genome.fa.s4.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  91  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31605290--31605591	27	11.2	27	79	9	143	37	21	8	32	1.83
31605290--31605421	54	2.4	54	83	2	158	33	23	6	36	1.81
31605241--31605430	81	2.3	81	76	3	202	33	22	7	36	1.82
31605273--31605529	81	3.2	80	79	7	232	35	21	8	34	1.83
31605385--31605563	82	2.2	81	88	6	256	42	20	7	29	1.80
31605385--31605595	54	3.9	53	84	4	237	41	20	8	29	1.82
31605584--31605797	27	7.9	27	86	0	275	36	18	19	25	1.94
31605576--31605797	81	2.7	81	88	2	313	37	18	19	24	1.93
31606003--31606072	25	2.8	25	80	4	79	27	28	22	21	1.99
31606040--31606099	25	2.4	24	81	10	59	26	25	21	26	2.00
31619106--31619199	47	1.9	49	85	6	129	24	19	20	36	1.95
31619132--31619221	23	3.9	22	73	16	67	24	18	20	36	1.95
31624239--31624365	27	4.7	27	82	0	155	39	21	8	30	1.83
31624243--31624392	54	2.8	53	86	2	192	39	20	10	30	1.85
31624354--31624497	27	5.3	27	81	5	132	38	18	18	25	1.93
31624354--31624514	54	3.0	53	75	5	162	37	16	19	26	1.93
31624320--31624510	81	2.3	80	79	8	199	38	17	17	26	1.91
31625031--31625217	25	7.5	25	80	8	93	21	19	12	46	1.83
31625028--31625282	6	41.3	6	72	16	157	20	18	13	47	1.81
31625056--31625261	37	5.2	37	70	17	128	20	18	13	47	1.83
31625029--31625282	62	4.1	62	89	1	359	20	18	13	48	1.81
31627261--31627384	27	4.6	26	81	4	131	38	23	8	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31627250--31627384	54	2.5	54	86	0	198	38	22	8	29	1.85
31627366--31627532	27	6.2	28	81	4	175	34	17	20	28	1.95
31627250--31627408	54	2.9	54	83	1	167	37	22	10	29	1.87
31627373--31627530	81	2.0	80	85	1	217	33	17	21	27	1.96
31627766--31627899	69	2.0	67	82	2	160	20	25	21	32	1.97
31628044--31628154	25	4.7	25	78	15	119	18	18	15	48	1.81
31628044--31628196	37	4.3	36	74	17	149	17	18	15	49	1.81
31628044--31628217	6	28.3	6	73	13	140	17	17	14	49	1.80
31628045--31628217	43	4.2	41	75	14	158	17	17	15	49	1.79
31628079--31628196	31	3.8	31	78	12	143	16	18	16	48	1.82
31630379--31630450	27	2.7	27	93	2	119	34	19	19	26	1.96
31634025--31634136	27	4.2	27	88	3	165	41	22	13	23	1.89
31634025--31634136	53	2.1	53	89	0	170	41	22	13	23	1.89
31640295--31640497	53	3.8	53	74	3	145	36	17	23	21	1.94
31650925--31650958	7	4.6	7	89	10	50	67	0	2	29	1.05
31650926--31650969	15	2.7	16	79	13	54	65	0	4	29	1.12
31652754--31652815	32	1.9	32	96	0	115	29	9	22	38	1.86
31656400--31656424	7	3.6	7	100	0	50	12	0	0	88	0.53
31658673--31658711	16	2.7	15	88	11	55	17	5	0	76	0.96
31675314--31675505	40	4.8	40	83	7	223	24	22	28	25	2.00
31675314--31675505	79	2.4	80	84	6	239	24	22	28	25	2.00
31675315--31675531	79	2.7	79	81	7	210	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31677273--31677327	27	2.0	27	100	0	110	36	14	29	20	1.92
31677275--31677337	27	2.3	27	91	5	101	34	14	30	20	1.92
31679654--31679842	54	3.5	54	75	4	209	34	16	25	22	1.95
31681312--31681385	9	8.7	9	71	22	54	24	0	20	55	1.43
31682154--31682210	30	1.9	30	92	0	96	26	17	5	50	1.67
31683407--31683466	19	3.3	18	71	15	52	63	0	26	10	1.26
31685104--31685212	50	2.1	52	83	6	134	30	13	14	41	1.85
31685120--31685220	52	2.0	50	82	7	123	33	14	12	38	1.85
31686881--31687116	105	2.3	104	94	1	418	20	36	26	16	1.93
31688461--31688570	22	4.9	23	82	8	113	21	20	21	35	1.96
31688738--31688816	20	4.0	20	83	0	68	36	7	17	37	1.79
31688745--31688837	40	2.3	40	83	0	105	34	8	18	38	1.81
31688767--31688856	20	4.5	20	83	5	94	32	10	18	38	1.84
31688826--31688871	20	2.3	20	88	0	65	36	6	21	34	1.80
31692745--31692842	49	2.0	49	95	0	178	29	6	21	42	1.77
31695255--31695486	49	4.7	49	83	5	295	28	28	17	24	1.97
