genome.fa.s21.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  10  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3269243--3269387	68	2.1	69	83	3	177	53	4	2	40	1.32
3282841--3282977	51	2.8	49	75	12	143	24	17	27	30	1.97
3301445--3301474	15	2.0	15	93	0	51	76	6	0	16	0.99
3308380--3308559	57	3.1	58	85	4	213	44	8	18	28	1.79
3317545--3317569	8	3.1	8	100	0	50	24	0	0	76	0.80
3321627--3321684	8	7.2	8	94	0	98	22	1	1	74	1.01
3321627--3321693	16	4.2	16	88	3	73	23	1	2	71	1.08
3321625--3321693	24	2.9	24	89	4	86	23	2	2	71	1.14
3322155--3322199	22	2.0	23	91	4	74	28	2	2	66	1.15
3329560--3329606	17	2.8	17	77	9	51	23	4	4	68	1.26
3334325--3334409	43	2.0	43	88	0	125	35	10	15	38	1.82
3335481--3335535	19	2.8	19	80	17	60	67	0	7	25	1.16
3337825--3337880	13	4.5	13	80	13	64	50	14	0	35	1.43
3338328--3338373	24	2.0	23	82	4	56	52	13	6	28	1.65
3351278--3351327	26	1.9	26	100	0	100	42	16	18	24	1.89
3353933--3353968	16	2.2	16	90	0	54	41	2	25	30	1.69
3354145--3354270	58	2.2	58	86	2	173	53	3	0	42	1.16
3355828--3355935	41	2.6	41	91	0	162	26	24	21	27	1.99
3360898--3360931	17	2.0	17	88	11	52	82	5	8	2	0.93
3361480--3361575	47	2.0	47	95	0	174	46	5	5	42	1.48
3363230--3363266	19	1.9	19	89	10	58	70	18	8	2	1.25
3365363--3365435	34	2.1	34	82	2	83	34	10	16	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3365546--3365717	43	4.0	42	72	15	136	25	16	26	31	1.96
3369273--3369430	78	2.0	78	98	0	307	48	11	6	32	1.66
3369617--3370593	484	2.0	485	93	0	1686	41	16	9	32	1.81
3370841--3370966	45	2.8	45	91	1	191	33	23	23	20	1.97
3373926--3374001	27	2.9	26	84	5	100	43	10	14	31	1.79
3378036--3378083	18	2.6	18	80	9	53	70	2	16	10	1.24
3378058--3378089	14	2.1	16	88	11	50	68	3	18	9	1.30
3378706--3378749	22	2.0	22	100	0	88	45	4	13	36	1.64
3380971--3381851	440	2.0	440	91	0	1438	27	18	17	36	1.93
3387139--3387231	40	2.3	40	83	8	111	37	2	2	58	1.22
3391952--3392018	31	2.1	32	97	2	127	29	10	5	53	1.59
3402815--3402869	27	2.0	27	100	0	110	40	7	25	27	1.82
3412174--3412207	16	2.2	16	89	5	52	26	8	14	50	1.72
3423326--3423767	223	2.0	223	99	0	866	29	11	15	44	1.81
3431240--3431287	20	2.5	19	80	12	62	52	12	0	35	1.40
3431258--3431529	146	1.9	139	85	6	377	45	9	4	40	1.58
3433062--3433098	18	2.1	18	90	5	58	43	29	0	27	1.55
3438413--3438608	21	9.5	21	67	10	100	16	21	13	48	1.80
3438402--3438478	38	2.0	38	94	0	136	9	19	16	54	1.68
3438450--3438622	42	4.1	42	85	2	222	16	21	13	47	1.81
3438484--3438625	21	6.8	21	69	3	97	18	21	13	47	1.82
3438467--3438641	84	2.1	84	79	2	190	18	21	14	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3443111--3443156	19	2.4	19	82	7	58	6	19	0	73	1.04
3446651--3446675	8	3.1	8	100	0	50	16	0	0	84	0.63
3446678--3446779	11	9.9	11	69	25	53	41	2	0	55	1.15
3446703--3446736	17	2.0	17	94	0	59	38	0	0	61	0.96
3446662--3446812	81	1.9	82	84	4	207	37	1	0	59	1.14
3446768--3446830	32	1.9	33	87	3	92	33	0	4	61	1.17
3446837--3446867	5	6.0	5	92	7	53	0	41	58	0	0.98
3448293--3448332	20	2.0	20	90	0	62	40	0	30	30	1.57
3449865--3449889	12	2.1	12	100	0	50	48	0	0	52	1.00
3452608--3452690	39	2.2	39	82	2	96	10	21	0	67	1.21
3452636--3452717	40	2.1	40	88	2	121	14	14	0	70	1.16
3453249--3455224	988	2.0	988	100	0	3952	37	18	8	34	1.82
3457259--3457289	12	2.6	12	94	0	53	6	22	41	29	1.78
3462688--3462766	33	2.4	33	93	0	131	15	11	49	24	1.77
3463262--3463317	23	2.5	21	76	18	60	66	1	3	28	1.19
3464415--3464456	16	2.7	16	88	3	59	35	2	4	57	1.33
