Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  78745976

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   

This is table  182  of  235  ( 28198 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61931338--61931509
93
1.8
93
96
0
317
27
29
21
20
1.98
61931331--61931506
46
3.8
46
79
12
216
28
29
21
20
1.98
61942792--61942845
28
1.9
28
88
0
81
70
1
7
20
1.21
61946489--61946536
25
1.9
25
82
0
60
31
20
18
29
1.97
61946668--61946738
26
2.9
24
83
8
97
28
26
21
23
1.99
61946668--61946751
24
3.4
24
82
9
98
30
23
21
23
1.99
61953614--61953662
25
2.0
25
87
0
71
34
20
16
28
1.94
61953795--61953865
25
2.8
25
83
10
81
29
22
21
26
1.99
61953795--61953865
26
2.8
25
85
6
81
29
22
21
26
1.99
61953821--61953878
24
2.4
25
76
21
61
31
17
22
29
1.96
61955371--61955725
118
3.0
118
97
0
656
38
21
8
30
1.83
61956510--61956785
86
3.2
86
84
3
351
30
28
16
24
1.96
61956510--61956785
43
6.5
42
84
2
318
30
28
16
24
1.96
61959695--61960196
255
2.0
247
94
3
887
29
13
25
31
1.94
61960499--61960606
27
4.0
27
76
8
103
15
23
21
39
1.91
61966851--61966944
24
3.9
24
87
4
127
35
3
36
25
1.72
61968341--61968452
27
4.1
27
82
7
129
15
23
24
37
1.93
61968341--61968452
54
2.1
54
88
3
163
15
23
24
37
1.93
61974719--61974786
35
1.9
35
90
0
109
32
11
20
35
1.89
61984994--61985171
27
6.6
27
82
3
196
27
15
27
29
1.96
61984995--61985150
82
1.9
81
87
6
226
27
15
27
29
1.96
61984994--61985171
82
2.2
81
82
5
216
27
15
27
29
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61992306--61992366
30
2.0
30
90
0
95
31
24
8
36
1.85
62008214--62008265
21
2.4
22
78
9
54
61
5
11
21
1.50
62009132--62009203
36
2.0
35
94
2
126
34
18
8
37
1.81
62015378--62015402
9
2.8
9
100
0
50
52
0
12
36
1.39
62021558--62021940
50
7.6
50
74
7
319
30
25
16
26
1.97
62021556--62021941
151
2.6
150
87
2
542
30
25
16
26
1.97
62021556--62021939
101
3.8
99
76
6
335
30
25
16
26
1.97
62023227--62023445
93
2.4
90
80
8
235
26
20
29
23
1.99
62023785--62023826
21
2.0
21
90
9
68
11
35
4
47
1.61
62052595--62052803
45
4.7
45
91
2
307
22
22
27
26
1.99
62060405--62060613
45
4.7
45
91
2
307
22
22
28
26
1.99
62061099--62061131
16
1.9
18
88
11
52
18
12
18
51
1.76
62064319--62064345
11
2.5
11
100
0
54
44
11
7
37
1.68
62065262--62065292
9
3.3
9
95
4
53
45
0
0
54
0.99
62065478--62066371
100
8.9
100
99
0
1745
58
11
2
27
1.43
62069910--62069949
6
6.7
6
94
0
71
82
0
2
15
0.77
62070054--62070102
17
2.7
19
87
12
84
36
12
14
36
1.83
62074484--62074668
40
4.7
40
83
5
214
24
27
21
25
1.99
62074484--62074668
79
2.3
80
80
6
214
24
27
21
25
1.99
62082397--62082581
40
4.7
40
83
5
214
24
27
22
24
2.00
62082397--62082581
79
2.3
80
81
8
216
24
27
22
24
2.00
62089558--62089647
46
2.0
45
86
0
117
28
24
20
25
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62091139--62091453
44
7.1
45
72
12
240
32
16
23
27
1.96
62091139--62091457
132
2.4
132
90
1
494
31
16
23
27
1.96
62091418--62091987
175
3.3
175
91
0
908
33
18
20
27
1.96
62092239--62092352
19
5.9
19
95
2
201
35
10
17
35
1.84
62093114--62093138
13
1.9
13
100
0
50
44
8
8
40
1.63
62094374--62094436
33
1.9
33
100
0
126
39
15
4
39
1.69
62097605--62097724
48
2.5
48
84
5
147
34
15
22
28
1.94
62099187--62099221
18
1.9
18
88
0
52
22
0
5
71
1.07
62102860--62102888
2
14.5
2
100
0
58
51
48
0
0
1.00
62110669--62111057
44
8.9
43
74
10
290
30
14
28
26
1.95
62110664--62111038
88
4.3
88
78
7
327
30
14
28
27
1.95
62111060--62111115
20
3.1
20
66
28
61
30
17
25
26
1.97
62111047--62111115
34
2.0
34
97
0
129
34
17
24
23
1.96
62111081--62111330
84
3.0
84
89
0
383
33
13
26
26
1.93
62111084--62111285
45
4.8
44