31695255--31695486	100	2.3	99	85	4	306	28	28	17	24	1.97
31698150--31698199	27	1.9	27	88	8	77	56	18	0	26	1.42
31698385--31698513	50	2.5	50	82	2	159	37	13	14	34	1.85
31702386--31702420	17	2.0	18	88	5	54	17	25	37	20	1.94
31709780--31709983	40	5.1	40	86	1	264	25	18	22	33	1.96
31725131--31725222	39	2.4	39	98	0	175	42	13	9	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31732700--31732789	6	14.7	6	73	17	69	48	16	15	18	1.81
31732700--31732789	19	4.9	18	72	17	69	48	16	15	18	1.81
31732709--31732819	31	3.5	31	85	3	134	50	14	15	19	1.78
31732956--31733057	27	3.8	26	88	5	132	36	21	23	18	1.95
31733216--31733280	22	3.0	22	80	8	78	33	23	23	20	1.97
31733770--31733912	27	5.3	27	74	5	92	30	10	23	36	1.88
31735830--31735880	25	2.0	25	100	0	102	31	23	3	41	1.73
31736899--31736968	25	2.8	25	86	0	104	47	11	21	20	1.81
31736901--31737002	31	3.5	31	72	15	99	46	12	19	21	1.83
31737115--31737174	27	2.3	26	82	2	66	35	20	21	23	1.96
31737216--31737266	27	1.9	26	84	4	66	35	17	27	19	1.94
31737502--31737803	134	2.2	135	86	2	428	42	5	20	31	1.76
31737502--31737803	27	11.2	27	85	2	356	42	5	20	31	1.76
31737781--31737949	27	6.3	27	81	8	164	31	8	21	39	1.83
31737857--31737976	54	2.2	54	80	5	136	30	12	18	38	1.88
31737944--31738013	27	2.6	27	88	0	95	28	24	15	31	1.96
31739874--31739971	6	15.8	6	70	17	67	46	13	20	19	1.83
31739874--31739943	25	2.8	25	93	0	122	45	12	22	18	1.83
31739874--31739971	31	3.4	30	78	16	116	46	13	20	19	1.83
31739874--31739968	25	3.8	25	83	6	104	46	13	21	18	1.83
31740476--31740912	27	16.2	27	86	1	563	40	6	21	31	1.78
31740904--31741058	27	5.7	28	80	4	140	29	7	21	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31740476--31740939	108	4.3	108	88	2	630	39	6	22	31	1.79
31740962--31741085	54	2.3	54	77	5	126	29	12	19	39	1.87
31741053--31741111	27	2.2	27	90	0	91	27	22	16	33	1.95
31749912--31749963	27	2.0	26	84	3	68	34	21	26	17	1.95
31750200--31750527	27	12.2	27	86	2	365	40	7	21	30	1.80
31750519--31750621	27	3.8	27	79	5	102	28	8	22	40	1.83
31750576--31750642	27	2.5	27	80	7	73	29	10	22	37	1.88
31752033--31752108	6	12.3	6	72	15	57	44	14	21	19	1.86
31752033--31752102	25	2.8	25	91	0	113	45	14	21	18	1.84
31752033--31752120	31	3.0	30	74	19	96	45	14	20	19	1.85
31752733--31753088	27	13.2	27	85	1	381	39	7	21	31	1.81
31752733--31753088	81	4.4	81	83	1	426	39	7	21	31	1.81
31753053--31753185	27	5.0	27	78	12	105	29	9	21	39	1.85
31753110--31753206	27	3.6	27	87	0	122	30	9	19	40	1.83
31753188--31753271	27	3.1	27	85	0	105	28	20	19	32	1.96
31755106--31755186	26	3.2	26	64	30	66	30	28	14	25	1.95
31755065--31755294	50	4.6	50	81	7	274	29	26	18	25	1.98
31755112--31755291	99	1.8	100	90	1	290	30	25	18	26	1.98
31755519--31755572	27	2.0	27	85	0	72	38	14	7	38	1.75
31786016--31786085	35	2.0	35	97	0	131	24	14	20	41	1.89
31804222--31804645	40	10.9	40	80	7	392	28	27	21	22	1.99
31804410--31804466	29	2.0	29	100	0	114	35	31	19	14	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31804331--31804545	108	2.0	109	87	0	315	31	27	20	20	1.97
31804289--31804585	148	2.0	149	84	3	384	29	27	20	21	1.98
31804262--31804625	188	1.9	189	82	3	448	29	27	20	22	1.99
31811445--31811743	49	5.9	49	83	6	355	28	27	18	25	1.98
31811458--31811744	103	2.8	103	86	5	374	28	27	17	25	1.98
31812045--31812082	14	2.5	16	87	8	53	34	21	2	42	1.67
31817469--31817539	32	2.2	32	85	9	92	40	22	9	26	1.85
31821255--31821403	51	2.9	51	87	0	235	32	27	8	30	1.87
31821483--31821631	51	2.9	51	87	0	235	32	27	8	30	1.87
31821213--31821669	228	2.0	228	100	0	914	29	30	8	31	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235