genome.fa.s4.2.7.7.80.10.50.1000.192.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  192  of  235  ( 28198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65317055--65317091	18	2.1	18	94	0	65	21	51	2	24	1.61
65317600--65317655	29	1.9	29	85	0	76	26	33	21	17	1.96
65323834--65324121	31	9.3	31	98	0	558	22	19	3	54	1.59
65324464--65324537	29	2.6	29	82	4	87	39	18	20	21	1.93
65324551--65324613	26	2.5	26	78	2	74	41	22	15	20	1.90
65325819--65325849	15	2.0	16	93	6	55	29	32	0	38	1.57
65326753--65326814	26	2.4	27	82	15	85	14	27	17	40	1.89
65332279--65332602	120	2.7	120	83	0	398	25	29	23	22	1.99
65332284--65332602	40	8.0	40	89	0	361	25	28	23	22	1.99
65333816--65333894	37	2.1	37	90	0	122	25	31	18	24	1.98
65334013--65338587	47	97.1	47	99	0	8934	29	29	8	32	1.87
65340682--65341030	85	4.1	85	99	0	689	26	26	8	38	1.85
65342722--65343153	40	10.8	40	96	0	747	25	28	22	23	1.99
65344732--65344854	47	2.6	47	85	0	138	26	29	8	35	1.85
65347890--65347960	27	2.6	27	88	0	115	33	28	11	26	1.91
65347890--65347970	27	3.0	27	82	7	101	30	25	9	33	1.89
65349371--65349500	70	1.9	69	87	3	190	24	21	19	34	1.96
65349368--65349628	68	3.8	70	77	5	212	25	24	16	33	1.96
65351278--65351363	24	3.6	24	79	4	95	41	20	22	15	1.89
65354000--65354032	8	4.1	8	96	0	57	57	30	0	12	1.35
65355426--65355463	19	2.0	19	89	0	58	34	18	31	15	1.92
65355554--65355659	29	3.7	29	75	6	99	31	15	28	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65355545--65355657	58	2.0	57	84	5	147	32	14	26	26	1.94
65371425--65371489	34	1.9	34	87	6	96	30	21	26	21	1.98
65379693--65379733	21	2.0	21	90	0	64	36	24	0	39	1.56
65384433--65384460	14	2.0	14	100	0	56	42	21	7	28	1.79
65386099--65386143	22	2.0	23	86	4	65	8	0	35	55	1.31
65394130--65394478	174	2.0	174	100	0	698	32	9	33	24	1.87
65395532--65395656	29	4.3	29	91	1	198	25	12	31	30	1.93
65401252--65401362	40	2.8	40	94	1	195	18	27	32	21	1.97
65404435--65404478	23	1.9	23	85	0	61	34	18	20	27	1.96
65405119--65405329	108	2.0	108	99	0	413	26	23	13	36	1.92
65415225--65415279	28	2.0	28	96	0	101	41	12	12	32	1.81
65415348--65415372	13	1.9	13	100	0	50	40	16	0	44	1.47
65417172--65417287	40	2.8	41	84	10	155	29	18	16	36	1.92
65419274--65419360	43	2.0	43	100	0	174	36	4	16	42	1.68
65427976--65428003	6	4.7	6	100	0	56	0	14	0	85	0.59
65430652--65430687	17	2.1	17	100	0	72	58	11	0	30	1.33
65444517--65445298	390	2.0	390	94	1	1370	32	21	10	35	1.87
65458988--65459061	29	2.6	29	86	4	96	25	31	16	27	1.96
65473913--65474027	43	2.7	42	84	8	126	34	24	14	26	1.94
65476663--65476728	33	2.0	33	96	0	123	33	13	4	48	1.63
65476665--65476716	16	3.3	15	71	23	52	32	13	1	51	1.52
65482930--65482976	21	2.2	22	92	3	78	21	19	38	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65484265--65484338	31	2.4	31	81	0	85	44	6	9	39	1.63
65489958--65489986	14	2.1	14	100	0	58	58	0	6	34	1.25
65498250--65498309	30	2.0	30	90	0	93	63	8	1	26	1.32
65499506--65499543	20	1.9	20	88	0	58	18	13	31	36	1.89
65510725--65510832	44	2.4	44	85	3	135	29	22	13	34	1.93
65521393--65521454	28	2.2	28	88	0	97	24	33	9	32	1.88
65521536--65521720	64	2.9	64	76	7	171	18	18	14	47	1.82
65523094--65523143	20	2.6	19	84	9	57	42	0	22	36	1.54
65528891--65528998	25	4.4	23	72	17	85	36	18	21	24	1.95
65530558--65530582	13	1.9	13	100	0	50	72	0	28	0	0.86
65548742--65548766	12	2.1	12	100	0	50	0	16	0	84	0.63
65551674--65551717	19	2.3	20	84	7	56	27	20	11	40	1.86
65555840--65556016	86	2.1	85	88	4	257	25	22	24	27	2.00
65555965--65556373	134	3.1	134	98	0	784	27	21	22	28	1.99
65556309--65556561	45	5.4	45	64	19	140	29	20	22	27	1.98