66
19
117
33
13
26
26
1.93
62111047--62111301
39
6.4
39
66
22
111
34
14
25
25
1.93
62111263--62111477
69
3.1
69
87
2
288
31
17
25
26
1.97
62112087--62112128
20
2.1
20
100
0
84
50
14
21
14
1.78
62113134--62113208
29
2.6
29
81
8
98
36
4
0
60
1.16
62117948--62119112
47
24.7
47
98
0
2186
32
8
29
29
1.87
62119231--62119338
37
2.9
37
94
0
180
22
21
30
25
1.98
62123373--62123424
20
2.6
20
78
0
59
17
19
26
36
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62126261--62126355
27
3.5
28
76
12
99
33
25
13
27
1.93
62133252--62133276
13
1.9
13
100
0
50
80
0
12
8
0.92
62134345--62134369
13
1.9
13
100
0
50
80
0
20
0
0.72
62134909--62134982
28
2.5
30
79
14
84
60
10
4
24
1.47
62138161--62138246
43
2.0
43
97
0
163
23
19
10
46
1.81
62141427--62141591
46
3.6
44
78
8
145
24
29
21
24
1.99
62142511--62142556
23
2.1
23
84
8
60
30
30
26
13
1.93
62161847--62161902
25
2.3
24
76
11
60
60
0
3
35
1.14
62161847--62161903
18
3.3
16
75
20
53
61
0
3
35
1.13
62161839--62161902
33
1.9
34
87
12
98
62
0
3
34
1.11
62161866--62161953
26
3.5
24
82
14
99
61
1
4
32
1.24
62161867--62161953
12
6.8
13
72
19
53
60
1
4
33
1.24
62161983--62162036
25
2.2
25
90
3
83
66
1
0
31
1.02
62163515--62163863
175
2.0
175
83
3
434
25
28
15
30
1.96
62163446--62163865
44
9.6
44
81
3
434
26
27
15
30
1.96
62164911--62164974
32
2.0
32
100
0
128
25
37
9
28
1.87
62175665--62175823
83
1.9
83
100
0
318
60
6
9
23
1.51
62176043--62176166
15
7.4
16
68
23
60
60
0
4
34
1.21
62176035--62176098
33
1.9
34
87
12
98
62
0
3
34
1.11
62176074--62176165
26
4.2
21
71
24
75
60
1
4
33
1.23
62176063--62176165
14
7.8
13
71
19
56
61
0
3
33
1.21
62176262--62176315
25
2.2
24
87
9
74
68
1
0
29
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62176265--62176307
16
2.7
16
82
7
52
69
2
0
27
1.00
62178527--62178551
7
3.6
7
100
0
50
28
0
16
56
1.41
62185239--62185273
14
2.5
14
100
0
70
40
22
5
31
1.78
62185051--62185469
223
1.9
223
98
0
811
36
21
7
34
1.82
62185615--62185653
19
2.1
19
85
9
53
35
25
20
17
1.95
62190474--62190539
34
2.0
32
83
13
82
56
1
1
40
1.18
62192500--62192544
21
2.1
21
100
0
90
33
13
4
48
1.62
62201760--62201796
14
2.8
13
88
11
58
21
5
10
62
1.48
62207867--62207934
29
2.3
29
85
5
93
27
30
13
27
1.94
62207756--62208083
174
1.9
174
97
0
620
30
24
14
29
1.95
62208036--62208114
29
2.7
30
82
13
110
29
30
15
25
1.96
62222162--62222229
4
16.8
4
76
14
52
25
4
0
70
1.05
62223814--62223852
11
3.5
11
82
6
51
15
0
10
74
1.07
62223817--62223850
6
5.8
6
86
6
52
14
0
11
73
1.10
62227588--62227691
55
1.9
55
82
7
133
26
24
14
34
1.94
62231388--62231617
28
8.2
28
81
1
273
31
20
19
28
1.97
62233486--62233529
16
2.9
16
83
6
56
50
6
0
43
1.29
62235990--62236067
40
2.0
40
82
10
97
37
11
8
42
1.73
62236309--62236443
23
5.7
23
69
18
75
35
20
19
24
1.96
62236302--62236360
23
2.6
22
77
15
75
37
16
18
27
1.93
62239297--62239326
9
3.3
9
90
0
51
56
6
0
36
1.26
62243826--62243882
21
2.7
21
83
0
69
12
26
38
22
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62249304--62249455
66
2.3
66
86
1
205
29
11
20
38
1.87
62253743--62253793
22
2.2
24
79
6
61
68
3
3
23
1.23
62258608--62258664
29
2.0
28
83
10
71
26
26
26
21
1.99
62261525--62261659
66
2.0
66
97
0
252
47
15
8
28
1.75
62270372--62270425
25
2.2
25
93
0
90
29
11
25
33
1.91
62272846--62272902
22
2.7
21
73
10
62
21
3
12
63
1.43
62273105--62273142
16
2.4
16
86
4
51
34
0
18
47
1.49
62274135--62274179
17
2.6
16
86
13
63
35
8
6
48
1.61
62275158--62275193
18
2.0
18
88
0
54
36
25
16
22
1.94
62280662--62280749
28
3.1
28
96
0
167
28
22
10
38
1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235