	26	1.77
74478349--74478386	17	2.2	17	95	0	67	57	13	0	28	1.36
74479031--74479101	36	2.0	36	88	0	106	43	12	14	29	1.82
74479347--74479393	24	2.0	24	82	0	58	17	29	8	44	1.78
74479960--74480022	20	3.2	20	65	17	60	49	7	19	23	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74489271--74489402	17	7.8	17	69	16	62	15	20	32	31	1.93
74489415--74489500	17	4.7	17	78	16	91	12	24	31	31	1.93
74489435--74489478	22	2.0	22	95	0	79	11	22	31	34	1.90
74491977--74492003	13	2.1	13	100	0	54	14	14	7	62	1.51
74492361--74492413	26	2.0	26	85	7	72	49	0	3	47	1.19
74500965--74501129	40	4.1	40	82	6	192	24	23	26	26	2.00
74500959--74501122	80	2.0	80	84	4	215	28	20	24	26	1.99
74501105--74501385	142	2.0	139	90	3	447	28	20	22	28	1.98
74501314--74501417	40	2.6	40	86	4	138	26	19	24	29	1.98
74501723--74501783	7	8.6	7	83	3	59	21	0	29	49	1.50
74501723--74501783	14	4.3	14	83	4	77	21	0	29	49	1.50
74501728--74501783	22	2.6	21	80	5	76	21	0	30	48	1.51
74501723--74501789	29	2.3	28	87	5	98	20	0	31	47	1.51
74501785--74501840	7	7.9	7	86	4	76	16	0	53	30	1.43
74501723--74501870	7	20.9	7	74	10	50	19	0	38	41	1.52
74504073--74504135	31	2.0	31	100	0	126	26	12	12	47	1.78
74532753--74532966	55	3.9	56	81	2	225	26	19	12	41	1.87
74537220--74537254	18	1.9	18	88	0	52	11	17	8	62	1.52
74539173--74539401	27	8.5	27	77	5	205	17	18	19	44	1.88
74539173--74539413	81	3.0	81	85	1	279	17	18	20	43	1.88
74540007--74540039	15	2.1	16	88	5	50	51	0	48	0	1.00
74540009--74540052	10	4.6	10	77	11	56	50	0	47	2	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74543332--74543393	25	2.5	25	94	0	106	20	35	14	29	1.93
74543345--74543401	25	2.3	25	93	0	96	24	36	12	26	1.91
74543534--74543589	28	2.0	28	93	6	96	25	30	12	32	1.92
74543539--74543602	28	2.3	28	89	2	94	28	25	12	34	1.92
74548149--74548288	39	3.6	38	76	6	138	17	25	20	35	1.95
74552924--74553038	49	2.3	49	77	4	124	26	22	18	33	1.97
74559266--74559355	25	3.6	25	80	8	87	26	25	17	30	1.98
74559516--74559577	31	2.1	30	82	17	76	46	8	16	29	1.75
74567038--74567089	26	2.0	27	88	3	79	65	7	25	1	1.30
74568348--74568377	7	4.1	7	95	4	51	43	26	0	30	1.55
74569388--74569425	17	2.2	17	95	0	67	42	13	15	28	1.85
74577011--74577510	250	2.0	250	100	0	1000	21	26	20	31	1.98
74580499--74580548	21	2.4	19	81	18	64	14	34	4	48	1.62
74590663--74590716	27	2.0	28	88	3	83	66	0	1	31	1.02
74591191--74591239	16	3.1	16	77	11	55	67	0	0	32	0.91
74600049--74600074	4	6.5	4	100	0	52	0	26	0	73	0.84
74613946--74613994	21	2.5	20	80	12	57	36	8	14	40	1.75
74615127--74615203	38	2.0	38	92	0	127	31	1	35	32	1.66
74616002--74616038	18	2.1	18	90	5	58	16	24	35	24	1.95
74622049--74622122	38	1.9	38	94	0	130	31	1	35	32	1.66
74622871--74622926	23	2.4	23	90	0	85	26	12	39	21	1.89
74625191--74625310	46	2.6	46	85	6	161	31	19	21	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74625204--74625325	46	2.7	46	85	8	153	31	19	22	26	1.98
74627743--74627807	32	2.1	32	97	2	123	30	9	12	47	1.72
74628361--74628500	17	7.4	17	76	18	68	70	12	15	2	1.25
74628360--74628501	9	14.8	9	69	25	78	71	11	14	2	1.24
74628396--74628476	21	3.9	21	85	11	121	67	11	18	2	1.31
74628386--74628482	41	2.3	42	94	5	171	70	11	16	2	1.26
74628395--74628501	11	10.5	11	72	17	81	69	12	16	1	1.28
74628386--74628482	20	4.7	20	80	16	126	70	11	16	2	1.26
74632019--74632060	20	2.1	20	86	0	57	47	0	7	45	1.30
74640268--74640317	23	2.2	23	82	7	57	56	0	10	34	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235