65556275--65556563	95	3.0	95	98	0	551	29	20	22	27	1.99
65556354--65556516	50	3.4	50	66	17	135	31	19	23	26	1.98
65556677--65557369	309	2.2	308	93	0	1181	27	16	25	29	1.97
65556678--65557493	132	6.2	133	91	2	825	28	16	25	29	1.97
65561331--65561422	48	1.9	48	90	0	148	18	16	26	39	1.91
65561331--65561439	48	2.3	48	85	3	139	19	17	25	37	1.93
65562360--65562420	30	2.0	30	83	0	77	39	4	21	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65570141--65570212	36	2.0	35	89	2	108	23	37	12	25	1.90
65572812--65572840	13	2.2	13	100	0	58	31	0	13	55	1.39
65577882--65577916	18	1.9	18	94	0	61	42	2	28	25	1.69
65580405--65580550	40	3.7	40	94	0	240	23	22	26	28	1.99
65583835--65584096	39	6.7	40	87	7	319	25	27	21	25	1.99
65591980--65592086	25	4.6	23	79	12	103	30	22	20	26	1.98
65591980--65592090	45	2.4	48	82	11	140	31	21	20	26	1.98
65591980--65592119	24	5.8	24	81	11	128	30	21	21	26	1.98
65594692--65594718	12	2.2	12	100	0	54	44	7	0	48	1.31
65595416--65595847	215	2.0	215	98	0	837	29	11	26	33	1.91
65596367--65596438	35	2.1	35	86	5	101	33	18	22	26	1.96
65598273--65598304	15	2.1	16	94	5	57	53	0	9	37	1.34
65598280--65598316	11	3.5	11	82	14	51	48	0	10	40	1.38
65598276--65598334	19	3.1	19	82	4	73	47	0	10	42	1.37
65598917--65598955	19	2.1	19	85	0	51	71	7	5	15	1.26
65599437--65599510	27	2.7	26	79	6	76	32	22	24	20	1.98
65599616--65599680	28	2.3	28	94	0	112	30	7	27	33	1.85
65606798--65606836	19	2.1	19	85	0	51	71	7	5	15	1.26
65607302--65607371	27	2.5	28	86	4	88	32	24	24	18	1.97
65607302--65607391	28	3.2	28	78	7	94	31	24	24	20	1.98
65607497--65607561	28	2.3	28	94	0	112	30	7	27	33	1.85
65610208--65610284	29	2.7	29	82	9	95	33	12	20	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65611238--65611341	51	2.0	51	88	0	154	35	9	16	38	1.81
65618046--65618190	71	2.0	71	97	0	272	29	26	18	24	1.98
65628296--65628377	40	2.0	40	80	2	92	31	29	15	23	1.95
65638967--65639095	50	2.6	50	82	6	156	24	33	18	23	1.97
65641864--65641947	42	2.0	42	100	0	168	40	9	9	40	1.70
65647408--65647450	18	2.4	18	80	0	50	23	2	0	74	0.93
65651417--65651542	28	4.5	28	91	1	191	33	27	12	26	1.93
65653137--65653242	27	4.0	26	81	6	113	18	24	18	37	1.94
65653137--65653242	54	2.0	53	83	1	131	18	24	18	37	1.94
65666882--65666966	22	3.7	23	80	16	79	23	22	16	37	1.93
65666882--65666966	23	3.7	22	80	16	77	23	22	16	37	1.93
65681503--65681572	24	2.8	26	72	14	74	27	18	20	34	1.96
65681563--65681621	23	2.6	22	79	10	66	22	23	18	35	1.96
65681584--65681643	23	2.5	24	81	8	68	25	25	23	26	2.00
65684328--65684378	23	2.2	23	96	0	93	35	19	11	33	1.88
65685397--65685477	42	1.9	42	94	0	144	35	4	38	20	1.75
65688465--65688511	23	2.0	24	84	12	62	29	21	4	44	1.71
65688760--65688879	26	4.8	25	72	14	97	42	18	20	19	1.89
65689776--65689845	25	2.8	25	93	0	113	24	22	25	27	2.00
65689876--65689906	16	1.9	16	93	0	53	35	16	19	29	1.93
65690643--65690719	27	2.9	27	76	7	68	23	19	19	37	1.94
65690655--65690720	27	2.4	27	85	5	80	21	19	18	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65690773--65690858	27	3.1	27	79	14	77	38	10	12	38	1.78
65690782--65690939	54	2.9	54	76	9	142	32	9	16	41	1.81
65690808--65690959	27	5.6	27	80	6	103	30	8	19	41	1.81
65690861--65690992	54	2.4	54	80	7	135	30	12	19	37	1.88
65690994--65691188	27	7.2	26	86	3	210	38	6	24	30	1.80
65690995--65691188	81	2.4	81	90	1	291	39	6	24	29	1.80
65690996--65691188	54	3.6	54	85	1	244	39	6	24	30	1.80
65691034--65691208	81	2.2	81	87	0	242	38	6	22	32	1.80
65693335--65693404	31	2.3	31	90	2	106	34	24	11	30	1.90
65693345--65693417	31	2.4	31	86	2	103	30	26	13	30	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235