3465310--3465373	13	4.9	13	83	7	76	37	26	6	29	1.81
3469542--3469596	24	2.3	23	76	17	58	20	12	25	41	1.87
3471771--3471880	55	2.0	55	96	0	202	40	10	22	27	1.86
3476481--3476506	3	8.7	3	100	0	52	0	30	0	69	0.89
3488199--3488302	40	2.6	41	75	4	104	33	19	26	20	1.96
3493227--3493294	30	2.2	31	84	2	84	26	19	5	48	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3496894--3496928	17	1.9	19	88	11	56	14	14	20	51	1.76
3501088--3501134	22	2.1	22	96	0	85	36	6	4	53	1.46
3501095--3501139	22	2.0	22	91	4	72	37	6	2	53	1.40
3502103--3502147	19	2.4	19	80	0	54	44	0	2	53	1.13
3502389--3502423	18	2.0	17	88	5	52	48	0	25	25	1.51
3504168--3504216	26	1.9	25	83	4	62	8	14	26	51	1.70
3509252--3509283	12	2.6	13	85	14	50	0	40	34	25	1.56
3510946--3511078	40	3.3	40	85	2	151	46	27	14	12	1.79
3526738--3526802	30	2.2	30	94	0	112	56	15	4	23	1.57
3529024--3529230	85	2.4	85	94	0	351	25	18	22	33	1.96
3532066--3532479	29	14.3	29	96	0	756	29	0	25	44	1.58
3534705--3534753	22	2.2	21	80	16	55	30	0	32	36	1.58
3534708--3534807	52	1.9	52	89	0	155	35	0	32	33	1.58
3534760--3534828	22	3.1	22	89	0	93	39	0	28	31	1.57
3554641--3554681	21	2.0	21	81	18	50	31	19	26	21	1.97
3556735--3556807	37	2.0	37	83	5	94	43	19	12	24	1.85
3560238--3560278	21	2.0	21	81	18	50	31	19	26	21	1.97
3564387--3564457	36	2.0	36	100	0	142	14	25	26	33	1.94
3570601--3570660	29	2.1	28	84	9	77	46	25	11	16	1.81
3576169--3576206	18	2.1	19	85	9	53	44	7	7	39	1.63
3579128--3579161	15	2.2	16	89	5	52	44	11	2	41	1.56
3592017--3592092	20	3.8	21	77	11	70	34	22	32	10	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3600927--3600978	26	2.0	26	96	0	95	34	13	23	28	1.92
3609394--3609428	17	2.1	16	89	5	52	22	25	14	37	1.92
3619564--3619588	13	1.9	13	100	0	50	0	20	0	80	0.72
3620449--3620518	24	2.9	24	79	10	81	34	5	7	52	1.52
3623239--3623267	11	2.7	11	94	5	51	27	0	55	17	1.42
3624162--3624215	25	2.2	25	86	6	74	18	16	7	57	1.62
3626267--3626517	44	5.7	44	84	0	324	29	19	27	23	1.98
3627320--3627344	13	1.9	13	100	0	50	0	20	0	80	0.72
3628203--3628272	24	2.9	24	78	18	83	32	4	10	52	1.54
3633278--3633312	17	2.1	17	88	0	52	22	2	11	62	1.41
3637614--3637644	14	2.1	15	94	5	55	77	12	0	9	0.99
3643446--3643492	15	3.1	16	79	11	55	68	0	23	8	1.17
3643457--3643546	36	2.6	34	75	21	91	60	1	27	11	1.38
3643464--3643564	18	5.8	17	74	11	80	59	1	27	10	1.42
3646212--3646241	16	1.9	15	93	6	51	13	36	3	46	1.60
3648062--3648100	12	3.2	12	88	3	51	74	0	2	23	0.94
3648145--3648198	15	3.5	17	76	16	55	72	3	1	22	1.10
3648803--3648841	13	3.0	13	88	0	60	25	35	20	17	1.95
3648909--3649003	45	2.1	45	90	0	145	10	28	24	36	1.88
3651788--3651842	19	3.1	17	79	10	56	43	7	12	36	1.71
3653508--3653532	12	2.1	12	100	0	50	16	44	16	24	1.86
3657838--3657988	60	2.5	60	85	0	185	35	16	30	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3657835--3658002	20	8.4	20	65	5	70	35	16	31	16	1.91
3665361--3665420	31	1.9	31	83	6	77	10	11	6	71	1.30
3673443--3673727	145	2.0	145	95	1	509	28	21	18	31	1.97
3676557--3676597	20	2.1	20	90	4	66	43	14	17	24	1.86
3678603--3678761	6	25.0	6	68	15	52	7	22	2	67	1.27
3678648--3678741	21	4.5	19	73	12	71	5	23	2	69	1.20
3678694--3678767	33	2.2	34	85	2	96	5	22	1	70	1.16
3680296--3680341	20	2.3	20	88	0	65	36	17	19	26	1.94
3680304--3680346	20	2.2	20	95	0	77	32	13	23	30	1.93
3680845--3681162	157	2.0	157	90	1	503	35	27	14	22	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182